rna878, rna878 (mRNA) Nannochloropsis gaditana

Overview
Namerna878
Unique Namerna878
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length969
Alignment locationCM002456.1:627709..629120 +

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Properties
Property NameValue
Productmethionyl-trna
Orig transcript idgnl|cribi|Naga_100017g70.282.mrna
Orig protein idgnl|cribi|Naga_100017g70.282
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:627709..629120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g70gene841Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna878rna878-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29784.1cds878Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna878 ID=rna878|Name=rna878|organism=Nannochloropsis gaditana|type=mRNA|length=969bp
ATGAAAAACACTGGCTTTTTTCCTGTTCGCATTCGAGACGAACGGCAAAG
AACCCAAGGGAACACATGTACATCCACAGGTAGAGCAAAGAAGCATTCTA
ACACTTGCAGCATGGATAGGATGGACGCATGCAGCACCTGGTCTTCGCAA
TTGGTTTATGTCTTGCTGTTTTTTGCGAGTGGGGTTCGGGCCGCAGGTAT
AGGATATTATGCTGACACCTCCAATTGCAACGCTGCTTTTCAGCCATGTC
CTGCACCACTAATAACCCCGTCGTCCCTCCCGCTGCTCTCACGGCGGCAG
GATCTTCTCGAAAGTAGACGGGCACATGGGCGACGAAAAGAATTCTTTTT
AACGGTGGCAAGAGGCAAAGGCTTCGGCAAAAAGCCAAGAGGGGATGGAG
AGGAGGACGGGAAGCAGGATGGAGCTCAGGAGGCCAGCAAGGTGGAGGAG
GGACCGAGCATCATTCGACCCACTTTCAGTCATCGCGGTAGCAGCGCAAA
TGCGGCTGGGGTTACTACCACTGGGTCGTCGGCGGCGCCTTCTCCTCCTT
CCCGGAAATTTCAAATGCTGTACACGTGCAACATCTGTGAAGGACGGAAC
CTCATTCAAGTCGACCGCGTCGCTTTCACCGAAGGCATTGTGGTTGCTCG
CTGCAAACATTGTGATGCCAAGCACCTTGTCGCCGATAACTTGAGTAAGC
TTGATTTCGGGGGCTTGGTCAAGAAGGGGAAGGAGGGGGAGTCCAATCCT
GCAGGAGGTAAAGTGACTCTTGATGACATCTTAGCGGCACGCGGTGAGGA
AGCGAAGTACTTAGACATAAAAAGTAATCCGGAATTAGCGGCCAAGAGAA
TGAATCGGGTGGGAGCCAGGAGTGACATGGGACGCCTGGGCGGGATGATT
TACATAGTGAGCATTGTTTATCAAATGGTTGGCTACCACAATCTAGACAA
GAGAGATAAAGAGGAATAA
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protein sequence of rna878

>rna878-protein ID=rna878-protein|Name=rna878|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVAR
AIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSF
LVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGA
FAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTA
SVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEP
APATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEE
SGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASD
TEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAG
LKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT
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mRNA from alignment at CM002456.1:627709..629120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna878 ID=rna878|Name=rna878|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp|location=Sequence derived from alignment at CM002456.1:627709..629120+ (Nannochloropsis gaditana)
ATGGCGCCAGCTTCTCCGTGTATGCTTAAGTGGCTGGCCACGGGCCTCCC
TCATGCAACGACCGAGCACAAGGTGCActgggaggatgaggagcatTTCG
TGCTGCGCGCAGACGGAGACATAATTAAGGAGCCTAATACTGTCGCGCGT
GCGATAGCGAAAGCAGTAACTCCTGAGCTTACGGGTGTGCTACCAGTCGA
GCAGGGGCAGGTGGTGCAATGGCAGTCCTGGGCCTCGGAGACTGAAGACA
TCCTAGGTCGAGCTGTCGAACTCAATACTTTCCTGGAAGGCCGTTCCTTC
TTGGTGGGTGCGGCGCCTACATTAGCTGACATCCAAATGTACTGGGCCCT
TGCAAAAGTTGTggcgctttccttccccggaCCGCTGGGAGGGTCGGTGG
CTCTGATGCGCTGGTTTGACCAGATCCAGAACTGCCTGCGCGTAGGAGCT
TTTGCCATGTCGTACGACGTGACGCATTTGCCCCAACTTGTTCCAATGCA
TTCCATTTTCAAACCTGTGGCGATGCCTGTGTACGATAGAAGCAAAGGTC
AAGAAAGAGTGGGCGCAGCAGCGAGCGCGCATGAGGGCGGAGGCACCGCG
TCGGTAGAAagcaagggggaggcggcggcgaaagcgaagggagcgaggca
gaGAGACGGGGAGACTGGCGAGAAAGCGGCAAGCAGCGATGGGATAGGAA
ATCATCACGCACAAAGCCAGGGGAAAAagtcgaagaagaaggaggagcca
gcCCCTGCGACCGAGACCCTAGGAAAGGGCGAGACGGCGCCCACGGAGAA
CCCCAATGCCCTGGACATCCGGGTAGGAAGGTTGGTGAAAGTCTGGCCTC
ACCCGGAGGCCGAAAAGCTTTATTGCGAGGAGATCGATTGTGGCGAAGAA
AGCGGGCCCAGGCAGATCGCTTCGGGGCTCCGGCAATTTTACAGCGCTGC
CTCCGAGCTTGAGGGTCGAATGGTGCTAGTGCTCGCAAATTTGAAGCCAA
GGAAACTCGTGGGCTTTGCCTCAAATGGCATGGTCCTCTGCGCCTCGGAT
ACTGAGCATACACAAGTGAAATTGGTGGAACCGCCCGCCCATGCCAAGGT
GGGGGACcgcgtcgtcttccccggTTTCTCCACCGAGTCGATGCCCCTGA
CGCCAGCCCAGGTACAGAAAAAGAAAGTCTTTGAAGCCTTGGCCGCCGGT
TTGAAAACCGATTCCCAGGGCAGGTGCATCTTCAAAGACGAGACCCATCC
CTTCTGGGtcgccgggagggaggggtgcgagGCCGGCGCGGCGTGCACAG
CGCCGTTGCCGAATGCCCATGTTTCTTGAGTTATGCGTTCAAGAAATGTC
TTTTTCGCGGGAAAATGAGCAAGTGCATGATGGTTTGTGGTTCTGATTCC
CAAGCCACTTGA
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Coding sequence (CDS) from alignment at CM002456.1:627709..629120+

>rna878 ID=rna878|Name=rna878|organism=Nannochloropsis gaditana|type=CDS|length=2652bp|location=Sequence derived from alignment at CM002456.1:627709..629120+ (Nannochloropsis gaditana)
ATGGCGCCAGCTTCTCCGTGTATGCTTAAGTGGCTGGCCACGGGCCTCCC
TCATGCAACGACCGAGCACAAGGTGCActgggaggatgaggagcatTTCG
TGCTGCGCGCAGACGGAGACATAATTAAGGAGCCTAATACTGTCGCGCGT
GCGATAGCGAAAGCAGTAACTCCTGAGCTTACGGGTGTGCTACCAGTCGA
GCAGGGGCAGGTGGTGCAATGGCAGTCCTGGGCCTCGGAGACTGAAGACA
TCCTAGGTCGAGCTGTCGAACTCAATACTTTCCTGGAAGGCCGTTCCTTC
TTGGTGGGTGCGGCGCCTACATTAGCTGACATCCAAATGTACTGGGCCCT
TGCAAAAGTTGTggcgctttccttccccggaCCGCTGGGAGGGTCGGTGG
CTCTGATGCGCTGGTTTGACCAGATCCAGAACTGCCTGCGCGTAGGAGCT
TTTGCCATGTCGTACGACGTGACGCATTTGCCCCAACTTGTTCCAATGCA
TTCCATTTTCAAACCTGTGGCGATGCCTGTGTACGATAGAAGCAAAGGTC
AAGAAAGAGTGGGCGCAGCAGCGAGCGCGCATGAGGGCGGAGGCACCGCG
TCGGTAGAAagcaagggggaggcggcggcgaaagcgaagggagcgaggca
gaGAGACGGGGAGACTGGCGAGAAAGCGGCAAGCAGCGATGGGATAGGAA
ATCATCACGCACAAAGCCAGGGGAAAAagtcgaagaagaaggaggagcca
gcCCCTGCGACCGAGACCCTAGGAAAGGGCGAGACGGCGCCCACGGAGAA
CCCCAATGCCCTGGACATCCGGGTAGGAAGGTTGGTGAAAGTCTGGCCTC
ACCCGGAGGCCGAAAAGCTTTATTGCGAGGAGATCGATTGTGGCGAAGAA
AGCGGGCCCAGGCAGATCGCTTCGGGGCTCCGGCAATTTTACAGCGCTGC
CTCCGAGCTTGAGGGTCGAATGGTGCTAGTGCTCGCAAATTTGAAGCCAA
GGAAACTCGTGGGCTTTGCCTCAAATGGCATGGTCCTCTGCGCCTCGGAT
ACTGAGCATACACAAGTGAAATTGGTGGAACCGCCCGCCCATGCCAAGGT
GGGGGACcgcgtcgtcttccccggTTTCTCCACCGAGTCGATGCCCCTGA
CGCCAGCCCAGGTACAGAAAAAGAAAGTCTTTGAAGCCTTGGCCGCCGGT
TTGAAAACCGATTCCCAGGGCAGGTGCATCTTCAAAGACGAGACCCATCC
CTTCTGGAAATGTCTTTTTCGCGGGAAAATGAGCAAGTGCATGATGGTTT
GTGGTTCTGATTCCCAAGCCACTTGAATGGCGCCAGCTTCTCCGTGTATG
CTTAAGTGGCTGGCCACGGGCCTCCCTCATGCAACGACCGAGCACAAGGT
GCActgggaggatgaggagcatTTCGTGCTGCGCGCAGACGGAGACATAA
TTAAGGAGCCTAATACTGTCGCGCGTGCGATAGCGAAAGCAGTAACTCCT
GAGCTTACGGGTGTGCTACCAGTCGAGCAGGGGCAGGTGGTGCAATGGCA
GTCCTGGGCCTCGGAGACTGAAGACATCCTAGGTCGAGCTGTCGAACTCA
ATACTTTCCTGGAAGGCCGTTCCTTCTTGGTGGGTGCGGCGCCTACATTA
GCTGACATCCAAATGTACTGGGCCCTTGCAAAAGTTGTggcgctttcctt
ccccggaCCGCTGGGAGGGTCGGTGGCTCTGATGCGCTGGTTTGACCAGA
TCCAGAACTGCCTGCGCGTAGGAGCTTTTGCCATGTCGTACGACGTGACG
CATTTGCCCCAACTTGTTCCAATGCATTCCATTTTCAAACCTGTGGCGAT
GCCTGTGTACGATAGAAGCAAAGGTCAAGAAAGAGTGGGCGCAGCAGCGA
GCGCGCATGAGGGCGGAGGCACCGCGTCGGTAGAAagcaagggggaggcg
gcggcgaaagcgaagggagcgaggcagaGAGACGGGGAGACTGGCGAGAA
AGCGGCAAGCAGCGATGGGATAGGAAATCATCACGCACAAAGCCAGGGGA
AAAagtcgaagaagaaggaggagccagcCCCTGCGACCGAGACCCTAGGA
AAGGGCGAGACGGCGCCCACGGAGAACCCCAATGCCCTGGACATCCGGGT
AGGAAGGTTGGTGAAAGTCTGGCCTCACCCGGAGGCCGAAAAGCTTTATT
GCGAGGAGATCGATTGTGGCGAAGAAAGCGGGCCCAGGCAGATCGCTTCG
GGGCTCCGGCAATTTTACAGCGCTGCCTCCGAGCTTGAGGGTCGAATGGT
GCTAGTGCTCGCAAATTTGAAGCCAAGGAAACTCGTGGGCTTTGCCTCAA
ATGGCATGGTCCTCTGCGCCTCGGATACTGAGCATACACAAGTGAAATTG
GTGGAACCGCCCGCCCATGCCAAGGTGGGGGACcgcgtcgtcttccccgg
TTTCTCCACCGAGTCGATGCCCCTGACGCCAGCCCAGGTACAGAAAAAGA
AAGTCTTTGAAGCCTTGGCCGCCGGTTTGAAAACCGATTCCCAGGGCAGG
TGCATCTTCAAAGACGAGACCCATCCCTTCTGGAAATGTCTTTTTCGCGG
GAAAATGAGCAAGTGCATGATGGTTTGTGGTTCTGATTCCCAAGCCACTT
GA
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Synonyms
Publications