EWM29784.1, cds878 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|585112365|gb|EWM29784.1| (methionyl-trna [Nannochloropsis gaditana]) HSP 1 Score: 911.368 bits (2354), Expect = 0.000e+0 Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query: 1 MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT 441
MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT
Sbjct: 1 MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT 441
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|669141628|ref|XP_008606376.1| (hypothetical protein SDRG_02558 [Saprolegnia diclina VS20] >gi|530741660|gb|EQC39902.1| hypothetical protein SDRG_02558 [Saprolegnia diclina VS20]) HSP 1 Score: 200.29 bits (508), Expect = 3.037e-56 Identity = 141/396 (35.61%), Postives = 201/396 (50.76%), Query Frame = 0
Query: 35 LRADGDIIKEPNTVARAIAKAVTPEL--TGVLPVEQGQVVQWQSWAS-----ETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQE--RVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHT---QVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPF 418
L+ I+ E NT+ R A+A EL +G P+EQ ++ +W S AS E+ + G+ L+ L R + VG PTLAD +++ + K S G + V L RWF+Q+Q+ + + F MP+ D + Q V +A A V + A+KAK + DG+ ++ ++ +P + LDIRVG++VKVW H A+KLYCEEID GE++ PRQIASGL + YS ++EGRM LV+ NLK R LVGF S+GMVLCA T+ +V VEPPA AK G+R+V+ G + E PL+PAQV+K+KV GLK+D+ G ++KD H F
Sbjct: 35 LKLGNVILNETNTIVRYFARAADRELELSGTTPLEQAEISEWMSVASNQRANESLNNKGQWSLLDAHLASRVYFVGNRPTLADATLFYVIYKAFVKSH-GAVSKHVNLRRWFNQLQHTVGIRGFE---------------------TMPIIDVAVHQHLLMVHTTTTAPAADKKAPVTDEAAPASKAKPDAKTDGKAKKEDKPKKE-----KKAAAPAPVVDAQP----------------DITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDA-PRQIASGLVKHYS-LEQMEGRMCLVMCNLKARALVGFKSHGMVLCAVKTDADGTEKVAFVEPPAGAKPGERIVYEGLTGE--PLSPAQVEKQKVLVTAGEGLKSDATGIAMWKD--HKF 381
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|1072233741|gb|OEU18471.1| (nucleic acid-binding protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 170.629 bits (431), Expect = 4.439e-48 Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 0
Query: 269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
+ALDIRVG++VKVWPHPE+ KL+CEEID GE+ PRQIASGLR FY S+LEGR V+VL NLK RKLVGFAS+GMVLCAS+ +HT V+ +EPP A++G RV F G+ TE P ++ KKK+FE ++ LKTD+ G
Sbjct: 2 SALDIRVGKIVKVWPHPESVKLFCEEIDVGEDV-PRQIASGLRPFYET-SDLEGRRVVVLCNLKARKLVGFASHGMVLCASNADHTAVECMEPPEDAEIGQRVTFEGY-TEGEPEPENKIGKKKIFEKVSPDLKTDANG 137
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|1173955595|gb|OQS02540.1| (hypothetical protein THRCLA_05090 [Thraustotheca clavata]) HSP 1 Score: 184.496 bits (467), Expect = 7.226e-48 Identity = 138/380 (36.32%), Postives = 199/380 (52.37%), Query Frame = 0
Query: 35 LRADGDIIKEPNTVARAIAKAVTPEL--TGVLPVEQGQVVQWQSWASETE-----DILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVA----LMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHT---QVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAG 400
L+ ++ E NT+ R A+A EL TG +EQ Q+ +W S AS + G+ L+ L R + V PTLAD ++W + + S G V+ L RWF+Q+Q+ + + F S ++ LP V H + A P ++ G A AH+ A + +A KA ++ E+ KAA + + +K+KK ++P + + + LDIRVG+++K W H A+KLYCEEID GE++ PRQIASGL + YS E++ RM LV+ NLKPR LVGF S+GMVLCA T +V VEPPA A G+RV + G + E PL+PAQV+K+KV +AAG
Sbjct: 35 LKLGNVVMNETNTIVRYFARAADRELELTGATALEQAQIAEWMSVASNVRLNPALNNKGQWELLDAHLASRVYFVANRPTLADATLFWIIHQAFTKS-----GKEVSKHAHLRRWFNQLQHTVGIRGFE-STELIDLP--VHSHVLMVHAAAPASEKKHGHGHDKAHDKAHD---KAQDKVHNKAHDKAHADKKAGTESPNKAAK---VSKDDKPKKDEKAKKDDKPKKEKKAAAPAAASAQPDITKLDIRVGKIIKAWKHETADKLYCEEIDVGEDA-PRQIASGLVKHYS-LEEMQNRMCLVMCNLKPRSLVGFKSHGMVLCAVKTLEDGTEKVAFVEPPADATPGERVFYEGLTGE--PLSPAQVEKQKVL--IAAG 394
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|676382949|ref|XP_009034753.1| (hypothetical protein AURANDRAFT_5349, partial [Aureococcus anophagefferens] >gi|323454606|gb|EGB10476.1| hypothetical protein AURANDRAFT_5349, partial [Aureococcus anophagefferens]) HSP 1 Score: 166.392 bits (420), Expect = 4.289e-46 Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = 0
Query: 270 ALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
ALDIRVG +VK W HPEAEKLYCEEID GEE+GPR IASGLR FY++A ++ GR VL+ ANLK R + GF S GMVLCAS+ +HT VKL+E P AK GDRV F G P P+ VQKKK+ E + LKTD G
Sbjct: 4 ALDIRVGTVVKCWEHPEAEKLYCEEIDIGEEAGPRTIASGLRPFYASADDIRGRKVLIFANLKARTMQGFKSCGMVLCASNADHTVVKLLEVPPGAKNGDRVAF-GDLPVVPPAAPSAVQKKKLLEKVIGFLKTDGDG 140
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|855301261|ref|XP_012894060.1| (uncharacterized protein [Blastocystis hominis] >gi|300120458|emb|CBK20012.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 170.244 bits (430), Expect = 5.113e-45 Identity = 84/143 (58.74%), Postives = 104/143 (72.73%), Query Frame = 0
Query: 271 LDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKD 413
LDIRVGR+++ W HPE+EKLYCEE+D GE PRQI SG+R F++ E++G V VL NLKPRKL GF SNGM+LCAS +H L++PP AK+G+RV F GF E P TPAQVQKKK EA+ LKT+++G C FKD
Sbjct: 218 LDIRVGRIIRAWNHPESEKLYCEEVDVGEAE-PRQIGSGIRAFHTF-EEMQGHRVCVLCNLKPRKLGGFPSNGMLLCASTGDHEHGALIDPPEGAKIGERVTFAGFEGE--PATPAQVQKKKYLEAVLPFLKTNAEGVCCFKD 356
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|224007251|ref|XP_002292585.1| (probable methionyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335] >gi|220971447|gb|EED89781.1| probable methionyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 163.31 bits (412), Expect = 9.522e-45 Identity = 84/144 (58.33%), Postives = 104/144 (72.22%), Query Frame = 0
Query: 269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFK 412
+ALDIRVG++++ W H AEKLYCEEID GE+S PR+IASGLR FY E++ RMVLVL NLK R LVGF S+GMVLCAS+ +HT V+ PP AK+GDRV+F G + E P +V KKK+FE LA LKTD G ++K
Sbjct: 36 SALDIRVGKIIRAWEHESAEKLYCEEIDVGEDS-PRKIASGLRPFYKL-DEMQDRMVLVLCNLKARNLVGFPSHGMVLCASNADHTAVEFAVPPPTAKIGDRVMFDGITGE--PEAENKVAKKKMFEVLAPDLKTDEGGVVVWK 175
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|294896372|ref|XP_002775524.1| (methionyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] >gi|239881747|gb|EER07340.1| methionyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]) HSP 1 Score: 170.629 bits (431), Expect = 1.182e-44 Identity = 124/352 (35.23%), Postives = 179/352 (50.85%), Query Frame = 0
Query: 62 GVLPVEQG-QVVQWQSWA-SETEDILGRAVE----LNTFLEGRSFLVGAAP-TLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQ-LVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQ--KKKVFEALAAGLKT 403
G L + +G + ++W W +E+E E LN LE R+FL+G + TLAD + A + + + L + RW+ I S + P ++ +H++ + A + H+ TA+ E K + E G+K A +K+K K++ A A + ET P E+ + L++ VG++ KVW HP+AEKL+CEEIDCGE SGPRQIASGLR FY AS+LEGR V++LANLKPR L GF S+GMV+CAS +H+QV+++ P AK G+R+ PGF E P V K F+A+ LKT
Sbjct: 97 GALLIPEGSEALKWVEWCLNESEGAFKLTKEGVEKLNKALEDRAFLLGGSNITLADFVVAHAAERWASKASQKELAQYCNITRWYHHIS----------SLPGSPYPDSVIDLHAVTR-----------------AYTNLHKADATAAAEG---KGGKGSPKKGEADEAGKKKAE-------------RKAKNKDKQAKAQK-----ETRPVEDVSRLNMIVGKINKVWEHPDAEKLWCEEIDCGEASGPRQIASGLRDFYKEASDLEGRKVVILANLKPRPLRGFVSHGMVMCASSGDHSQVEVLTVPEDAKPGERISIPGFDGE-----PDDVLHPKHNPFDAVKGDLKT 395
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|219129353|ref|XP_002184855.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403640|gb|EEC43591.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 160.999 bits (406), Expect = 4.097e-44 Identity = 83/142 (58.45%), Postives = 105/142 (73.94%), Query Frame = 0
Query: 269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGF---STESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
+ALDIRVGR++KVW HPEA+KLYCEEID GE+ PRQIASGLR + +++GR+VLVL NLK RKLVGFAS+GMVLCAS+ +H++V+LV PP A++G+RV P F S E P +V KKK+ E LA L T+ G
Sbjct: 2 SALDIRVGRVLKVWEHPEADKLYCEEIDVGEDE-PRQIASGLRP-HLQPEDIDGRLVLVLCNLKERKLVGFASHGMVLCASNADHSEVRLVNPPVDARIGERVSIPDFDFTSEEGAPFAENKVGKKKIVEQLAPYLVTNRYG 141
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|224013333|ref|XP_002295318.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969041|gb|EED87384.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 158.688 bits (400), Expect = 3.753e-43 Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0
Query: 271 LDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFS---TESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
LDIRVGR+ KVW H EA+KLYCEEID GEE PR IASGLR Y +A ++EGR+VLVL NLK RKL GF S+GMVLCAS +H+QVKLV P AK+G+RV PGF E P +V KKKVFE +A LK+ G
Sbjct: 1 LDIRVGRINKVWVHEEADKLYCEEIDVGEEE-PRLIASGLRP-YMSAEDMEGRLVLVLCNLKERKLAGFPSHGMVLCASSEDHSQVKLVSVPVEAKIGERVTVPGFDFEGEEGQPYAENKVGKKKVFEQIAPFLKSSEYG 138 The following BLAST results are available for this feature:
BLAST of EWM29784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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