rna8775, rna8775 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8775
Unique Name	rna8775
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1041
Alignment location	KK037250.1:135113..137967 -

Link to JBrowse

Properties


Property Name	Value
Product	cre-cul-1 protein
Orig transcript id	gnl\|cribi\|Naga_100220g1.7203.mrna
Orig protein id	gnl\|cribi\|Naga_100220g1.7203
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:135113..137967 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100220g1	gene8507	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21928.1	cds8745	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8775	rna8775-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:135113..137967-
coding sequence from alignment at KK037250.1:135113..137967-

mRNA sequence

>rna8775 ID=rna8775|Name=rna8775|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp
ATGTGGAAAGGCAGCGCCTCGAAGAGACCAAAATGCCACTATCAAAAACG
ATTGTTTCGAATGCTTGTGGTCTTCCTTTTGAAAAGCATTTCATGCGCTT
TTCAGGGCATGCCTTCCTTAGTTAATTCAGGTCGTGGAATTGACAGGAGG
GGCCCCCACACCCATGTGACCTCTTCAATACGCGGGCAGGCCGACACAAG
TAATGTCCTCGTGACATCGTATGCTGAAGATGCAGTTATCTGGGATGTAC
CAGTAGGTATTCAACGGGGAGAACCACCAAGCGACCTTAAACCCAACTAT
GTTACCTTCCTTGGCTTGGCAGAGGTCTTCCAAGACCAGGATGGAATCAA
ACTCGCAGATTTATTCGATACCGACGATGGTTTTAGGCATGCTATCCGTG
TGGCCATGCGGGAAGATCTTTTTATACCGGACCCGACACGTTCTGAGAAG
GTGAATCGCTTTCTCAAAGACCTTGGCTCCTCCTTGCACGTCTGTTGGGA
GAAGTCTCCAACAGGATACGCGAATTTGTCTCGGGTTTTCAAGCAATACG
GGATCGGAAATTTAGACGGAGCGACATTTATCAAGAAACTAGGAGGCATG
GCCGGGGGCGGTCCTCAAATCAAAGACTCAGACGGTTTCCTGCTCCGTCA
GAAGCGTTTTGGGAGTCTCATCGATATTGTCACAGCAGGAAGCCGCCTCA
AGCCTGCCCATTCGTGGCACCAGGATTGCAATTTACCGCAGATGACTGTC
ATGCTAGGGTTTCCCAAAACTAGCGGCTATCTAGGCACGGGTGTCTTCTC
TCATGCCATCAAATTGAGTCACCCATTGAAAGACCAGGTACCCGGTGGAG
GGCAAGTAGTCCAATACGATGAGTATGAGGGTGTCGGTAAAGATCCAAAA
TTACCAAATATTTTGCCTGAATCCGTGATATTGCGGCCTCGGTACGGGAA
AGGGCGAGAGATAATGATTTACGACGACAGCTGGCATATACATTCCGCTC
CTGACCACATCTATCGGACGTCTGTATGGAGATTCATGTAA

protein sequence of rna8775

>rna8775-protein ID=rna8775-protein|Name=rna8775|organism=Nannochloropsis gaditana|type=polypeptide|length=846bp
EHLAVLRRVIGSFVALGTTLEPSHPVGFYKEQLEDHVLREVYLHYVYKAG
LFAAEVSAGHADEAAVAKYIRTVEGCVAAEKAIWEPVYPSTSRGAVRVVR
KSMLESQPHHQILMAFANAALAFHAERLADLELLYRLLDNEDVEPTKGIE
ALRNIFFGFVKEVGAREVKRANEEARHRQSSPLRPDMSHMLARSSLPPDY
VCSDTIQTMLDLYSHYLTLVRVTFKDDSRFAKAFKTACEHFINALPNMSE
SLAIHAHYFLDKNCPESRMENVDVALDSIVLLFNFIQDKDLFHRSYARLL
AARIISFSSVSDEAERRMMKHLMQVCGFQYAMTFQRMFMDKTLSFELSCE
FAEWEREHRAQQQRLLLMRQKQLAEGRGVCLEGGDEVGGADGVTGLEEGG
RGGAGGAGGAIGEVGRGGHGRRKSDSAIEFVETESGHVTPRSVSPKLSHG
MRFIGLHDSSPLQVLLSKRVFADKVKKYKERGLVSTPASSALAPKGDLPH
PSSASPQAAAQGGGGTIGTYSVMSGRTPSYHRGNTFFFGDDDMNSPGTAG
AGGGGGGSGGAGFSWSHSVLDAPNAKKGIRQTSGAGGEAEVEFFVFILTG
GSWPYPSTGQLVQLPAPLMRCVESFSTFYDAKYKRRRLTWLHELGHGEVL
FRCPASDRSYTLLVSTSQICILLLFNSRSAWSVEELQRALDLDLGELVLC
LYPLLRSQVLTCRPEVAVASKLTKHHTVVVNEGLSRRGCRLAVPRKCDEA
ELPSALDSPRSMDPARISPTLLNERKSAIEARVVHLMKKAGSMRHDKLIE
AVLQHTRQMNFLPPVDFICEVIRADIDKDFLELAEDGPNPLYRYLA

mRNA from alignment at KK037250.1:135113..137967-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8775 ID=rna8775|Name=rna8775|organism=Nannochloropsis gaditana|type=mRNA|length=2855bp|location=Sequence derived from alignment at KK037250.1:135113..137967- (Nannochloropsis gaditana)
GAGCACCTGGCCGTGTTGCGCCGCGTGATCGGCTCCTTCGTGGCGCTGGG
CACGACCCTGGAGCCCTCGCACCCTGTGGGCTTCTACAAAGAGCAACTTG
AGGACCATGTCTTGAGGGAAGTCTACCTGCACTACGTGTACAAGGCCGGG
CTTTTTGCGGCGGAGGTGTCAGCGGGGCATGCAGACGAAGCTGCTGTGGC
AAAGTACATCCGAACGGTCGAGGGCTGCGTGGCCGCGGAAAAGGCAATTT
GGGAGCCCGTCTACCCCTCTACCTCGCGAGGGGCTGTGCGTGTGGTCCGA
AAGTCGATGCTGGAGAGCCAGCCGCACCATCAAATCCTTATGGCCTTCGC
CAACGCCGCACTCGCCTTCCATGCAGAGCGGCTCGCAGACTTGGAACTGC
TGTATCGGCTCCTGGACAACGAGGACGTGGAGCCTACGAAAGGCATCGAG
GCACTCCGCAACATCTTCTTCGGTTTCGTCAAGGAGGTGGGGGCTCGGGA
GGTGAAGCGCGCGAACGAGGAGGCCCGTCATCGGCAATCATCGCCGCTGA
GGCCTGACATGTCGCACATGCTCGCTCGCTCCTCACTCCCCCCCGACTAC
GTGTGCTCGGACACGATCCAGACGATGCTGGATCTCTACTCCCATTACCT
GACCCTGGTCCGCGTCACTTTCAAGGACGACTCTCGCTTTGCCAAGGCCT
TCAAGACGGCCTGTGAGCACTTCATCAACGCGCTCCCGAATATGTCTGAG
TCCCTGGCCATACACGCCCACTACTTCCTCGACAAGAACTGTCCTGAGTC
CCGCATGGAAAATGTGGACGTGGCGCTTGACAGCATCGTCCTCCTCTTCA
ACTTCATTCAGGACAAAGACCTTTTCCACCGCTCCTACGCCCGTCTTCTC
GCGGCTCGGATCATCTCCTTCTCCTCGGTCTCGGACGAAGCTGAGCGACG
GATGATGAAACATCTCATGCAAGTTTGCGGCTTCCAGTACGCCATGACGT
TCCAGCGCATGTTTATGGATAAAACTCTTTCCTTTGAGCTCTCTTGCGAG
TTTGCAGAGTGGGAACGCGAGCACCGTGCCCAGCAGCAGCGGCTTCTGCT
CATGCGCCAAAAGCAGCTAGCAGAGGGACGGGGAGTATGTCTGGAAGGGG
GAGACGAGGTGGGAGGGGCAGATGGGGTGACGGGATTGGAAGAAGGAGGA
CGTGGCGGTGCCGGGGGAGCCGGAGGAGCGATTGGCGAGGTGGGGCGAGG
GGGGCACGGCCGCCGGAAGTCGGACTCGGCGATCGAGTTCGTCGAAACAG
AGTCCGGCCACGTTACGCCCAGGTCGGTCAGCCCCAAGCTCAGCCACGGC
ATGCGGTTCATCGGCCTTCATGACTCGAGCCCCTTGCAGGTGCTCCTGTC
CAAGCGGGTCTTCGCGGACAAGGTGAAGAAGTACAAGGAGAGGGGCCTGG
TGTCCACTCCTGCCAGCTCTGCCCTCGCCCCAAAGGGCGACTTGCCTCAT
CCTTCATCCGCGTCGCCTCAAGCGGCAGCACAAGGAGGCGGTGGGACTAT
TGGTACCTATTCCGTGATGTCGGGTCGTACTCCCTCATATCATCGCGGCA
ACACATTTTTCTTCGGTGACGACGACATGAATTCACCGGGAACTGCCGGC
GCCGGAGGGGGAGGCGGCGGAAGCGGCGGTGCTGGCTTTTCGTGGTCGCA
TTCGGTGCTTGACGCACCGAATGCTAAAAAAGGAATACGTCAAACATCGG
GCGCAGGAGGAGAGGCGGAGGTGGAGTTCTTCGTTTTTATCCTGACGGGC
GGATCTTGGCCGTACCCCTCGACAGGACAACTCGTACAGCTGCCAGCCCC
CTTGATGCGTTGCGTAGAGTCCTTCTCCACCTTCTACGATGCCAAGTATA
AGCGGCGACGACTGACTTGGCTGCACGAGCTCGGCCACGGGGAGGTGCTT
TTCCGGTGCCCCGCCAGTGACAGGTCCTACACCTTGCTGGTGTCCACTTC
GCAGATCTGTATCCTGCTCCTTTTCAACTCCCGGTCAGCTTGGAGCGTGG
AAGAACTCCAGCGGGCTCTCGACCTAGACTTGGGCGAGCTTGTTTTGTGT
CTTTACCCCTTGCTGCGGTCGCAAGTCCTTACGTGTAGACCTGAAGTAGC
GGTCGCCTCAAAACTGACCAAGCACCACACCGTTGTGGTAAACGAAGGCC
TGTCTCGCCGTGGCTGCAGACTTGCTGTGCCGCGCAAGTGCGACGAGGCG
GAGCTGCCGTCTGCATTGGATTCTCCTCGCTCCATGGATCCAGCTCGCAT
CTCGCCCACGTTGCTGAATGAGCGTAAGAGCGCAATAGAGGCCCGAGTCG
TGCACTTGATGAAAAAGGCAGGTAGCATGCGGCACGATAAATTGATTGAA
GCAGTGTTGCAGCATACACGCCAAATGAATTTTTTGCCCCCTGTGGATTT
TATATGCGAAGTTATTCGCGCCGACATAGATAAGGATTTCTTGGAGCTTG
CGGAGGACGGGCCCAACCCGCTTTATCGTTATCTAGCCTAGAGCACCACA
TTGAAGTAGAAAATATCTTGGCAAATGTACATCGACAATGAAGTGGCGGT
GGGGTGAAAGATGATGAGCACTCAAATTGCAATTAATTGCAGTAACATAG
AGTCTCTGAGTAATGCTTGTTACAAAGAATCGGATCGCGGGGTAGAACAT
TCTAGCTTCGAAATGTACACAAGATTGAAAGATCTTTGACGGGACAAACA
AAAAGTAGAAAAATCGAGAATTTTCACAAATAGTCGTCTATGTTTGAAAT
GCTCAATCCCCAACATCTCAGTACATCGCTCATCAGAGCATTAGTTCCAA
TTATC

Coding sequence (CDS) from alignment at KK037250.1:135113..137967-

>rna8775 ID=rna8775|Name=rna8775|organism=Nannochloropsis gaditana|type=CDS|length=2541bp|location=Sequence derived from alignment at KK037250.1:135113..137967- (Nannochloropsis gaditana)
GAGCACCTGGCCGTGTTGCGCCGCGTGATCGGCTCCTTCGTGGCGCTGGG
CACGACCCTGGAGCCCTCGCACCCTGTGGGCTTCTACAAAGAGCAACTTG
AGGACCATGTCTTGAGGGAAGTCTACCTGCACTACGTGTACAAGGCCGGG
CTTTTTGCGGCGGAGGTGTCAGCGGGGCATGCAGACGAAGCTGCTGTGGC
AAAGTACATCCGAACGGTCGAGGGCTGCGTGGCCGCGGAAAAGGCAATTT
GGGAGCCCGTCTACCCCTCTACCTCGCGAGGGGCTGTGCGTGTGGTCCGA
AAGTCGATGCTGGAGAGCCAGCCGCACCATCAAATCCTTATGGCCTTCGC
CAACGCCGCACTCGCCTTCCATGCAGAGCGGCTCGCAGACTTGGAACTGC
TGTATCGGCTCCTGGACAACGAGGACGTGGAGCCTACGAAAGGCATCGAG
GCACTCCGCAACATCTTCTTCGGTTTCGTCAAGGAGGTGGGGGCTCGGGA
GGTGAAGCGCGCGAACGAGGAGGCCCGTCATCGGCAATCATCGCCGCTGA
GGCCTGACATGTCGCACATGCTCGCTCGCTCCTCACTCCCCCCCGACTAC
GTGTGCTCGGACACGATCCAGACGATGCTGGATCTCTACTCCCATTACCT
GACCCTGGTCCGCGTCACTTTCAAGGACGACTCTCGCTTTGCCAAGGCCT
TCAAGACGGCCTGTGAGCACTTCATCAACGCGCTCCCGAATATGTCTGAG
TCCCTGGCCATACACGCCCACTACTTCCTCGACAAGAACTGTCCTGAGTC
CCGCATGGAAAATGTGGACGTGGCGCTTGACAGCATCGTCCTCCTCTTCA
ACTTCATTCAGGACAAAGACCTTTTCCACCGCTCCTACGCCCGTCTTCTC
GCGGCTCGGATCATCTCCTTCTCCTCGGTCTCGGACGAAGCTGAGCGACG
GATGATGAAACATCTCATGCAAGTTTGCGGCTTCCAGTACGCCATGACGT
TCCAGCGCATGTTTATGGATAAAACTCTTTCCTTTGAGCTCTCTTGCGAG
TTTGCAGAGTGGGAACGCGAGCACCGTGCCCAGCAGCAGCGGCTTCTGCT
CATGCGCCAAAAGCAGCTAGCAGAGGGACGGGGAGTATGTCTGGAAGGGG
GAGACGAGGTGGGAGGGGCAGATGGGGTGACGGGATTGGAAGAAGGAGGA
CGTGGCGGTGCCGGGGGAGCCGGAGGAGCGATTGGCGAGGTGGGGCGAGG
GGGGCACGGCCGCCGGAAGTCGGACTCGGCGATCGAGTTCGTCGAAACAG
AGTCCGGCCACGTTACGCCCAGGTCGGTCAGCCCCAAGCTCAGCCACGGC
ATGCGGTTCATCGGCCTTCATGACTCGAGCCCCTTGCAGGTGCTCCTGTC
CAAGCGGGTCTTCGCGGACAAGGTGAAGAAGTACAAGGAGAGGGGCCTGG
TGTCCACTCCTGCCAGCTCTGCCCTCGCCCCAAAGGGCGACTTGCCTCAT
CCTTCATCCGCGTCGCCTCAAGCGGCAGCACAAGGAGGCGGTGGGACTAT
TGGTACCTATTCCGTGATGTCGGGTCGTACTCCCTCATATCATCGCGGCA
ACACATTTTTCTTCGGTGACGACGACATGAATTCACCGGGAACTGCCGGC
GCCGGAGGGGGAGGCGGCGGAAGCGGCGGTGCTGGCTTTTCGTGGTCGCA
TTCGGTGCTTGACGCACCGAATGCTAAAAAAGGAATACGTCAAACATCGG
GCGCAGGAGGAGAGGCGGAGGTGGAGTTCTTCGTTTTTATCCTGACGGGC
GGATCTTGGCCGTACCCCTCGACAGGACAACTCGTACAGCTGCCAGCCCC
CTTGATGCGTTGCGTAGAGTCCTTCTCCACCTTCTACGATGCCAAGTATA
AGCGGCGACGACTGACTTGGCTGCACGAGCTCGGCCACGGGGAGGTGCTT
TTCCGGTGCCCCGCCAGTGACAGGTCCTACACCTTGCTGGTGTCCACTTC
GCAGATCTGTATCCTGCTCCTTTTCAACTCCCGGTCAGCTTGGAGCGTGG
AAGAACTCCAGCGGGCTCTCGACCTAGACTTGGGCGAGCTTGTTTTGTGT
CTTTACCCCTTGCTGCGGTCGCAAGTCCTTACGTGTAGACCTGAAGTAGC
GGTCGCCTCAAAACTGACCAAGCACCACACCGTTGTGGTAAACGAAGGCC
TGTCTCGCCGTGGCTGCAGACTTGCTGTGCCGCGCAAGTGCGACGAGGCG
GAGCTGCCGTCTGCATTGGATTCTCCTCGCTCCATGGATCCAGCTCGCAT
CTCGCCCACGTTGCTGAATGAGCGTAAGAGCGCAATAGAGGCCCGAGTCG
TGCACTTGATGAAAAAGGCAGGTAGCATGCGGCACGATAAATTGATTGAA
GCAGTGTTGCAGCATACACGCCAAATGAATTTTTTGCCCCCTGTGGATTT
TATATGCGAAGTTATTCGCGCCGACATAGATAAGGATTTCTTGGAGCTTG
CGGAGGACGGGCCCAACCCGCTTTATCGTTATCTAGCCTAG

Synonyms

Publications