EWM21910.1, cds8756 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|553196370|ref|XP_005856328.1| (zinc finger family protein [Nannochloropsis gaditana CCMP526] >gi|422292729|gb|EKU20031.1| zinc finger family protein [Nannochloropsis gaditana CCMP526] >gi|585102256|gb|EWM21910.1| Zinc finger, RING-type [Nannochloropsis gaditana]) HSP 1 Score: 413.69 bits (1062), Expect = 2.966e-146 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL 202
MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL
Sbjct: 1 MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL 202
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|299471057|emb|CBN78917.1| (protein binding / ubiquitin-protein ligase/ zinc ion binding [Ectocarpus siliculosus]) HSP 1 Score: 112.079 bits (279), Expect = 4.184e-27 Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 0
Query: 85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
A+E + L G + RL+L+L+DRDF+ EDY+ L LD D D +GA++ E+ R P++++ D+ K C ICL F E VRI+PCLHQFH +EC DPWLR+ CPVCKF
Sbjct: 113 ALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD-DNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPRERVRIIPCLHQFH-TECIDPWLRQNAICPVCKF 231
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|1173934128|gb|OQR85603.1| (hypothetical protein ACHHYP_20563 [Achlya hypogyna]) HSP 1 Score: 97.4413 bits (241), Expect = 8.043e-22 Identity = 52/112 (46.43%), Postives = 65/112 (58.04%), Query Frame = 0
Query: 100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
+ LQL+L DRDF S DYE L +LD+ H GA+D E++RLP V TE+ L +C ICL D G R++PC H+FH EC DPWL K ECP+CKF
Sbjct: 80 AHLQLLLTDRDFDSNDYEQLLQLDDHNVQKSH--GASDGEIDRLPVVTV-TESMLKGHKDTTGLENIQCSICLEDLTLGSQARMVPCFHRFH-PECIDPWLSEKAECPICKF 187
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|698796738|ref|XP_009831398.1| (hypothetical protein H257_07533 [Aphanomyces astaci] >gi|574113189|gb|ETV78679.1| hypothetical protein H257_07533 [Aphanomyces astaci]) HSP 1 Score: 95.9005 bits (237), Expect = 4.467e-21 Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0
Query: 99 SSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
S + L+L DRDF S DYE L LDE+ H GATD E+ RLP + +E+ LN KC ICL + + G R++PC H+FH C DPWL+ K ECP+CK+
Sbjct: 97 PSEINLLLTDRDFDSNDYERLLLLDENNVKKSH--GATDFEINRLPV-VTMSESMLNASKGGVVEDSKCSICLEELVVGTKARMVPCFHRFHPG-CIDPWLKDKAECPICKY 204
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|669157392|ref|XP_008614258.1| (hypothetical protein SDRG_10064 [Saprolegnia diclina VS20] >gi|530734075|gb|EQC32317.1| hypothetical protein SDRG_10064 [Saprolegnia diclina VS20]) HSP 1 Score: 94.3597 bits (233), Expect = 1.344e-20 Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0
Query: 100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
+ LQL+L DRDF S DYE L +LD+ H GA++ +++RLP V TET L +C ICL D G R++PC H+FH +C DPWL K ECP+CKF
Sbjct: 83 AHLQLLLTDRDFDSNDYEQLLQLDDHNVAKSH--GASEGDIDRLPVVTV-TETMLQSHKEATGYETIQCSICLEDLAVGAQARMVPCFHRFH-PQCIDPWLVEKAECPICKF 190
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|813199902|ref|XP_012209522.1| (hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65] >gi|641525287|gb|KDO19760.1| hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 93.5893 bits (231), Expect = 2.416e-20 Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0
Query: 100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
+ LQL+L DRDF S DYE L +LDE H GA++ +++RLP V TET L +C ICL D G + R++PC H+FH EC D WL K ECP+CKF
Sbjct: 84 AHLQLLLTDRDFDSNDYEQLLQLDEHNVAKSH--GASEGDIDRLPVVTV-TETMLQGHKEATGSDAIQCSICLEDLAVGALARMVPCFHRFH-PECIDLWLFEKAECPICKF 191
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570088|ref|XP_011462509.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X1 [Fragaria vesca subsp. vesca] >gi|764570092|ref|XP_011462510.1| PREDICTED: uncharacterized protein LOC101292007 isoform X1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 94.3597 bits (233), Expect = 5.796e-19 Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query: 103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
+ + RDF++ DYE+L LDE+ L GAT ++ LP V T+ C ICL GE VR LPCLH+FH+ +C DPWL RK CPVCK
Sbjct: 702 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 794
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570096|ref|XP_011462511.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 94.3597 bits (233), Expect = 5.835e-19 Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query: 103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
+ + RDF++ DYE+L LDE+ L GAT ++ LP V T+ C ICL GE VR LPCLH+FH+ +C DPWL RK CPVCK
Sbjct: 691 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 783
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570099|ref|XP_011462512.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 93.9745 bits (232), Expect = 7.677e-19 Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query: 103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
+ + RDF++ DYE+L LDE+ L GAT ++ LP V T+ C ICL GE VR LPCLH+FH+ +C DPWL RK CPVCK
Sbjct: 676 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 768
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|674242037|gb|KFK34802.1| (hypothetical protein AALP_AA5G195200 [Arabis alpina]) HSP 1 Score: 91.2781 bits (225), Expect = 9.064e-19 Identity = 56/150 (37.33%), Postives = 73/150 (48.67%), Query Frame = 0
Query: 83 QIAVEEGIALSRRG-TDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTY---IVDTETKLNK---------------------------CFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFR 201
++ V IAL+ RG RLQL L+DR+F DYE L LD D + ++ E+ LP + + D E L+K C +CL GE+VR LPCLHQFH + C DPWLR++ CPVCKFR
Sbjct: 106 RLHVPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTTSM---SEEEINALPVHKYKVFDPENSLSKQASTSSSTEKMQDSVNGSKKGTEDELTCSVCLEQVNVGEIVRTLPCLHQFH-AGCIDPWLRQQGTCPVCKFR 251 The following BLAST results are available for this feature:
BLAST of EWM21910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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