EWM29784.1, cds878 (CDS) Nannochloropsis gaditana

Overview
NameEWM29784.1
Unique Namecds878
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:627709..628965 +
Alignment locationCM002456.1:629052..629120 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29784.1
Productmethionyl-trna
Orig transcript idgnl|cribi|Naga_100017g70.282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:627709..628965 +
CM002456.1supercontigCM002456.1:629052..629120 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000049tRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010987Glutathione-S-Trfase_C-like
IPR004046GST_C
IPR012340NA-bd_OB-fold
IPR002547tRNA-bd_dom
Homology
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|585112365|gb|EWM29784.1| (methionyl-trna [Nannochloropsis gaditana])

HSP 1 Score: 911.368 bits (2354), Expect = 0.000e+0
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query:    1 MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT 441
            MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT
Sbjct:    1 MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFWKCLFRGKMSKCMMVCGSDSQAT 441          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|669141628|ref|XP_008606376.1| (hypothetical protein SDRG_02558 [Saprolegnia diclina VS20] >gi|530741660|gb|EQC39902.1| hypothetical protein SDRG_02558 [Saprolegnia diclina VS20])

HSP 1 Score: 200.29 bits (508), Expect = 3.037e-56
Identity = 141/396 (35.61%), Postives = 201/396 (50.76%), Query Frame = 0
Query:   35 LRADGDIIKEPNTVARAIAKAVTPEL--TGVLPVEQGQVVQWQSWAS-----ETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQE--RVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHT---QVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPF 418
            L+    I+ E NT+ R  A+A   EL  +G  P+EQ ++ +W S AS     E+ +  G+   L+  L  R + VG  PTLAD  +++ + K    S  G +   V L RWF+Q+Q+ + +  F                       MP+ D +  Q    V    +A      A V  +   A+KAK   + DG+  ++            ++         +P                +   LDIRVG++VKVW H  A+KLYCEEID GE++ PRQIASGL + YS   ++EGRM LV+ NLK R LVGF S+GMVLCA  T+     +V  VEPPA AK G+R+V+ G + E  PL+PAQV+K+KV      GLK+D+ G  ++KD  H F
Sbjct:   35 LKLGNVILNETNTIVRYFARAADRELELSGTTPLEQAEISEWMSVASNQRANESLNNKGQWSLLDAHLASRVYFVGNRPTLADATLFYVIYKAFVKSH-GAVSKHVNLRRWFNQLQHTVGIRGFE---------------------TMPIIDVAVHQHLLMVHTTTTAPAADKKAPVTDEAAPASKAKPDAKTDGKAKKEDKPKKE-----KKAAAPAPVVDAQP----------------DITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDA-PRQIASGLVKHYS-LEQMEGRMCLVMCNLKARALVGFKSHGMVLCAVKTDADGTEKVAFVEPPAGAKPGERIVYEGLTGE--PLSPAQVEKQKVLVTAGEGLKSDATGIAMWKD--HKF 381          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|1072233741|gb|OEU18471.1| (nucleic acid-binding protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 170.629 bits (431), Expect = 4.439e-48
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 0
Query:  269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
            +ALDIRVG++VKVWPHPE+ KL+CEEID GE+  PRQIASGLR FY   S+LEGR V+VL NLK RKLVGFAS+GMVLCAS+ +HT V+ +EPP  A++G RV F G+ TE  P    ++ KKK+FE ++  LKTD+ G
Sbjct:    2 SALDIRVGKIVKVWPHPESVKLFCEEIDVGEDV-PRQIASGLRPFYET-SDLEGRRVVVLCNLKARKLVGFASHGMVLCASNADHTAVECMEPPEDAEIGQRVTFEGY-TEGEPEPENKIGKKKIFEKVSPDLKTDANG 137          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|1173955595|gb|OQS02540.1| (hypothetical protein THRCLA_05090 [Thraustotheca clavata])

HSP 1 Score: 184.496 bits (467), Expect = 7.226e-48
Identity = 138/380 (36.32%), Postives = 199/380 (52.37%), Query Frame = 0
Query:   35 LRADGDIIKEPNTVARAIAKAVTPEL--TGVLPVEQGQVVQWQSWASETE-----DILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVA----LMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHT---QVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAG 400
            L+    ++ E NT+ R  A+A   EL  TG   +EQ Q+ +W S AS        +  G+   L+  L  R + V   PTLAD  ++W + +    S     G  V+    L RWF+Q+Q+ + +  F  S ++  LP  V  H +    A P  ++  G     A   AH+    A  +   +A  KA   ++   E+  KAA    +       + +K+KK ++P    +       +   +   LDIRVG+++K W H  A+KLYCEEID GE++ PRQIASGL + YS   E++ RM LV+ NLKPR LVGF S+GMVLCA  T      +V  VEPPA A  G+RV + G + E  PL+PAQV+K+KV   +AAG
Sbjct:   35 LKLGNVVMNETNTIVRYFARAADRELELTGATALEQAQIAEWMSVASNVRLNPALNNKGQWELLDAHLASRVYFVANRPTLADATLFWIIHQAFTKS-----GKEVSKHAHLRRWFNQLQHTVGIRGFE-STELIDLP--VHSHVLMVHAAAPASEKKHGHGHDKAHDKAHD---KAQDKVHNKAHDKAHADKKAGTESPNKAAK---VSKDDKPKKDEKAKKDDKPKKEKKAAAPAAASAQPDITKLDIRVGKIIKAWKHETADKLYCEEIDVGEDA-PRQIASGLVKHYS-LEEMQNRMCLVMCNLKPRSLVGFKSHGMVLCAVKTLEDGTEKVAFVEPPADATPGERVFYEGLTGE--PLSPAQVEKQKVL--IAAG 394          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|676382949|ref|XP_009034753.1| (hypothetical protein AURANDRAFT_5349, partial [Aureococcus anophagefferens] >gi|323454606|gb|EGB10476.1| hypothetical protein AURANDRAFT_5349, partial [Aureococcus anophagefferens])

HSP 1 Score: 166.392 bits (420), Expect = 4.289e-46
Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = 0
Query:  270 ALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
            ALDIRVG +VK W HPEAEKLYCEEID GEE+GPR IASGLR FY++A ++ GR VL+ ANLK R + GF S GMVLCAS+ +HT VKL+E P  AK GDRV F G      P  P+ VQKKK+ E +   LKTD  G
Sbjct:    4 ALDIRVGTVVKCWEHPEAEKLYCEEIDIGEEAGPRTIASGLRPFYASADDIRGRKVLIFANLKARTMQGFKSCGMVLCASNADHTVVKLLEVPPGAKNGDRVAF-GDLPVVPPAAPSAVQKKKLLEKVIGFLKTDGDG 140          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|855301261|ref|XP_012894060.1| (uncharacterized protein [Blastocystis hominis] >gi|300120458|emb|CBK20012.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 170.244 bits (430), Expect = 5.113e-45
Identity = 84/143 (58.74%), Postives = 104/143 (72.73%), Query Frame = 0
Query:  271 LDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKD 413
            LDIRVGR+++ W HPE+EKLYCEE+D GE   PRQI SG+R F++   E++G  V VL NLKPRKL GF SNGM+LCAS  +H    L++PP  AK+G+RV F GF  E  P TPAQVQKKK  EA+   LKT+++G C FKD
Sbjct:  218 LDIRVGRIIRAWNHPESEKLYCEEVDVGEAE-PRQIGSGIRAFHTF-EEMQGHRVCVLCNLKPRKLGGFPSNGMLLCASTGDHEHGALIDPPEGAKIGERVTFAGFEGE--PATPAQVQKKKYLEAVLPFLKTNAEGVCCFKD 356          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|224007251|ref|XP_002292585.1| (probable methionyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335] >gi|220971447|gb|EED89781.1| probable methionyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 163.31 bits (412), Expect = 9.522e-45
Identity = 84/144 (58.33%), Postives = 104/144 (72.22%), Query Frame = 0
Query:  269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFK 412
            +ALDIRVG++++ W H  AEKLYCEEID GE+S PR+IASGLR FY    E++ RMVLVL NLK R LVGF S+GMVLCAS+ +HT V+   PP  AK+GDRV+F G + E  P    +V KKK+FE LA  LKTD  G  ++K
Sbjct:   36 SALDIRVGKIIRAWEHESAEKLYCEEIDVGEDS-PRKIASGLRPFYKL-DEMQDRMVLVLCNLKARNLVGFPSHGMVLCASNADHTAVEFAVPPPTAKIGDRVMFDGITGE--PEAENKVAKKKMFEVLAPDLKTDEGGVVVWK 175          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|294896372|ref|XP_002775524.1| (methionyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] >gi|239881747|gb|EER07340.1| methionyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 170.629 bits (431), Expect = 1.182e-44
Identity = 124/352 (35.23%), Postives = 179/352 (50.85%), Query Frame = 0
Query:   62 GVLPVEQG-QVVQWQSWA-SETEDILGRAVE----LNTFLEGRSFLVGAAP-TLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQ-LVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKKEEPAPATETLGKGETAPTENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQ--KKKVFEALAAGLKT 403
            G L + +G + ++W  W  +E+E       E    LN  LE R+FL+G +  TLAD  +  A  +  + +    L     + RW+  I           S   +  P  ++ +H++ +                 A  + H+   TA+ E       K    +    E G+K A              +K+K K++ A A +     ET P E+ + L++ VG++ KVW HP+AEKL+CEEIDCGE SGPRQIASGLR FY  AS+LEGR V++LANLKPR L GF S+GMV+CAS  +H+QV+++  P  AK G+R+  PGF  E     P  V   K   F+A+   LKT
Sbjct:   97 GALLIPEGSEALKWVEWCLNESEGAFKLTKEGVEKLNKALEDRAFLLGGSNITLADFVVAHAAERWASKASQKELAQYCNITRWYHHIS----------SLPGSPYPDSVIDLHAVTR-----------------AYTNLHKADATAAAEG---KGGKGSPKKGEADEAGKKKAE-------------RKAKNKDKQAKAQK-----ETRPVEDVSRLNMIVGKINKVWEHPDAEKLWCEEIDCGEASGPRQIASGLRDFYKEASDLEGRKVVILANLKPRPLRGFVSHGMVMCASSGDHSQVEVLTVPEDAKPGERISIPGFDGE-----PDDVLHPKHNPFDAVKGDLKT 395          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|219129353|ref|XP_002184855.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403640|gb|EEC43591.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 160.999 bits (406), Expect = 4.097e-44
Identity = 83/142 (58.45%), Postives = 105/142 (73.94%), Query Frame = 0
Query:  269 NALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGF---STESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
            +ALDIRVGR++KVW HPEA+KLYCEEID GE+  PRQIASGLR  +    +++GR+VLVL NLK RKLVGFAS+GMVLCAS+ +H++V+LV PP  A++G+RV  P F   S E  P    +V KKK+ E LA  L T+  G
Sbjct:    2 SALDIRVGRVLKVWEHPEADKLYCEEIDVGEDE-PRQIASGLRP-HLQPEDIDGRLVLVLCNLKERKLVGFASHGMVLCASNADHSEVRLVNPPVDARIGERVSIPDFDFTSEEGAPFAENKVGKKKIVEQLAPYLVTNRYG 141          
BLAST of EWM29784.1 vs. NCBI_GenBank
Match: gi|224013333|ref|XP_002295318.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969041|gb|EED87384.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 158.688 bits (400), Expect = 3.753e-43
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0
Query:  271 LDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFS---TESMPLTPAQVQKKKVFEALAAGLKTDSQG 407
            LDIRVGR+ KVW H EA+KLYCEEID GEE  PR IASGLR  Y +A ++EGR+VLVL NLK RKL GF S+GMVLCAS  +H+QVKLV  P  AK+G+RV  PGF     E  P    +V KKKVFE +A  LK+   G
Sbjct:    1 LDIRVGRINKVWVHEEADKLYCEEIDVGEEE-PRLIASGLRP-YMSAEDMEGRLVLVLCNLKERKLAGFPSHGMVLCASSEDHSQVKLVSVPVEAKIGERVTVPGFDFEGEEGQPYAENKVGKKKVFEQIAPFLKSSEYG 138          
The following BLAST results are available for this feature:
BLAST of EWM29784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112365|gb|EWM29784.1|0.000e+0100.00methionyl-trna [Nannochloropsis gaditana][more]
gi|669141628|ref|XP_008606376.1|3.037e-5635.61hypothetical protein SDRG_02558 [Saprolegnia dicli... [more]
gi|1072233741|gb|OEU18471.1|4.439e-4861.87nucleic acid-binding protein, partial [Fragilariop... [more]
gi|1173955595|gb|OQS02540.1|7.226e-4836.32hypothetical protein THRCLA_05090 [Thraustotheca c... [more]
gi|676382949|ref|XP_009034753.1|4.289e-4661.59hypothetical protein AURANDRAFT_5349, partial [Aur... [more]
gi|855301261|ref|XP_012894060.1|5.113e-4558.74uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|224007251|ref|XP_002292585.1|9.522e-4558.33probable methionyl-trna synthetase, partial [Thala... [more]
gi|294896372|ref|XP_002775524.1|1.182e-4435.23methionyl-tRNA synthetase, putative [Perkinsus mar... [more]
gi|219129353|ref|XP_002184855.1|4.097e-4458.45predicted protein, partial [Phaeodactylum tricornu... [more]
gi|224013333|ref|XP_002295318.1|3.753e-4360.71predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna878rna878Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications