EWM21927.1, cds8760 (CDS) Nannochloropsis gaditana

Overview
NameEWM21927.1
Unique Namecds8760
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:166107..167411 -

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Properties
Property NameValue
Protein idEWM21927.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100070g16.4241.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:166107..167411 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromodomain-like
IPR001810F-box_dom
IPR025995Tudor-knot
Homology
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|585102273|gb|EWM21927.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query:    1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
            MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM
Sbjct:    1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434          
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|298711229|emb|CBJ32449.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 169.088 bits (427), Expect = 4.394e-45
Identity = 93/240 (38.75%), Postives = 124/240 (51.67%), Query Frame = 0
Query:  201 VLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPD----------------------------------DASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKR----IMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKG 402
            V+   A F       +   V Q ++E  +   +W+  Y +RF  L S                                    ++STG      ++  ++ RLLDPHVGD V+VAWKGKFRLES+++Y G AWW A VV+KGE    YK+HYPGW+ +WDEWV RDRLRW  E          +   D VE+WC G +VPGAWLEA V +V+ +   +G VL+SG  W   E VR+  KG
Sbjct:   52 VVAVAAKFKQEVTASLPLHVLQDFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDAGGGGCGPVDCREATATKPTASGRNSSTGDEKGDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKG 291          
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|299115908|emb|CBN75917.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 167.933 bits (424), Expect = 5.157e-45
Identity = 87/204 (42.65%), Postives = 124/204 (60.78%), Query Frame = 0
Query:  197 LPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALWVNRERVR 397
            LP  +L  +   +++ +LG    V + W+   +  AVW+  + +RF     P       G     + L R RL DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K  +G +YKIHYPGWDS WDEWV RDRLRW V+   L+      + VE+WC G++V GAWL+A+VR++K     +  VL+S    +WV R +VR
Sbjct:   29 LPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAG---HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-MDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVR 228          
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|298712316|emb|CBJ33111.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.4413 bits (241), Expect = 7.569e-20
Identity = 67/206 (32.52%), Postives = 90/206 (43.69%), Query Frame = 0
Query:  219 SVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQAL------------FRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVV---------------EKGENG---------------ARYKIHYPGWDSRWDEWVARDRLRWT----------VEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRK 372
            +V ++W     S  +W PLY +RF    S  +    +GL     A             FR+RL  P VGD VEVAWKGKFRL+   ++ GL+WW A VV               E GE+G                R+ +HY  W  RWDEW+   R+RW                   +  + + E+WC G +  GAWLEA+V K
Sbjct:    2 AVSRRWHRIGGSDFMWLPLYSRRFGPAASLPELFERVGLDPGDTAAASKRRSGMVRFAFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207          
The following BLAST results are available for this feature:
BLAST of EWM21927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585102273|gb|EWM21927.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|298711229|emb|CBJ32449.1|4.394e-4538.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|299115908|emb|CBN75917.1|5.157e-4542.65conserved unknown protein [Ectocarpus siliculosus][more]
gi|298712316|emb|CBJ33111.1|7.569e-2032.52expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8790rna8790Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications