EWM29849.1, cds880 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29849.1
Unique Name	cds880
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:631474..633132 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29849.1
Product	Major facilitator superfamily domain, general substrate transporter
Orig transcript id	gnl\|cribi\|Naga_100017g73.347.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:631474..633132 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0006810	transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom

Homology

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BLAST of EWM29849.1 vs. NCBI_GenBank
Match: gi|585112430|gb|EWM29849.1| (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana])

HSP 1 Score: 1129.39 bits (2920), Expect = 0.000e+0
Identity = 552/552 (100.00%), Postives = 552/552 (100.00%), Query Frame = 0

Query:    1 MSAMTVVIAAWGTSLTHAVHERASLYTIDALADLLGFLVGVAITAAGTPATTGLALAVIFIFQNLLLVRVLRDDPITPSTGTTATEGSSSTLVQVPFIAGLHMSFDNKQFVALFKAAVFGSIVGTTVNLLPIFFQVVMNVPDSSLKRVYGIYVQAVVASAFVAVLAVGRLNARWGKICVLRFGVACGSLYGLLAFFASYARTVEWFYLTSVPAGLFVGTVTVNGNVLLSNSIDYDQLKTGFRRQSLYQCLMYVPLTFVSVAGSSIPLSIITAFGGLEAGHAPPAAVIQTLRLWISLIVTGCLIVSNNYLSNFKLTEAVQEDISAQLQLREQGNLLPPRDPLQENEPHKNEAVERAGNLPCGTCKGATDVSEKRGVDPGEVCAAVDAELDMSSSMTAAGLWHCTNSFLDLNFSSSELALLATHKGKQWKLWTYLLNIIASAVYAIVLLVETIAAIDQRGDLTGAEVFASFFMLASSMVIYEGGRLHAMKEIYKMGDEQKVARWARRRLSARKSIRHSVLVNPFRLVRREIVAHTMMSITLIFVITSLPSPIRK 552
            MSAMTVVIAAWGTSLTHAVHERASLYTIDALADLLGFLVGVAITAAGTPATTGLALAVIFIFQNLLLVRVLRDDPITPSTGTTATEGSSSTLVQVPFIAGLHMSFDNKQFVALFKAAVFGSIVGTTVNLLPIFFQVVMNVPDSSLKRVYGIYVQAVVASAFVAVLAVGRLNARWGKICVLRFGVACGSLYGLLAFFASYARTVEWFYLTSVPAGLFVGTVTVNGNVLLSNSIDYDQLKTGFRRQSLYQCLMYVPLTFVSVAGSSIPLSIITAFGGLEAGHAPPAAVIQTLRLWISLIVTGCLIVSNNYLSNFKLTEAVQEDISAQLQLREQGNLLPPRDPLQENEPHKNEAVERAGNLPCGTCKGATDVSEKRGVDPGEVCAAVDAELDMSSSMTAAGLWHCTNSFLDLNFSSSELALLATHKGKQWKLWTYLLNIIASAVYAIVLLVETIAAIDQRGDLTGAEVFASFFMLASSMVIYEGGRLHAMKEIYKMGDEQKVARWARRRLSARKSIRHSVLVNPFRLVRREIVAHTMMSITLIFVITSLPSPIRK
Sbjct:    1 MSAMTVVIAAWGTSLTHAVHERASLYTIDALADLLGFLVGVAITAAGTPATTGLALAVIFIFQNLLLVRVLRDDPITPSTGTTATEGSSSTLVQVPFIAGLHMSFDNKQFVALFKAAVFGSIVGTTVNLLPIFFQVVMNVPDSSLKRVYGIYVQAVVASAFVAVLAVGRLNARWGKICVLRFGVACGSLYGLLAFFASYARTVEWFYLTSVPAGLFVGTVTVNGNVLLSNSIDYDQLKTGFRRQSLYQCLMYVPLTFVSVAGSSIPLSIITAFGGLEAGHAPPAAVIQTLRLWISLIVTGCLIVSNNYLSNFKLTEAVQEDISAQLQLREQGNLLPPRDPLQENEPHKNEAVERAGNLPCGTCKGATDVSEKRGVDPGEVCAAVDAELDMSSSMTAAGLWHCTNSFLDLNFSSSELALLATHKGKQWKLWTYLLNIIASAVYAIVLLVETIAAIDQRGDLTGAEVFASFFMLASSMVIYEGGRLHAMKEIYKMGDEQKVARWARRRLSARKSIRHSVLVNPFRLVRREIVAHTMMSITLIFVITSLPSPIRK 552

The following BLAST results are available for this feature:

BLAST of EWM29849.1 vs. NCBI_GenBank

BLAST of EWM29849.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585112430\|gb\|EWM29849.1\|	0.000e+0	100.00	Major facilitator superfamily domain, general subs...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna880	rna880	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications