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Properties
| Property Name | Value |
|---|
| Product | Leucine-rich repeat, cysteine-containing subtype |
| Orig transcript id | gnl|cribi|Naga_100070g18.4232.mrna |
| Orig protein id | gnl|cribi|Naga_100070g18.4232 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:170540..173223 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8792 ID=rna8792|Name=rna8792|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
ATGGAATTACTGCAGCATGGGGGCAGTCGTGGCAAAGTAAGATCGCAACA
CTTTAGAATATTGATCATTTCTACTATGGAGGCGGGATCGGCGTCTCGAC
ATATTCCTTTTGAGAGGCGTAATATATCTGCCCAGACGGGATCCTCAGTG
TCAGTGGGTGAAGAAGAGAGCATTCAGCAGGATGCCCATGACCAAGAGGC
TTTCAGAGTGCGGGACGCATTGGCTTCTGATTCTGCCGTGCCACGAATTG
AGGATCGATCACACTACACTGCCTCGCTGCCCTCCGACGCGCCAAATGAG
GCGCACTACAAAGCGCTCTACCAACATGTCGCAGAGGAGGGTGAGGACGT
TCTCCTGCTGCTTGAAGAGCGAGAGGCACTGCGGCAGCAACTTGCCGCAG
AAAAGTGTGCGAGAGAGGATTTGGAAAAATTAAAAACCGTGGAAGCGGCC
ATGGAGAGGACTACTCAGATGTACAGACACGCCAAGCATGCTGCCCAGCG
ATGCTCAGAGGACGCAAACCAGGCTATGGTCGAACTGCGAGAAAGTCATG
CCCTTCAATCTAAGCTCCATGCATCTTTGGACGCAGCGGTACACCAGCTC
TACCGATTGCGTTTGACTGTTCAGGCGGAGGAGTCCGGTACCATACTGAG
GCACGAGGAGCACAAGAATGAAGGAGATCTGGAAGTTGGTTTGGAAGCGA
GTAATGCGTCGTCACAAAACATGACCGACGCAGAACGCCGGGCTGCCGTA
GTGATTCACTTGCTAGAACGCTTACAAAATCGCCCCACACTCATACAGTT
GCGATCCGACACGGTTAAGCGCTGTTACTTTGGCCTCTGGCGCCTTTGTC
TCCTCCAAAAGTGGCAGGATGATGGTTGGCAAGGAACATTGGCTCAGGTG
GATAATGAAATTTCATCCGTCGCGGATGGCAATGTCAGGAAGGTGGTCGA
CTCGTGCGTGAATCTCGTCCAGGACATCCTACATCAACCGGGGCTGCACC
AACGCCTTCAAGGGCAGCACCAACGCGGACAATACTCCCCGCCTACTTCC
ACATCACTAGGAGATGCATTAAGTCAACCACCTTGGCATTTATTAGGTGA
AGATTTTCGGGGACATCGGGTACTGGCAAGAGATGTGGGGTCACAGCCAA
GGTCTCAAACTCAGCGAGAAGTCCAGGATGTCTTGCTAGACATACTTGCA
ACCTACGAGAAAATTCTTCTAAACGAAACGGACTTTGATCGGATCGATGG
CTTGGACGAGACGAATGATAAGTGGGAGAGCAATTCGCTGAGTAGCTGGA
GTGCGGACGAAGGGCTCACAGGAGGGGAAGGCAGCCTGACGGGTGTGGAT
GGAGGAAAAGGAGGCTATGTGGGGCGGGATGGGGAACGAAACACTGCTGG
CAGCACTTACTTAAGCGGTCTTTGGCAGATTGTGTATGTTCTGAGTATAC
TTAGGAAAGTTTGCAAATGGCGAATTTGTTGTTTCACATGCGACTCCCCT
TCAATCGACAAAGTACGACGCAGTAAGGATGAATGGATCGTGTGGCGAGG
ATGTAACATGTGTTGCCAAGGAAGGATCTACACTACATTCTTTTGA back to topprotein sequence of rna8792 >rna8792-protein ID=rna8792-protein|Name=rna8792|organism=Nannochloropsis gaditana|type=polypeptide|length=559bp
MSLIDLCIDSICQNILCYEVPPSFDVLPPDLVRRIFDSLTSHKALTKLTL
LPLRYCDVTRLDLSPCKGVTDQWLRPFTDKTLTHLCLAFCNAITDAGLLN
LTELGGLQVADLTACAGLRTGGLAAFRESWSMTSLTLNGCRNLTDEAVKP
LAYLSALQHLRLRGCWQLSDAALNALAPLMPQLKTLDVNACRQFSSTSIS
FCVGKMREIRHLDLGYCPRGVGGGALEVLTRGPAPTTLQVLILDSSRSLS
NADLFSLGKFRCLQRLSLRNCTTISDAGLCQLPSSLETLDASHCRGVRRL
PAQSLPCLRSVNFAHSGLRDSDVGSLAVFPALVNINLDSCSIGNSGLVSL
LPLKKLKRLNLADTGVSNGGMDVLAKLSSLSVISLFYTSISDSGVRQLSV
LQNLTDLNLDNRDLTDTSLLHLSSLTKLRRLDMFSSRVSDVGLCFITSLV
ELVDLEICGGRITDKGLEYISQLPSLQRLNVSQNVQISNSGLHHLASLKD
LEALNVSHSQVAAPGALKPLCRLRGLKILAVNGCRGMDDTTLHQIQSSLP
NLRTVRAVS back to topmRNA from alignment at KK037250.1:170540..173223+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8792 ID=rna8792|Name=rna8792|organism=Nannochloropsis gaditana|type=mRNA|length=2684bp|location=Sequence derived from alignment at KK037250.1:170540..173223+ (Nannochloropsis gaditana)
GAGTTGCAACGCGTGTTTATTGTATCCCGTGATGGCGTCTTGAAACGAGA
TTTCCCCCTCGTAAATTACAAAAAGCTCCCTAAATTTTGCTGCCACAGTA
ATTCCATTAGCATGGGCGGAATTTTCTTCAAAggcctggaagagggaggc
agagacgaaggaggggtgggaggtcGTTCTTCCCGTCACTATGAAGATgc
tgcctgcccctccagaaGCCGTCTAgcggtggacgaagaggacgaaagcG
AGGCTACTTCGATCAATCTTAGCTCGGAGGCATCGGTGCACCGCTTCCTG
CAAGAGCAGTACAGCTTGGCTCGGGGCGGGCGTTGCCGAAGGTAAACGCT
CTGGATTTCTGCTACAGTTCCATCTGGTCATGAGTGGCTTATTTTGCATG
CATCTTTCATGCAAGGCCCGTATAGATGATTTTCATGAACTCTGTTCCCA
AGTGGtaattttttcttcttctttacCCGACATGCTGTCACAAACTTTTT
CGCACGCCTTCAAACCAAATTAGGTGTcggccggcggagggaaacGGCGA
GATTATGTCTCTTATCGACCTGTGTATTGACTCCATCTGCCAAAATATAC
TCTGCTACGAGGTGCCTCCATCATTTGATGTTCTGCCGCCAGATTTGGTG
CGCCGCATCTTCGACTCCTTGACAAGTCACAAGGCACTTACCAAGTTGAC
GGTAAGCATTGTCTGTGGCGATGAGACCCCCCCATCATTCAGTGTCACGA
ATCCGGTCATGCACAATTTTGTAAGATGTTTGGTCTCGATTTATTGATTA
ATATTCATTCGCCAACATCGGCAGCTCTTGCCTCTGCGATATTGCGACGT
CACTCGTCTTGACCTTTCGCCCTGCAAGGGAGTGACTGACCAGTGGTTGC
GCCCTTTTACCGACAAGACCCTTACGCATCTATGTCTAGCCTTCTGCAAT
GCTATTACGGACGCAGGTCTCCTTAATCTTACAGAGCTAGGTGGCTTACA
GGTTGCTGACTTGACAGCTTGCGCAGGCCTTAGGACCGGAGGCCTGGCGG
CGTTTCGTGAGAGCTGGTCAATGACGAGCTTGACGCTTAACGGATGCCGC
AATTTGACTGATGAGGCTGTCAAGCCACTTGCATATTTATCAGCCCTGCA
ACATCTTCGCTTGCGCGGCTGCTGGCAGCTGTCGGACGCAGCCTTGAacg
ccctggcccccctcATGCCACAGCTTAAGACACTTGACGTCAACGCGTGC
CGACAGTTTTCCTCAACCTCAATCTCTTTTTGTGTGGGGAAAATGCGTGA
GATCAGACACCTGGACCTGGGTTACTGTCCAAGGGGAGTGGGTGGCGGGG
CTTTAGAAGTTTTGACCCGCGGCCCGGCCCCTACTACCTTGCAAGTCTTG
ATCTTGGACTCGTCTCGGAGTCTGTCGAATGCGGACCTGTTCTCCCTCGG
TAAGTTCCGTTGTCTTCAGCGCCTGAGTCTCAGAAATTGCACTACCATCA
GTGATGCTGGATTGTGCCAGCTACCTTCGTCCCTTGAAACCCTGGACGCC
TCCCACTGCCGGGGAgtccgtcgcctccccgcGCAGTCCCTACCTTGTCT
ACGCAGCGTCAACTTTGCTCACAGTGGGCTTCGTGATTCGGACGTCGGGT
CGCTAGCTGTGTTTCCAGCCCTCGTCAATATCAATTTAGACTCTTGTTCG
ATAGGTAAGTGTAAATGACATCAGCAAGACATCGACATCCGATTTGCCCG
AAATTTCGGCTTGAAGAGTGGCTTCTTATGTGACTCTTCTTACTTCTTCA
ACCAGGAAATAGTGGTCTCGTCAGTCTGCTCCCTTTGAAAAAATTGAAAC
GGCTGAACCTAGCTGATACAGGGGTCTCGAATGGCGGGATGGACGTGCTG
GCCAAATTGAGCTCATTATCGGTCATCTCTTTGTTCTACACAAGTATCTC
GGACTCTGGCGTGCGTCAATTGAGCGTATTGCAAAACCTGACAGACCTTA
ACCTCGACAATCGAGATCTTACAGATACCTCTCTCCTAcacctttcctct
ctcaccaAGCTCCGGCGCCTAGACATGTTCTCTTCTCGCGTTTCTGATGT
GGGGCTGTGCTTCATCACCTCGCTGGTTGAGCTGGTAGACCTGGAGATTT
GTGGTGGGCGCATTACTGATAAGGGATTAGAATACATCTCCCAACTACCT
TCACTGCAGCGATTAAATGTGAGCCAAAATGTTCAAATATCTAATTCGGG
TCTGCATCATCTCGCATCTCTGAAAGACTTGGAAGCTTTAAACGTATCTC
ATAGTCAAGTCGCCGCGCCTGGTGCTTTGAAACCGTTGTGCAGGCTCCGA
GGCCTCAAAATACTCGCTGTTAACGGCTGCCGCGGTATGGATGATACTAC
GTTGCACCAAATTCAGAGTTCTCTGCCGAATCTACGCACGGTTAGGGCGG
TCTCTTAAGAATAAATGGTTGTTGTTGGTTGTATTCTAGACCCCACGTTC
AAGCTATTTTGTGAATATCGTACAGGAATTGTAGAGCAACAAGACGCCTG
AGACGCAGACTACAAAATTTGTTTTCTCATCGCGCGGACGTGACTTTTTT
TTAAGAGATACCTCTTTCATAATCCAAAATCTCTTGCCAGACATTTTTCT
GAATGCTACTGAACCATGTGTCCTATTTCCTGTT back to topCoding sequence (CDS) from alignment at KK037250.1:170540..173223+ >rna8792 ID=rna8792|Name=rna8792|organism=Nannochloropsis gaditana|type=CDS|length=5040bp|location=Sequence derived from alignment at KK037250.1:170540..173223+ (Nannochloropsis gaditana)
ATGTCTCTTATCGACCTGTGTATTGACTCCATCTGCCAAAATATACTCTG
CTACGAGGTGCCTCCATCATTTGATGTTCTGCCGCCAGATTTGGTGCGCC
GCATCTTCGACTCCTTGACAAGTCACAAGGCACTTACCAAGTTGACGCTC
TTGCCTCTGCGATATTGCGACGTCACTCGTCTTGACCTTTCGCCCTGCAA
GGGAGTGACTGACCAGTGGTTGCGCCCTTTTACCGACAAGACCCTTACGC
ATCTATGTCTAGCCTTCTGCAATGCTATTACGGACGCAGGTCTCCTTAAT
CTTACAGAGCTAGGTGGCTTACAGGTTGCTGACTTGACAGCTTGCGCAGG
CCTTAGGACCGGAGGCCTGGCGGCGTTTCGTGAGAGCTGGTCAATGACGA
GCTTGACGCTTAACGGATGCCGCAATTTGACTGATGAGGCTGTCAAGCCA
CTTGCATATTTATCAGCCCTGCAACATCTTCGCTTGCGCGGCTGCTGGCA
GCTGTCGGACGCAGCCTTGAacgccctggcccccctcATGCCACAGCTTA
AGACACTTGACGTCAACGCGTGCCGACAGTTTTCCTCAACCTCAATCTCT
TTTTGTGTGGGGAAAATGCGTGAGATCAGACACCTGGACCTGGGTTACTG
TCCAAGGGGAGTGGGTGGCGGGGCTTTAGAAGTTTTGACCCGCGGCCCGG
CCCCTACTACCTTGCAAGTCTTGATCTTGGACTCGTCTCGGAGTCTGTCG
AATGCGGACCTGTTCTCCCTCGGTAAGTTCCGTTGTCTTCAGCGCCTGAG
TCTCAGAAATTGCACTACCATCAGTGATGCTGGATTGTGCCAGCTACCTT
CGTCCCTTGAAACCCTGGACGCCTCCCACTGCCGGGGAgtccgtcgcctc
cccgcGCAGTCCCTACCTTGTCTACGCAGCGTCAACTTTGCTCACAGTGG
GCTTCGTGATTCGGACGTCGGGTCGCTAGCTGTGTTTCCAGCCCTCGTCA
ATATCAATTTAGACTCTTGTTCGATAGGAAATAGTGGTCTCGTCAGTCTG
CTCCCTTTGAAAAAATTGAAACGGCTGAACCTAGCTGATACAGGGGTCTC
GAATGGCGGGATGGACGTGCTGGCCAAATTGAGCTCATTATCGGTCATCT
CTTTGTTCTACACAAGTATCTCGGACTCTGGCGTGCGTCAATTGAGCGTA
TTGCAAAACCTGACAGACCTTAACCTCGACAATCGAGATCTTACAGATAC
CTCTCTCCTAcacctttcctctctcaccaAGCTCCGGCGCCTAGACATGT
TCTCTTCTCGCGTTTCTGATGTGGGGCTGTGCTTCATCACCTCGCTGGTT
GAGCTGGTAGACCTGGAGATTTGTGGTGGGCGCATTACTGATAAGGGATT
AGAATACATCTCCCAACTACCTTCACTGCAGCGATTAAATGTGAGCCAAA
ATGTTCAAATATCTAATTCGGGTCTGCATCATCTCGCATCTCTGAAAGAC
TTGGAAGCTTTAAACGTATCTCATAGTCAAGTCGCCGCGCCTGGTGCTTT
GAAACCGTTGTGCAGGCTCCGAGGCCTCAAAATACTCGCTGTTAACGGCT
GCCGCGGTATGGATGATACTACGTTGCACCAAATTCAGAGTTCTCTGCCG
AATCTACGCACGGTTAGGGCGGTCTCTTAAATGTCTCTTATCGACCTGTG
TATTGACTCCATCTGCCAAAATATACTCTGCTACGAGGTGCCTCCATCAT
TTGATGTTCTGCCGCCAGATTTGGTGCGCCGCATCTTCGACTCCTTGACA
AGTCACAAGGCACTTACCAAGTTGACGCTCTTGCCTCTGCGATATTGCGA
CGTCACTCGTCTTGACCTTTCGCCCTGCAAGGGAGTGACTGACCAGTGGT
TGCGCCCTTTTACCGACAAGACCCTTACGCATCTATGTCTAGCCTTCTGC
AATGCTATTACGGACGCAGGTCTCCTTAATCTTACAGAGCTAGGTGGCTT
ACAGGTTGCTGACTTGACAGCTTGCGCAGGCCTTAGGACCGGAGGCCTGG
CGGCGTTTCGTGAGAGCTGGTCAATGACGAGCTTGACGCTTAACGGATGC
CGCAATTTGACTGATGAGGCTGTCAAGCCACTTGCATATTTATCAGCCCT
GCAACATCTTCGCTTGCGCGGCTGCTGGCAGCTGTCGGACGCAGCCTTGA
acgccctggcccccctcATGCCACAGCTTAAGACACTTGACGTCAACGCG
TGCCGACAGTTTTCCTCAACCTCAATCTCTTTTTGTGTGGGGAAAATGCG
TGAGATCAGACACCTGGACCTGGGTTACTGTCCAAGGGGAGTGGGTGGCG
GGGCTTTAGAAGTTTTGACCCGCGGCCCGGCCCCTACTACCTTGCAAGTC
TTGATCTTGGACTCGTCTCGGAGTCTGTCGAATGCGGACCTGTTCTCCCT
CGGTAAGTTCCGTTGTCTTCAGCGCCTGAGTCTCAGAAATTGCACTACCA
TCAGTGATGCTGGATTGTGCCAGCTACCTTCGTCCCTTGAAACCCTGGAC
GCCTCCCACTGCCGGGGAgtccgtcgcctccccgcGCAGTCCCTACCTTG
TCTACGCAGCGTCAACTTTGCTCACAGTGGGCTTCGTGATTCGGACGTCG
GGTCGCTAGCTGTGTTTCCAGCCCTCGTCAATATCAATTTAGACTCTTGT
TCGATAGGAAATAGTGGTCTCGTCAGTCTGCTCCCTTTGAAAAAATTGAA
ACGGCTGAACCTAGCTGATACAGGGGTCTCGAATGGCGGGATGGACGTGC
TGGCCAAATTGAGCTCATTATCGGTCATCTCTTTGTTCTACACAAGTATC
TCGGACTCTGGCGTGCGTCAATTGAGCGTATTGCAAAACCTGACAGACCT
TAACCTCGACAATCGAGATCTTACAGATACCTCTCTCCTAcacctttcct
ctctcaccaAGCTCCGGCGCCTAGACATGTTCTCTTCTCGCGTTTCTGAT
GTGGGGCTGTGCTTCATCACCTCGCTGGTTGAGCTGGTAGACCTGGAGAT
TTGTGGTGGGCGCATTACTGATAAGGGATTAGAATACATCTCCCAACTAC
CTTCACTGCAGCGATTAAATGTGAGCCAAAATGTTCAAATATCTAATTCG
GGTCTGCATCATCTCGCATCTCTGAAAGACTTGGAAGCTTTAAACGTATC
TCATAGTCAAGTCGCCGCGCCTGGTGCTTTGAAACCGTTGTGCAGGCTCC
GAGGCCTCAAAATACTCGCTGTTAACGGCTGCCGCGGTATGGATGATACT
ACGTTGCACCAAATTCAGAGTTCTCTGCCGAATCTACGCACGGTTAGGGC
GGTCTCTTAAATGTCTCTTATCGACCTGTGTATTGACTCCATCTGCCAAA
ATATACTCTGCTACGAGGTGCCTCCATCATTTGATGTTCTGCCGCCAGAT
TTGGTGCGCCGCATCTTCGACTCCTTGACAAGTCACAAGGCACTTACCAA
GTTGACGCTCTTGCCTCTGCGATATTGCGACGTCACTCGTCTTGACCTTT
CGCCCTGCAAGGGAGTGACTGACCAGTGGTTGCGCCCTTTTACCGACAAG
ACCCTTACGCATCTATGTCTAGCCTTCTGCAATGCTATTACGGACGCAGG
TCTCCTTAATCTTACAGAGCTAGGTGGCTTACAGGTTGCTGACTTGACAG
CTTGCGCAGGCCTTAGGACCGGAGGCCTGGCGGCGTTTCGTGAGAGCTGG
TCAATGACGAGCTTGACGCTTAACGGATGCCGCAATTTGACTGATGAGGC
TGTCAAGCCACTTGCATATTTATCAGCCCTGCAACATCTTCGCTTGCGCG
GCTGCTGGCAGCTGTCGGACGCAGCCTTGAacgccctggcccccctcATG
CCACAGCTTAAGACACTTGACGTCAACGCGTGCCGACAGTTTTCCTCAAC
CTCAATCTCTTTTTGTGTGGGGAAAATGCGTGAGATCAGACACCTGGACC
TGGGTTACTGTCCAAGGGGAGTGGGTGGCGGGGCTTTAGAAGTTTTGACC
CGCGGCCCGGCCCCTACTACCTTGCAAGTCTTGATCTTGGACTCGTCTCG
GAGTCTGTCGAATGCGGACCTGTTCTCCCTCGGTAAGTTCCGTTGTCTTC
AGCGCCTGAGTCTCAGAAATTGCACTACCATCAGTGATGCTGGATTGTGC
CAGCTACCTTCGTCCCTTGAAACCCTGGACGCCTCCCACTGCCGGGGAgt
ccgtcgcctccccgcGCAGTCCCTACCTTGTCTACGCAGCGTCAACTTTG
CTCACAGTGGGCTTCGTGATTCGGACGTCGGGTCGCTAGCTGTGTTTCCA
GCCCTCGTCAATATCAATTTAGACTCTTGTTCGATAGGAAATAGTGGTCT
CGTCAGTCTGCTCCCTTTGAAAAAATTGAAACGGCTGAACCTAGCTGATA
CAGGGGTCTCGAATGGCGGGATGGACGTGCTGGCCAAATTGAGCTCATTA
TCGGTCATCTCTTTGTTCTACACAAGTATCTCGGACTCTGGCGTGCGTCA
ATTGAGCGTATTGCAAAACCTGACAGACCTTAACCTCGACAATCGAGATC
TTACAGATACCTCTCTCCTAcacctttcctctctcaccaAGCTCCGGCGC
CTAGACATGTTCTCTTCTCGCGTTTCTGATGTGGGGCTGTGCTTCATCAC
CTCGCTGGTTGAGCTGGTAGACCTGGAGATTTGTGGTGGGCGCATTACTG
ATAAGGGATTAGAATACATCTCCCAACTACCTTCACTGCAGCGATTAAAT
GTGAGCCAAAATGTTCAAATATCTAATTCGGGTCTGCATCATCTCGCATC
TCTGAAAGACTTGGAAGCTTTAAACGTATCTCATAGTCAAGTCGCCGCGC
CTGGTGCTTTGAAACCGTTGTGCAGGCTCCGAGGCCTCAAAATACTCGCT
GTTAACGGCTGCCGCGGTATGGATGATACTACGTTGCACCAAATTCAGAG
TTCTCTGCCGAATCTACGCACGGTTAGGGCGGTCTCTTAA back to top
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