rna8786, rna8786 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8786
Unique Name	rna8786
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2621
Alignment location	KK037250.1:158031..160290 +

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, RING-type
Orig transcript id	gnl\|cribi\|Naga_100070g11.4224.mrna
Orig protein id	gnl\|cribi\|Naga_100070g11.4224
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:158031..160290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g11	gene8517	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8786	rna8786-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21910.1	cds8756	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:158031..160290+
coding sequence from alignment at KK037250.1:158031..160290+

mRNA sequence

>rna8786 ID=rna8786|Name=rna8786|organism=Nannochloropsis gaditana|type=mRNA|length=2621bp
TCGTGAAAGAGCCGCGTCAAGGCATCCACGTTTCATGAAGGAGCCTACAC
CACACGATTGGCCTGCGAAAGTGGCAATGGTTGCTGGGCTGACTAGGCAG
CCTGAGGGATGCCACGCCATCTTTAAGATCCTACTAATTCTTCGCGTATC
CCCTCTCCCCCAAGAAGAGCCATGCTCCTGCATCAATTTGAAGACATTTA
CCAGCATATTCGAGAAAATGCGCTTGAGGGGGCATGCACAGTGCTTGTGC
TTGTTGCTGCAGACGTAGACGGACTATGTGCCTGTCGTATTTTGACGCAC
ATGCTGCGGACGGATAATGTGGCATACTCGCTGGTACCCGTCTCCGGCTA
TTCGCACGCCTCTGCATTGCTGCGGGCTTTAAGCGAGAGCAACAATGACA
TCCGAAGCGTCGTGCTTATCAATTGTGGGGCCATTGTCAATGTGACTAAT
CTCCTGCCATGGGATCGACTTAATCTGACTTGTTACGTGATTGACTCCCA
CAGGCCAATCCACCTGGCTAACATCTACGAGCGCGAGCGTGTGTTCGTCC
TGCACGATGAAGAAGAAGACATGGACCTCACCTGCATACCAAGCGACGGA
GAAGGGCTCAGCGGTGGTGAGAATAGTGATGAAGAAGGGAGCATGGATGG
AGAGGGTGATGATAAACCCACGATAGGGGATGCGACCTCAGAGGACGAGG
AAGAACGGCGGCGACGACGGGAGGAAGTTGGAGAGTTTTCCGAGCTCGAA
AGCGAGGACGAACTGGATCTGGAGGATGCAAAAGGACGAGAGGTAGAAAT
TTGGAAACACAAAAGACACAACAAGAAGCGCGGGGAAGGTATAGCAAAGA
GAGGCAGAAGAGCAGAGGAGTCCTCGGAGGATGAAAGTGACGTGGGCGGG
GAGAGCCACGGGCTGCACGGAAGTGAAGAGGAAGAGAGCAACGAAAGCGA
AGATGAAAGTGGCCAGGAAAACGAAGAGGGTGGCATTTTGATTGACGAGT
CGGACGGAACATCACAGTCTGGTTCGGAGCGGAGTCGCCAGGCACATAAG
CCAGGAAAGCGAACGGGAGAGTCTAGCTTGGGCGCGCGGGAGCCAGCGCG
GCTCAAACGGAGACAAGAAAACAGAGCTCGACGGGAAAGACGGAGACGTA
TAGAGCAGTACTATATGGGAGCCTTTCATGGAGCGCCCTCGGCGCTGGTC
CTGCACCGCCTCAGCCAGGAAGTGAACCGGGACTCGAGGGACACGCTCTG
GCTCGCAATCGTAGGCCTGACCGACCTTCTCGTGCACCAGCGCATCGAGC
ACGTACACTATCGGCAGATGGTAGAGGGTCTAGAAATTGAGGTTCAAGCG
AGCCAGGCACAAATGCAGACGGGCTTTGAAGCATCGGATGGGACGCTAGT
ACCCACCAGCGAAGCAGGCCGCATCGTCGCAGATTTTGACTATCAGTTTA
TGCTCTACCGGCACTGGTCACTTTACGAGAGCATGTATCATTCTCCTTAC
GTAGCCTCTAAGCTGCTGGTGTGGTGGTCCCATGGGAAGCAGCGCCTAGA
AGAGCTTTTAGCCAAAATGGGGTTTTCTCTCGCCCAATGTCGTGAAAACT
TCAAGTACATGGATTCCGACCTCAAGGCTCAGTTACGCGAGGAGTTGGAC
AATTACCACGAAGAGTTTGGACTCGATGAAGTCTTCTACCTCTCCTTTCA
TCGCCGCACCCACTACGGGGCCGCCGTCAGCGCCTCGGACGTCGTCTACG
GTGTGGCTGCCCTGCTGGAGGCCTGGCAAGGCCCCGCAGGGAGCGACACT
GATCCATCTCTTGTTGGAGGAGCGTCCACGAACGTCACAGGCGTAAATCA
GGAGGACGAGGCAGCTGCGACAGGGCGGCTCTTTGTGGCTCGCTTTCACG
AGGCTTACGACGCGCTCTCAGGTCGAGATGAGGCGAAGCTGACCGAGGGT
ATCCATCTCGCCATGGCCTTGCAAAAGGCCATTTTCCGTGTTGCCGTTTC
TCTGCATGACAAAAAGGCCGTTCGAAACCTCGACCACTTTCGTTGGGCTG
TGATACATAACAATCTGGCGTCAGCGGAGGACTACCTGCTCACCCAACCG
ATGGCCATTTCCCGCCTCGCCCACCTAATGATCGATGTCAGCCGGGAAGA
AAAGATGCGACAGCAAGCAGCGAGCCAGAGTGGCCGCACTTTGTGGAAAC
CGAAGCCTCTTCTTATCTTCGCAGAGCGTCGTAGCACGTACTTGGTCGTC
GGCGTCTCCTGCCCGGACCAACGGGGGGAGGTGGTCAAGCATCGGTTCGC
GTCCCTCTTTCGCTTAGCGGCAGACGGCTGTAAAGCCAGGTATCGACACG
ATGGATTCGACTCGGCTGTCCTCGAGTTAGACAAAAACAGCGCCACCCGT
TTCACAGAGAGTTTGTTCCTCGCATGTGACGCTGCCCGCACGCCCAAAAA
AAGAACACGGAGATCTAATTGAAAAGTTTCCGACCATACAACGGAGGAAG
CTAGGGTACGTACCACGTATAGTCAACCTCTTAGAAAGAGACACCCGTAG
CCTTTGCGCTCCATAGTATGGACGATAATCGAGGCAAATTTGGGGAAAGA
AACATGCCAGTGTCGATCCCC

protein sequence of rna8786

>rna8786-protein ID=rna8786-protein|Name=rna8786|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSG
ECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSS
RLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDT
ETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF
RL

mRNA from alignment at KK037250.1:158031..160290+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8786 ID=rna8786|Name=rna8786|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp|location=Sequence derived from alignment at KK037250.1:158031..160290+ (Nannochloropsis gaditana)
GAGTAAGTACTCACTCAGACTGGAAAAGCATCAGCCAAGCAAGTGGCATG
TCAGAAGCAGTCCTCAAGAATATTGAGAAAGAACTGCCCAAACTACAGGC
TGAGCTAGCAAGTATAAAAGAAGCTGCACCCAAATCTGAAGCTTTGGTGG
ATCTTATCGATCATATTGTCAAAACGCACGAGCCATTTTACGAAAGTGCC
ATTCCCAAAAACCCCTGGCTCAAACCGGCCACCGGCCCCTGCTGCTGTTT
GCAGTAAAACGAAAGACAAAGTCGATAATATTCACCAAGGCATAACAATC
CAAACTGAAACAATAATACGAGCATCAAatcaaagaggagggaattCCGA
TCTCGGTCTATCGACAAGCCGTCAAGGAAAGCTCCGTTTTGTGAGAATTT
CAAGCGGCAGAGCTACATCTTGGGTCTCGCGGACATCCTCTGGAATAAAT
CTGTGCGCATGACTACATAATGTAAAGAAAACGACAAATTAACGCCTCAA
ACCGAGTCATCATGGCATTGAAGCCCACGCTTGACTCTCTGCCTTCTATC
CTTTTGTCCCGTATCCTGCGAGAGACTTCTTTTTCCGCGAAAACCCGGTC
GCTTAACTTCAACGCTCAAGCTAAGCTCAAGTCTTGCAAAGCTGCATGCT
CCCCAAAGAAtacttttccttcctcatcaatcGCGTGTAAGCCTCGTTGA
CATTACAACATCATCATAATCTAACAAATGGAAGGTGAGATAACCCGAAA
ATTTCTTCAAGCCTTTGTCTGGCCTCGCCTTAGTAGATGCTTCCCGGTAA
AGGCTTCACAGCTGTGCAGTGTACTACGTGTTCATGGTCTTCTTTAAAGT
TGTACTGCATACATGCGACTCGTTTTTTGGGGTATTCTTCACACTCTGCT
CCATTAAACTACGGTACGATACACTAGTTGCTAGGGCTGGCACCCATTTG
CATTTTCTGGCATTATGTGGATTTTGATCGTGATCATAAGTGCACTGAGC
GGGGCGGCGTTTCTGTACTGGCTACGAAGTCGCCTTCAATGCGGGATTCA
GCGCCGTGGTGATGATGCTGACATGCTATCGTTTCAAGCTGCGTGCTCCC
ACGCTCTGAGTGGCGAATGCTTTTCGTGGTATCGACAGTCTCGTACATCA
TCGCAATCATCATTTATTACTGGGAGAAGAAGTGGTGGAGTACGCCGATT
GATCGGACATCAGATTGCAGTCGAGGAGGGCATTGCGCTGTCTCGCAGGG
GCACGGATTCTTCCCGGCTGCAACTCATGTTAATGGATCGGGATTTCTCA
AGCGAAGACTACGAAGTTTTATCACGGCTGGATGAGGATGAACAGGACGC
TTGCCACTTGTTGGGAGCAACGGATGCAGAGCTGGAACGACTACCCACGT
ACATTGTGGATACAGAAACTAAGCTAAACAAATGCTTCATATGTTTAAAC
GACTTTTTGAAAGGCGAAGTTGTTAGAATCTTGCCATGTCTGCATCAATT
TCATCAATCTGAGTGCTGTGATCCGTGGTTGAGACGGAAGATGGAGTGCC
CAGTGTGCAAATTCAGGCTATAGCTCGTGCACTTTAATTGCCACTTGCGC
AACTCTCGGCTACGTATGTAGCTGTTTAAGAAAAGCCTGATGCGTGCAGC
AAAGAACCCTCTGTAAAATATATCGAAATGAAATAGCATATGTAAGTAAG
ACATGTATATCGACTATGGCCAATTTGACATTTGATCAAAGTAAAGATTG
gttatacatatatatatgtatatcttatatgtatatataatCATATATAT
AACAAAGCAGTCAGACAGCGAGTTTTTGGGGAGGCTTTAAATATAATCAC
CAGCCGTTTTAGCAAACACTTCCGCCTTCAGCTCTTTGGGCCTTCTCACC
AACCGCTCTACTTCAAGTCGAATGACATCTCTCATTCCTACGCCCTGTTA
TTATTTGCATTGTCGTCTCGCATAATCTCGCGTTTAAAGAAAGGATTTTG
TGTAAGAGACCAGATTTCACACTCTCCTTTCAAGATGTTACTCATGCTCG
CGTTTGCATCGCTGTTTCGACGGCAGCGGTGCTATCCCTCCAACTTTTGG
ATGACTTTCGTAGCCCCTTAACCCATTTTACAACACTCTTCAGCTCAGAA
TCAAAGTTAAGGGAGCCTCGATCAAACTTCATAGGCAGCATGTACCGAAC
CAGAACATAAGTTatacggaggacgaggtgggaCGTGCAGAAAGTTCGAC
AGAATAACGC

Coding sequence (CDS) from alignment at KK037250.1:158031..160290+

>rna8786 ID=rna8786|Name=rna8786|organism=Nannochloropsis gaditana|type=CDS|length=609bp|location=Sequence derived from alignment at KK037250.1:158031..160290+ (Nannochloropsis gaditana)
ATGTGGATTTTGATCGTGATCATAAGTGCACTGAGCGGGGCGGCGTTTCT
GTACTGGCTACGAAGTCGCCTTCAATGCGGGATTCAGCGCCGTGGTGATG
ATGCTGACATGCTATCGTTTCAAGCTGCGTGCTCCCACGCTCTGAGTGGC
GAATGCTTTTCGTGGTATCGACAGTCTCGTACATCATCGCAATCATCATT
TATTACTGGGAGAAGAAGTGGTGGAGTACGCCGATTGATCGGACATCAGA
TTGCAGTCGAGGAGGGCATTGCGCTGTCTCGCAGGGGCACGGATTCTTCC
CGGCTGCAACTCATGTTAATGGATCGGGATTTCTCAAGCGAAGACTACGA
AGTTTTATCACGGCTGGATGAGGATGAACAGGACGCTTGCCACTTGTTGG
GAGCAACGGATGCAGAGCTGGAACGACTACCCACGTACATTGTGGATACA
GAAACTAAGCTAAACAAATGCTTCATATGTTTAAACGACTTTTTGAAAGG
CGAAGTTGTTAGAATCTTGCCATGTCTGCATCAATTTCATCAATCTGAGT
GCTGTGATCCGTGGTTGAGACGGAAGATGGAGTGCCCAGTGTGCAAATTC
AGGCTATAG

Synonyms

Publications