rna8784, rna8784 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8784
Unique Name	rna8784
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1990
Alignment location	KK037250.1:152992..154185 -

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein
Orig transcript id	gnl\|cribi\|Naga_100070g9.4215.mrna
Orig protein id	gnl\|cribi\|Naga_100070g9.4215
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:152992..154185 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g9	gene8515	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8784	rna8784-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21901.1	cds8754	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:152992..154185-
coding sequence from alignment at KK037250.1:152992..154185-

mRNA sequence

>rna8784 ID=rna8784|Name=rna8784|organism=Nannochloropsis gaditana|type=mRNA|length=1990bp
TGCACCGAAATTAAAGGCAACCAGTCAAAGTTGCTTATGCATCCATGACC
GACATAATCATAACGATTTTACAAAGATGTGAACTCACCGTTGGCATTTT
AAGTTACTTTCAACAGGGGGTGTCAATGCCTGCCAGTTTGCTGGAAAGCA
AGAAGGGTTAGGATCATACTGTCCCAAATGTACCCCATGTGGACACATGC
TTTTCCCTCTATTCATGCTGCCCAAATAAATTCAGCGTTGGGAAAGAGCG
AGTATACTTGACAGCCTTAGACTTCATTTCTATCATGTATCCTATTAGAA
ACTTCTTTCAATACTTCCTGAAACTGGCAGCGCCTTGATGTATTGTGGGG
ACGAAGTATTTTCCGTCGTTGGCGACTTGGGCACGCAGAGTAGCCGCTTC
GGGTATGCAGGTGAAGATTTGCCCAAGGTTGTCTTCCCCTCGGCAATAGG
AAATGTGGTCCATAGAACAGGTAGCGAAGAAGATGGCGACAGAAAGAAGA
AGAGCACTGGCGGGGCCAGCAGCGATGTGGAAGGTGCGGTCGTTGCAAAG
ACGAAGGCCAACACGTCTGGGACGCTGGGGGAAGCCAACATAGGGATACG
GCGCACAGATTTGGAGCTGTCATTCCCCCTTATAAATGGACACGTGCAAG
ACTGGGATGCTGTGGAATGCATTTGGGCCCACGCCTTTGAGCAATTGTCC
GTGAAAGAGGGCGCCAAGGGCGTGCCTTACATGTATGCACTGCCAGCTTG
GGCCTCGCGCGCCGAGAGCCAGAAGTCGGCCGAGTTGGCGTTTGAGCGAT
TTGATCTAGGTGCTTTGTATCTAGCCCGTTCGCCTATGCTAAGCGCTTTC
TCAACCGGTCGGTCCAGTGGGGTGGTGTGCGACTGTGGGGCGGGGTCGAC
AAGCGCTGTGCCTATCTTAGATGGCTACGTCCTGAACCAATTAGTGGGGC
GGAGCGAGCGCGGAGGAGATTGGTTGGATGGTAAAGTAGGCGAGTGGTTA
GAGTCGAGAAAGGCAAAGATAGGGCTTTTCGGCTTCGAGAGAGGTACTAT
TCCTGAATATATGCCGACAACATACTGGCGGTTTCAAGAGCAGCGTGTGC
TGCGAGACGTGAAGGAAAGCTGCTGCTTGATCCCACAGGTTGACAGTGAC
GATGGGGCTGTATTTGACATTGAAGAGAACGACGCAGAGAAGGGCGCGTA
TGAGCTGCCGGATGGAACGCGGGTGAAGGCGGATAAGACGCTGTGCAGGA
TACCCGAGCTCCTGATGGTGCGTGGGGACGGCGCGGGCTGCTCAATCTCG
CCCGCAGACGTTTCTCCGTCACGCGAAGGAGCTTTTCATGACTTGCCGAG
CATGGTCTATACAGCAGTAGAGAAGGCAGACGTGGATGTGCGCAAGGAGC
TGTTGGGAAACGTAATACTTACGGGTGGAGGCAGCTGCTTCCGAGGGTCT
TCGGAGCGGCTGCAATATGAGCTGACGGAGAAGGTCCCGGTGGCCTACAA
GGTCAAGATCGTGACAGCCACACCTTTGGAACGCCGCTTTAGTGCTTGGA
TTGGGGGTTCCATCCTGGCCTCACTCGGCTCTTTCCAGCAACTGTGGCTG
TCCAAAGCGGAATATGAGGAGATGGGGGCGGAGCTTGCTTGCAAGAAGAG
ATTTCATTAGAGCGACAAACTTTGTGAAACATAAAACAAAATGCAAATGA
AATAATATAAGACCACGCAAGAGAGAGCGAGCCAAATTAAAATTATTTGG
AGAACCCTCAGCCATGCTGTGTGTCGTAAAGGTTCACTTTCTCAATCCTT
ATGTGGAGAATGATGGATCCAAGATTGAGGTATCGGTAAAGTCCGATTCT
TTTCCAGTCTTATCATCATTTTTTAGGTCCAGCGTCACCAATTACAGCAA
TTGCACTTTTCTCACTCGCCTCGTCGTGCCTCACACTAGGAGAGACAAAT
GCCGAGGAAAACGCGCCGCTAGATAGTTTCACCAGAACCC

protein sequence of rna8784

>rna8784-protein ID=rna8784-protein|Name=rna8784|organism=Nannochloropsis gaditana|type=polypeptide|length=375bp
MKMRLEDAYEVLEIRVGASEEEVRRAFRVKALATHPDRNPDKPDAKAAFQ
RVSNAYKRITAPDEGEDEGESEDEGEEYMAEEDLFELFESMFGPRRVPFG
VARRDPMGETAFQMMFKSGGPFGRFDLFDGGDSSGDYEESCDSEEISYDV
ELEESESEGDNKLDTFHEILFLQHLMSDGGHSRYGGRGSGRVFDEDDAFD
YGNIEVTRRAQSGHGREADNRRGRNRPGSPPARRARDEFHRQGPAARPHP
APHGAVPASCTSGVRDHLDGKEQRKCEPSQSAKRRARRMKARQAGIGVST
SRSDGKREASASAASKTAQKASFRTSAPRSDTLAWVLVKLSSGAFSSAFV
SPSVRHDEASEKSAIAVIGDAGPKK

mRNA from alignment at KK037250.1:152992..154185-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8784 ID=rna8784|Name=rna8784|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at KK037250.1:152992..154185- (Nannochloropsis gaditana)
ATGAAGATGAGGCTGGAGGATGCGTATGAAGTGCTGGAAATCCGCGTCGG
GGCAAGCGAAGAGGAGGTGAGAAGGGCCTTCCGCGTTAAAGCCCTAGCTA
CACACCCGGATCGCAATCCTGACAAACCAGACGCCAAGGCAGCTTTTCAA
AGGGTTAGTAACGCTTATAAACGGATTACAGCTCCAGATGAAGGAGAGGA
CGAAGGGGAAAGTGAGGATGAGGGTGAGGAATATATGGCTGAAGAAGACT
TGTTCGAGCTTTTCGAATCCATGTTTGGTCCACGCAGAGTGCCGTTCGGA
GTCGCGAGAAGAGACCCTATGGGGGAAACCGCATTTCAGATGATGTTTAA
GAGCGGCGGACCGTTTGGCCGTTTTGATCTCTTCGACGGGGGGGATTCCA
GTGGAGACTACGAAGAGTCGTGCGACAGCGAGGAAATCTCGTACGATGTG
GAGCTGGAGGAAAGCGAGAGCGAGGGTGACAATAAACTCGACACCTTCCA
CGAAATATTATTTTTGCAACACTTAATGAGTGATGGGGGCCACAGCAGAT
ATGGAGGGCGAGGCAGCGGCCGGGTTTTTGATGAGGACGATGCATTTGAC
TATGGAAATATTGAGGTCACGCGACGAGCCCAATCGGGGCATGGGAGAGA
AGCGGATAATCGCCGAGGTAGAAATAGGCCTGGAAGTCCACCAGCCCGTC
GAGCCAGAGACGAGTTTCATAGGCAGGGCCCTGCGGCTCGACCACACCCA
GCGCCGCATGGAGCTGTTCCTGCATCATGCACCAGCGGAGTGCGGGATCA
TCTGGATGGAAAGGAGCAACGGAAATGTGAGCCCAGCCAGAGTGCAAAGC
GGCGGGCTCGTCGCATGAAAGCTCGACAAGCGGGGATCGGTGTCAGTACC
AGTCGGAGTGACGGGAAAAGAGAGGCTTCTGCGTCGGCTGCCTCGAAAAC
TGCTCGTTCTTCCTTGGAGAGAAACAGCGAAAAAAAGAAGATGAAGAGGA
AGAAATGTGAGGTGTGAAAAGAGAAGGCAAGCTTCCGTACGTCAGCTCCG
CGTTCAGATACCTTAGCTTGGGTTCTGGTGAAACTATCTAGCGGCGCGTT
TTCCTCGGCATTTGTCTCTCCTAGTGTGAGGCACGACGAGGCGAGTGAGA
AAAGTGCAATTGCTGTAATTGGTGACGCTGGACCTAAAAAATGA

Coding sequence (CDS) from alignment at KK037250.1:152992..154185-

>rna8784 ID=rna8784|Name=rna8784|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at KK037250.1:152992..154185- (Nannochloropsis gaditana)
AGAAGGCAAGCTTCCGTACGTCAGCTCCGCGTTCAGATACCTTAGCTTGG
GTTCTGGTGAAACTATCTAGCGGCGCGTTTTCCTCGGCATTTGTCTCTCC
TAGTGTGAGGCACGACGAGGCGAGTGAGAAAAGTGCAATTGCTGTAATTG
GTGACGCTGGACCTAAAAAATGAATGAAGATGAGGCTGGAGGATGCGTAT
GAAGTGCTGGAAATCCGCGTCGGGGCAAGCGAAGAGGAGGTGAGAAGGGC
CTTCCGCGTTAAAGCCCTAGCTACACACCCGGATCGCAATCCTGACAAAC
CAGACGCCAAGGCAGCTTTTCAAAGGGTTAGTAACGCTTATAAACGGATT
ACAGCTCCAGATGAAGGAGAGGACGAAGGGGAAAGTGAGGATGAGGGTGA
GGAATATATGGCTGAAGAAGACTTGTTCGAGCTTTTCGAATCCATGTTTG
GTCCACGCAGAGTGCCGTTCGGAGTCGCGAGAAGAGACCCTATGGGGGAA
ACCGCATTTCAGATGATGTTTAAGAGCGGCGGACCGTTTGGCCGTTTTGA
TCTCTTCGACGGGGGGGATTCCAGTGGAGACTACGAAGAGTCGTGCGACA
GCGAGGAAATCTCGTACGATGTGGAGCTGGAGGAAAGCGAGAGCGAGGGT
GACAATAAACTCGACACCTTCCACGAAATATTATTTTTGCAACACTTAAT
GAGTGATGGGGGCCACAGCAGATATGGAGGGCGAGGCAGCGGCCGGGTTT
TTGATGAGGACGATGCATTTGACTATGGAAATATTGAGGTCACGCGACGA
GCCCAATCGGGGCATGGGAGAGAAGCGGATAATCGCCGAGGTAGAAATAG
GCCTGGAAGTCCACCAGCCCGTCGAGCCAGAGACGAGTTTCATAGGCAGG
GCCCTGCGGCTCGACCACACCCAGCGCCGCATGGAGCTGTTCCTGCATCA
TGCACCAGCGGAGTGCGGGATCATCTGGATGGAAAGGAGCAACGGAAATG
TGAGCCCAGCCAGAGTGCAAAGCGGCGGGCTCGTCGCATGAAAGCTCGAC
AAGCGGGGATCGGTGTCAGTACCAGTCGGAGTGACGGGAAAAGAGAGGCT
TCTGCGTCGGCTGCCTCGAAAACTGCTCAGAAGGCAAGCTTCCGTACGTC
AGCTCCGCGTTCAGATACCTTAGCTTGGGTTCTGGTGAAACTATCTAGCG
GCGCGTTTTCCTCGGCATTTGTCTCTCCTAGTGTGAGGCACGACGAGGCG
AGTGAGAAAAGTGCAATTGCTGTAATTGGTGACGCTGGACCTAAAAAATG
AATGAAGATGAGGCTGGAGGATGCGTATGAAGTGCTGGAAATCCGCGTCG
GGGCAAGCGAAGAGGAGGTGAGAAGGGCCTTCCGCGTTAAAGCCCTAGCT
ACACACCCGGATCGCAATCCTGACAAACCAGACGCCAAGGCAGCTTTTCA
AAGGGTTAGTAACGCTTATAAACGGATTACAGCTCCAGATGAAGGAGAGG
ACGAAGGGGAAAGTGAGGATGAGGGTGAGGAATATATGGCTGAAGAAGAC
TTGTTCGAGCTTTTCGAATCCATGTTTGGTCCACGCAGAGTGCCGTTCGG
AGTCGCGAGAAGAGACCCTATGGGGGAAACCGCATTTCAGATGATGTTTA
AGAGCGGCGGACCGTTTGGCCGTTTTGATCTCTTCGACGGGGGGGATTCC
AGTGGAGACTACGAAGAGTCGTGCGACAGCGAGGAAATCTCGTACGATGT
GGAGCTGGAGGAAAGCGAGAGCGAGGGTGACAATAAACTCGACACCTTCC
ACGAAATATTATTTTTGCAACACTTAATGAGTGATGGGGGCCACAGCAGA
TATGGAGGGCGAGGCAGCGGCCGGGTTTTTGATGAGGACGATGCATTTGA
CTATGGAAATATTGAGGTCACGCGACGAGCCCAATCGGGGCATGGGAGAG
AAGCGGATAATCGCCGAGGTAGAAATAGGCCTGGAAGTCCACCAGCCCGT
CGAGCCAGAGACGAGTTTCATAGGCAGGGCCCTGCGGCTCGACCACACCC
AGCGCCGCATGGAGCTGTTCCTGCATCATGCACCAGCGGAGTGCGGGATC
ATCTGGATGGAAAGGAGCAACGGAAATGTGAGCCCAGCCAGAGTGCAAAG
CGGCGGGCTCGTCGCATGAAAGCTCGACAAGCGGGGATCGGTGTCAGTAC
CAGTCGGAGTGACGGGAAAAGAGAGGCTTCTGCGTCGGCTGCCTCGAAAA
CTGCTC

Synonyms

Publications