EWM21927.1, cds8760 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|585102273|gb|EWM21927.1| (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0 Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query: 1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM
Sbjct: 1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSPRSIPGPSSPASWKGSQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|298711229|emb|CBJ32449.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 169.088 bits (427), Expect = 4.394e-45 Identity = 93/240 (38.75%), Postives = 124/240 (51.67%), Query Frame = 0
Query: 201 VLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPD----------------------------------DASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKR----IMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKG 402
V+ A F + V Q ++E + +W+ Y +RF L S ++STG ++ ++ RLLDPHVGD V+VAWKGKFRLES+++Y G AWW A VV+KGE YK+HYPGW+ +WDEWV RDRLRW E + D VE+WC G +VPGAWLEA V +V+ + +G VL+SG W E VR+ KG
Sbjct: 52 VVAVAAKFKQEVTASLPLHVLQDFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDAGGGGCGPVDCREATATKPTASGRNSSTGDEKGDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKG 291
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|299115908|emb|CBN75917.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 167.933 bits (424), Expect = 5.157e-45 Identity = 87/204 (42.65%), Postives = 124/204 (60.78%), Query Frame = 0
Query: 197 LPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALWVNRERVR 397
LP +L + +++ +LG V + W+ + AVW+ + +RF P G + L R RL DP VGD VEV+W+G+FRLES+D++ G +WW A VV+K +G +YKIHYPGWDS WDEWV RDRLRW V+ L+ + VE+WC G++V GAWL+A+VR++K + VL+S +WV R +VR
Sbjct: 29 LPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAG---HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-MDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVR 228
BLAST of EWM21927.1 vs. NCBI_GenBank
Match: gi|298712316|emb|CBJ33111.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.4413 bits (241), Expect = 7.569e-20 Identity = 67/206 (32.52%), Postives = 90/206 (43.69%), Query Frame = 0
Query: 219 SVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQAL------------FRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVV---------------EKGENG---------------ARYKIHYPGWDSRWDEWVARDRLRWT----------VEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRK 372
+V ++W S +W PLY +RF S + +GL A FR+RL P VGD VEVAWKGKFRL+ ++ GL+WW A VV E GE+G R+ +HY W RWDEW+ R+RW + + + E+WC G + GAWLEA+V K
Sbjct: 2 AVSRRWHRIGGSDFMWLPLYSRRFGPAASLPELFERVGLDPGDTAAASKRRSGMVRFAFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207 The following BLAST results are available for this feature:
BLAST of EWM21927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|