EWM21910.1, cds8756 (CDS) Nannochloropsis gaditana

Overview
NameEWM21910.1
Unique Namecds8756
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:158995..159603 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21910.1
ProductZinc finger, RING-type
Orig transcript idgnl|cribi|Naga_100070g11.4224.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:158995..159603 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|553196370|ref|XP_005856328.1| (zinc finger family protein [Nannochloropsis gaditana CCMP526] >gi|422292729|gb|EKU20031.1| zinc finger family protein [Nannochloropsis gaditana CCMP526] >gi|585102256|gb|EWM21910.1| Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 413.69 bits (1062), Expect = 2.966e-146
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL 202
            MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL
Sbjct:    1 MWILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQSSFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFRL 202          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|299471057|emb|CBN78917.1| (protein binding / ubiquitin-protein ligase/ zinc ion binding [Ectocarpus siliculosus])

HSP 1 Score: 112.079 bits (279), Expect = 4.184e-27
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 0
Query:   85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
            A+E  + L   G +  RL+L+L+DRDF+ EDY+ L  LD D  D    +GA++ E+ R P++++     D+  K   C ICL  F   E VRI+PCLHQFH +EC DPWLR+   CPVCKF
Sbjct:  113 ALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLD-DNNDVPSTVGASEGEIRRNPSFVIPEPAADSVVKPKNCSICLYPFKPRERVRIIPCLHQFH-TECIDPWLRQNAICPVCKF 231          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|1173934128|gb|OQR85603.1| (hypothetical protein ACHHYP_20563 [Achlya hypogyna])

HSP 1 Score: 97.4413 bits (241), Expect = 8.043e-22
Identity = 52/112 (46.43%), Postives = 65/112 (58.04%), Query Frame = 0
Query:  100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
            + LQL+L DRDF S DYE L +LD+      H  GA+D E++RLP   V TE+ L            +C ICL D   G   R++PC H+FH  EC DPWL  K ECP+CKF
Sbjct:   80 AHLQLLLTDRDFDSNDYEQLLQLDDHNVQKSH--GASDGEIDRLPVVTV-TESMLKGHKDTTGLENIQCSICLEDLTLGSQARMVPCFHRFH-PECIDPWLSEKAECPICKF 187          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|698796738|ref|XP_009831398.1| (hypothetical protein H257_07533 [Aphanomyces astaci] >gi|574113189|gb|ETV78679.1| hypothetical protein H257_07533 [Aphanomyces astaci])

HSP 1 Score: 95.9005 bits (237), Expect = 4.467e-21
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0
Query:   99 SSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
             S + L+L DRDF S DYE L  LDE+     H  GATD E+ RLP  +  +E+ LN          KC ICL + + G   R++PC H+FH   C DPWL+ K ECP+CK+
Sbjct:   97 PSEINLLLTDRDFDSNDYERLLLLDENNVKKSH--GATDFEINRLPV-VTMSESMLNASKGGVVEDSKCSICLEELVVGTKARMVPCFHRFHPG-CIDPWLKDKAECPICKY 204          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|669157392|ref|XP_008614258.1| (hypothetical protein SDRG_10064 [Saprolegnia diclina VS20] >gi|530734075|gb|EQC32317.1| hypothetical protein SDRG_10064 [Saprolegnia diclina VS20])

HSP 1 Score: 94.3597 bits (233), Expect = 1.344e-20
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0
Query:  100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
            + LQL+L DRDF S DYE L +LD+      H  GA++ +++RLP   V TET L            +C ICL D   G   R++PC H+FH  +C DPWL  K ECP+CKF
Sbjct:   83 AHLQLLLTDRDFDSNDYEQLLQLDDHNVAKSH--GASEGDIDRLPVVTV-TETMLQSHKEATGYETIQCSICLEDLAVGAQARMVPCFHRFH-PQCIDPWLVEKAECPICKF 190          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|813199902|ref|XP_012209522.1| (hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65] >gi|641525287|gb|KDO19760.1| hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.5893 bits (231), Expect = 2.416e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0
Query:  100 SRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLN-----------KCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
            + LQL+L DRDF S DYE L +LDE      H  GA++ +++RLP   V TET L            +C ICL D   G + R++PC H+FH  EC D WL  K ECP+CKF
Sbjct:   84 AHLQLLLTDRDFDSNDYEQLLQLDEHNVAKSH--GASEGDIDRLPVVTV-TETMLQGHKEATGSDAIQCSICLEDLAVGALARMVPCFHRFH-PECIDLWLFEKAECPICKF 191          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570088|ref|XP_011462509.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X1 [Fragaria vesca subsp. vesca] >gi|764570092|ref|XP_011462510.1| PREDICTED: uncharacterized protein LOC101292007 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 94.3597 bits (233), Expect = 5.796e-19
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query:  103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
             +  + RDF++ DYE+L  LDE+      L GAT  ++  LP   V T+     C ICL     GE VR LPCLH+FH+ +C DPWL RK  CPVCK
Sbjct:  702 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 794          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570096|ref|XP_011462511.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 94.3597 bits (233), Expect = 5.835e-19
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query:  103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
             +  + RDF++ DYE+L  LDE+      L GAT  ++  LP   V T+     C ICL     GE VR LPCLH+FH+ +C DPWL RK  CPVCK
Sbjct:  691 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 783          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|764570099|ref|XP_011462512.1| (PREDICTED: uncharacterized protein LOC101292007 isoform X3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 93.9745 bits (232), Expect = 7.677e-19
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query:  103 QLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIVDTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199
             +  + RDF++ DYE+L  LDE+      L GAT  ++  LP   V T+     C ICL     GE VR LPCLH+FH+ +C DPWL RK  CPVCK
Sbjct:  676 HMFQLQRDFTANDYEMLLALDENNH---QLGGATANQINNLPQSTVQTDASEEACAICLETPTLGETVRHLPCLHRFHK-DCIDPWLNRKTSCPVCK 768          
BLAST of EWM21910.1 vs. NCBI_GenBank
Match: gi|674242037|gb|KFK34802.1| (hypothetical protein AALP_AA5G195200 [Arabis alpina])

HSP 1 Score: 91.2781 bits (225), Expect = 9.064e-19
Identity = 56/150 (37.33%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   83 QIAVEEGIALSRRG-TDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTY---IVDTETKLNK---------------------------CFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKFR 201
            ++ V   IAL+ RG     RLQL L+DR+F   DYE L  LD D      +   ++ E+  LP +   + D E  L+K                           C +CL     GE+VR LPCLHQFH + C DPWLR++  CPVCKFR
Sbjct:  106 RLHVPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTTSM---SEEEINALPVHKYKVFDPENSLSKQASTSSSTEKMQDSVNGSKKGTEDELTCSVCLEQVNVGEIVRTLPCLHQFH-AGCIDPWLRQQGTCPVCKFR 251          
The following BLAST results are available for this feature:
BLAST of EWM21910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196370|ref|XP_005856328.1|2.966e-146100.00zinc finger family protein [Nannochloropsis gadita... [more]
gi|299471057|emb|CBN78917.1|4.184e-2746.28protein binding / ubiquitin-protein ligase/ zinc i... [more]
gi|1173934128|gb|OQR85603.1|8.043e-2246.43hypothetical protein ACHHYP_20563 [Achlya hypogyna... [more]
gi|698796738|ref|XP_009831398.1|4.467e-2144.64hypothetical protein H257_07533 [Aphanomyces astac... [more]
gi|669157392|ref|XP_008614258.1|1.344e-2044.64hypothetical protein SDRG_10064 [Saprolegnia dicli... [more]
gi|813199902|ref|XP_012209522.1|2.416e-2045.54hypothetical protein SPRG_15094 [Saprolegnia paras... [more]
gi|764570088|ref|XP_011462509.1|5.796e-1946.39PREDICTED: uncharacterized protein LOC101292007 is... [more]
gi|764570096|ref|XP_011462511.1|5.835e-1946.39PREDICTED: uncharacterized protein LOC101292007 is... [more]
gi|764570099|ref|XP_011462512.1|7.677e-1946.39PREDICTED: uncharacterized protein LOC101292007 is... [more]
gi|674242037|gb|KFK34802.1|9.064e-1937.33hypothetical protein AALP_AA5G195200 [Arabis alpin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8786rna8786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications