rna8790, rna8790 (mRNA) Nannochloropsis gaditana

Overview
Namerna8790
Unique Namerna8790
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationKK037250.1:165703..167750 -

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100070g16.4241.mrna
Orig protein idgnl|cribi|Naga_100070g16.4241
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:165703..167750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100070g16gene8521Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21927.1cds8760Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8790rna8790-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8790 ID=rna8790|Name=rna8790|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGGCGTCCTTCGACTCAAGACAACTTCTAGGGTCCTCATTTATTTTTTG
GATACGACAGATTCCACTTCTATTCTTGCTTGTTCAACCTATCTATGGAG
GGCTGCAGCGTCACATGCGTGATGCAGCCTTCGACACCAGTGCGCTCGTT
GTAGATGGCATACCTTCCGGTCAAGAACCTCCCGCTACAGTTAACGTGGA
CTATCCCTTTCCGTACATAAATGGCCACCCCATCGACTCATGTTTATCCG
TGCTAGGAACGTCAGGGGACTGCGGTAGGATGGCAGCTGATTTCTTTTGC
CGCTTCCAAAACTGCGAGGCTGCCGTTTCATTCCAGGAGAGCTCCAGCGA
CCGCGGTCCTACATGGATTGCCGGCGACGAAACTATTCGTGACGCGGGGG
GAAAGTCGTTTGACAATATAACCTGTCAATGCTCTGTGCCAAATTCCATC
GCGCCAGGTTCGATTAACGGAAATCAAATAATTTACGAAAGCCCACGAAT
CCTGAACCATCCCGTAGACTTCTGCTTGGAAAAGAATAATGTGGCTTGCG
GTAAGCCTGCAGCCGACGCTTTCTGCGAGTCTTTCGGTAACTCAGGTAGT
ACACGATTTGTAGAGGACCCTAGACCTACATTGACGACGTGGCTTATTGG
CGATCATAGTGTGAGTGAGGCGCCCGATCGTCATTCATTCAGAAGCATCA
CTCAAGAGCGAGGGACCAAGACGATCAAGAATAACTCGAAAAACATTCTC
TCATCAGTGCAGAGTAGGGAGTATCGGCACGCACTCCATATTCTTTTTCA
CACACGAAAATAG
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protein sequence of rna8790

>rna8790-protein ID=rna8790-protein|Name=rna8790|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGP
SSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMR
SGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQ
SKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSA
VLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDD
ASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWW
SAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPND
DVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISP
KGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM
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mRNA from alignment at KK037250.1:165703..167750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8790 ID=rna8790|Name=rna8790|organism=Nannochloropsis gaditana|type=mRNA|length=2048bp|location=Sequence derived from alignment at KK037250.1:165703..167750- (Nannochloropsis gaditana)
AGAGCACAACTTAATTTGTTTTTTAAATGGCTATCTTGTCAGGGGCCGAC
AAGGACGCAACGTTCAGTGGCCTTCCTTCTTCCGCGAAACGTGCCATGCA
TTTGTCACTTATCACCAACATCCAGGGACGTGTGATAGTCAAGGCTTCTG
CAGCTATCAAAAAATATTTGTACCATATTGCGAATGATATACATACAATT
TTTCCACAAATTACAGTTCTCGTCGCACGAGTAGTGAGTATTTGCGCTGT
ACTCTTTCGATCCGCCCGGCTTGGCGTCGACCATCCCTGAAGCAATCGTA
GTGGTTTTTGGGGCATCTAAGCAGAACCTTCAAGTAATCATGGAGCAAAT
CGCGGCCCTTTCTTTGACTATTCCGCCCCAGCGTGCGTATTCCAGTACTT
CTGAAGGTAGTCCGTGTGTCTCTGGCTTGCCCAAAACTTTCCCCGAACGC
CGCTTTCTGTCTGGCTCGCCGCGCTCAATTCCTGGTCCCAGTAGTCCTGC
GTCATGGAAAGGTAGTCAAAGTAGCGTCCCGCTCGGCCCCACCGGTGCGG
GTACACCGAATGGTCGCATCATGTTGAATCGATTTAATACGTCGTCCCCG
CGTGCCCTTGGCCTCCGCTCGCCCATGTCGGGTATGAGGTCCGGGCTTGG
AGCAGGTTGGACACGAGCCATTGTGGATCTTTACAACGCGCAAGATCCCG
AACAAATGATCCGTTGTTTGCAAGAAATCCAATCTCTTCTTCGCACACAA
AAACTTGGCAAAGCGGGGGTTGCAAAGGAGCAGCAGCAGTCGAAGTTCTG
CAAAAAGGACCTGGAAGCAGCGCTGAACGAGAAGAAAAAAAAAAATCCTA
ATCTTTTTATCCCGGACGTACGCCGCCTCAGTTTAGAGGTGATGGCAGAG
TTTTTCGACAAGGATCGTGTGAACAAGCTTCCCTCGGCTGTCCTGATTTA
CACCGCTTCCTTCATGAGCATTTCTGAGCTAGGAATGGCGGCCAGTGTAT
GTCAGCAATGGAAAGAGACCGTACAGAGTGTTGCTGTGTGGAAGCCGCTT
TACATCAAGCGATTTCACTTTCTGCACTCACCAGACGATGCGAGCACGGG
CATTGGACTCCCGCTGTCGTATCAGGCGCTTTTCCGGGCGCGACTTCTAG
ACCCTCACGTTGGTGACCTCGTCGAAGTCGCGTGGAAGGGCAAATTTCGT
CTTGAATCCATGGATATTTATCAAGGGCTTGCGTGGTGGTCGGCTGTTGT
GGTGGAGAAGGGAGAAAATGGGGCGCGTTACAAGATCCATTATCCGGGCT
GGGACAGCCGGTGGGATGAGTGGGTAGCGCGTGATCGACTGCGCTGGACT
GTTGAGCAAGATCTCAACAAACGCATCATGCCTAACGATGACGTTGAAAT
CTGGTGCTGTGGCAGCAACGTCCCGGGCGCTTGGCTGGAGGCCAAGGTCC
GCAAAGTCAAGGGACAGACGTATTGCGTTGGGCGTGTTCTCTCCTCCGGT
GCTCTTTGGGTAAATAGGGAGCGTGTTCGTATATCTCCTAAAGGAGGCGC
TCGTTCCTTGGGCAAACAAGGTGCATCTAACTTTTTCTCACGCGATGCTG
CTGCTGCTGCTGCTGCCGTCGGAGCGAGTTGCTCAGTCATGTAAATAGTC
ACGAGTATCGACAGAAAACAATCGGAAGGTAGGCAGAAATGGGGATAGAG
AAGAAACCTCATAGAGCTTGCTTGATCCACGAATCTTCAAAGATCTCTTC
ATTCTTTTTGCGAGTCGGAGGCGTGTTCCAGAGCAACCGGGATAATTCAA
ATTGTTGCCCCTTTTCTTGTTTTCATATCAGGCATACCCCTGATGGCCTG
CATTATGAAGAGCAGCAATCCTGCATATATTTCGTGCGATGAGCTCTGGA
ACACATGCAGTGATTAAGAAGAAAAATTGTGGGAAGCATGTAAAAAATGC
TCTACGTGAAAATAAGTCACAATACATTTTTTTGTTTTTTTGGTTTATGC
TAGGTGAAATCTATGGTTGCATCGCTGCCATGGACAGAAATATCCTTT
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Coding sequence (CDS) from alignment at KK037250.1:165703..167750-

>rna8790 ID=rna8790|Name=rna8790|organism=Nannochloropsis gaditana|type=CDS|length=1305bp|location=Sequence derived from alignment at KK037250.1:165703..167750- (Nannochloropsis gaditana)
ATGGAGCAAATCGCGGCCCTTTCTTTGACTATTCCGCCCCAGCGTGCGTA
TTCCAGTACTTCTGAAGGTAGTCCGTGTGTCTCTGGCTTGCCCAAAACTT
TCCCCGAACGCCGCTTTCTGTCTGGCTCGCCGCGCTCAATTCCTGGTCCC
AGTAGTCCTGCGTCATGGAAAGGTAGTCAAAGTAGCGTCCCGCTCGGCCC
CACCGGTGCGGGTACACCGAATGGTCGCATCATGTTGAATCGATTTAATA
CGTCGTCCCCGCGTGCCCTTGGCCTCCGCTCGCCCATGTCGGGTATGAGG
TCCGGGCTTGGAGCAGGTTGGACACGAGCCATTGTGGATCTTTACAACGC
GCAAGATCCCGAACAAATGATCCGTTGTTTGCAAGAAATCCAATCTCTTC
TTCGCACACAAAAACTTGGCAAAGCGGGGGTTGCAAAGGAGCAGCAGCAG
TCGAAGTTCTGCAAAAAGGACCTGGAAGCAGCGCTGAACGAGAAGAAAAA
AAAAAATCCTAATCTTTTTATCCCGGACGTACGCCGCCTCAGTTTAGAGG
TGATGGCAGAGTTTTTCGACAAGGATCGTGTGAACAAGCTTCCCTCGGCT
GTCCTGATTTACACCGCTTCCTTCATGAGCATTTCTGAGCTAGGAATGGC
GGCCAGTGTATGTCAGCAATGGAAAGAGACCGTACAGAGTGTTGCTGTGT
GGAAGCCGCTTTACATCAAGCGATTTCACTTTCTGCACTCACCAGACGAT
GCGAGCACGGGCATTGGACTCCCGCTGTCGTATCAGGCGCTTTTCCGGGC
GCGACTTCTAGACCCTCACGTTGGTGACCTCGTCGAAGTCGCGTGGAAGG
GCAAATTTCGTCTTGAATCCATGGATATTTATCAAGGGCTTGCGTGGTGG
TCGGCTGTTGTGGTGGAGAAGGGAGAAAATGGGGCGCGTTACAAGATCCA
TTATCCGGGCTGGGACAGCCGGTGGGATGAGTGGGTAGCGCGTGATCGAC
TGCGCTGGACTGTTGAGCAAGATCTCAACAAACGCATCATGCCTAACGAT
GACGTTGAAATCTGGTGCTGTGGCAGCAACGTCCCGGGCGCTTGGCTGGA
GGCCAAGGTCCGCAAAGTCAAGGGACAGACGTATTGCGTTGGGCGTGTTC
TCTCCTCCGGTGCTCTTTGGGTAAATAGGGAGCGTGTTCGTATATCTCCT
AAAGGAGGCGCTCGTTCCTTGGGCAAACAAGGTGCATCTAACTTTTTCTC
ACGCGATGCTGCTGCTGCTGCTGCTGCCGTCGGAGCGAGTTGCTCAGTCA
TGTAA
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Synonyms
Publications