rna8774, rna8774 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8774
Unique Name	rna8774
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1662
Alignment location	KK037250.1:130472..131703 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100220g2.7209.mrna
Orig protein id	gnl\|cribi\|Naga_100220g2.7209
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:130472..131703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100220g2	gene8506	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8774	rna8774-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21934.1	cds8744	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:130472..131703+
coding sequence from alignment at KK037250.1:130472..131703+

mRNA sequence

>rna8774 ID=rna8774|Name=rna8774|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp
ATGGCTACGGACGCAGGAAGAGTAAGACCAACATCTGCATCGTCTTCTGT
CACAAACTTGAGTGATTCGCATGCGCCAATAACCGAGGAGATGGATGGTA
CATTCCTTCCTGCGACAGAAGTCGTGGAGGCGGAGGAGCAGGATGTTGTT
GGCGCTTGGGGTCGCCCTATATCTCGTTTTGGTTTTCATCGGCACGGGGT
CTATCGACGCAAGCCACGCCTGTTCCCAAGTAGCATGGTAGCAAACGCCC
AACGGGTCGAATCAATATTCCTAAGACACTATCGGGAGAACATCTTGGAC
AAAATTCAGGGTGAAAAGGTAGAACCGATGAAGCCCAAGCGCCCCGTCCG
ACGGACAGCCGCCGCGGAGGCGGGGGACCCCGCACATTGCTTCAATGGCG
ACCGGAATGGCACGTCCCCGGCTCCGCAAGCAGGACATGTCCTTGGCAGG
AGAGGGCCGGCGCTGAGTGATGTCGAACAGGCGCATCTTCCAGAAGGCCA
GACGGACGAGAGCGAGCACACGCAACAGAAAGCATCGGCGGATCTGAAGG
AATTGCGGAGAGCGACGCGCTCGACTGGAAGGGGGATCGAGGACTGGATC
AAAATTCCTGTCGCGGCTACAGTGCGCGTCCCATCAGGGGATTTAGAGAA
GCTGGATGGGATGGTCTACGTCAGCACCGACACGGGGGCTTTTTTCAGGC
AGCAAGGGGGAGTATATTTCGAGACCATGTGGAAGGGCAGCGTCCACAAG
TACTTCATTCCCGACTCGGAGCTTCCCATGGTCTCAGAGGACCACTTCCT
TTTCAAGGAGGAAAGGGCGCGCATCGAGGAGGACAGGCTCAAGAGGTTAA
GCCAGGCAAAGCACATGCTGGAGCTCGGGTGTACTAACGAGGAGGTCACC
TTTGACATCGAAAAGAAGGCGGCTGACAGAACCCTTGAGTCCCGAAAGGA
AGAGCTTCGAGAGCGTATGCTGGGACGCGCTGAAGACATATTGGAGGAGT
TGGAGGAAGAAGTCGCCATCACAAGTCTGCCCCTCATTCGGGAGAGTTCC
GCCCACCACAAGTCTCTGGCATGGTCGGGCAGCACTCCAGCTACCTCCCA
AAGTCCAGCCCGCGTCAGAGCACGCAGAAGACGCTCGGGCAGTGAATTCA
GCGATGCCGAGACCCTCGTTTTAGAAAAGGAAATCAAAGCAGCGCACAAA
GAAAACAATGTTCCCAATCGATCGACACGCATGAGTTCATCACGGAACTT
ATCAGCAAGTGCGGAGATGGGGCCGAGTGACTCGCAGCAACAGCCGCTTT
TTCCGGCCTTGAAAAGTGATGTGTCGAAAATGGACTCATCCTCTGAGGGG
AGGACAGATGCCCAGGACGTCGAAACGGAGTGCAATCTTCTGAAAGACGA
AAATCAAGCTTATGAGAGCTTCTGCACCAATCGAATCAGCGTCATTGAGG
AGTCGGGACCGGTGACACCTCCAAGCAAGCGACAAAAAATTAACGCAGCC
GACCTAGCCATTTGCACGCTTGCCATCGCGTCGGATATCAGCACGGGACT
TCGGGAGACTGGCTACGTTAGAGACTATGAATACGTAGATATACATGAGG
TGGTAGTTGACAAAATGTTTCCCGACGCGGACTGGGGGGAGGACCAGGAT
TTAATCGTCTAG

protein sequence of rna8774

>rna8774-protein ID=rna8774-protein|Name=rna8774|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MWKGSASKRPKCHYQKRLFRMLVVFLLKSISCAFQGMPSLVNSGRGIDRR
GPHTHVTSSIRGQADTSNVLVTSYAEDAVIWDVPVGIQRGEPPSDLKPNY
VTFLGLAEVFQDQDGIKLADLFDTDDGFRHAIRVAMREDLFIPDPTRSEK
VNRFLKDLGSSLHVCWEKSPTGYANLSRVFKQYGIGNLDGATFIKKLGGM
AGGGPQIKDSDGFLLRQKRFGSLIDIVTAGSRLKPAHSWHQDCNLPQMTV
MLGFPKTSGYLGTGVFSHAIKLSHPLKDQVPGGGQVVQYDEYEGVGKDPK
LPNILPESVILRPRYGKGREIMIYDDSWHIHSAPDHIYRTSVWRFM

mRNA from alignment at KK037250.1:130472..131703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8774 ID=rna8774|Name=rna8774|organism=Nannochloropsis gaditana|type=mRNA|length=1232bp|location=Sequence derived from alignment at KK037250.1:130472..131703+ (Nannochloropsis gaditana)
ATGTGGAAAGGCAGCGCCTCGAAGAGACCAAAATGCCACTATCAAAAACG
ATTGTTTCGAATGCTTGTGGTCTTCCTTTTGAAAAGCATTTCATGCGCTT
TTCAGGGCATGCCTTCCTTAGTTAATTCAGGTCGTGGAATTGACAGGAGG
GGCCCCCACACCCATGTGACCTCTTCAATACGCGGGCAGGCCGACACAAG
TAATGTCCTCGTGACATCGTATGCTGAAGATGCAGTTATCTGGGATGTAC
CAGTAGGTATTCAACGGGGAGAACCACCAAGCGACCTTAAACCCAACTAT
GTTACCTTCCTTGGCTTGGCAGAGGTCTTCCAAGACCAGGATGGAATCAA
ACTCGCAGATTTATTCGATACCGACGATGGTTTTAGGTAAATTACTTATC
AAATTCGACCTCAAACCCTTAAATGTCCAATTTGGGAGGGTCGCTCACTA
TTTTACAAATTCTCTGAATCAGGCATGCTATCCGTGTGGCCATGCGGGAA
GATCTTTTTATACCGGACCCGACACGTTCTGAGAAGGTGAATCGCTTTCT
CAAAGACCTTGGCTCCTCCTTGCACGTCTGTTGGGAGAAGTCTCCAACAG
GATACGCGAATTTGTCTCGGTAGGTGGTCAAAAAAGTGACTCTATCGGAG
GGATTTGTGTAGTGGTATTATTCTCTTCAGACCAGGGCCCATCCTCTGTC
CTGTCTTCGTCACACACGATGTAGGGTTTTCAAGCAATACGGGATCGGAA
ATTTAGACGGAGCGACATTTATCAAGAAACTAGGAGGCATGGCCGGGGGC
GGTCCTCAAATCAAAGACTCAGACGGTTTCCTGCTCCGTCAGAAGCGTTT
TGGGAGTCTCATCGATATTGTCACAGCAGGAAGCCGCCTCAAGCCTGCCC
ATTCGTGGCACCAGGATTGCAATTTACCGCAGATGACTGTCATGCTAGGG
TTTCCCAAAACTAGCGGCTATCTAGGCACGGGTGTCTTCTCTCATGCCAT
CAAATTGAGTCACCCATTGAAAGACCAGGTACCCGGTGGAGGGCAAGTAG
TCCAATACGATGAGTATGAGGGTGTCGGTAAAGATCCAAAATTACCAAAT
ATTTTGCCTGAATCCGTGATATTGCGGCCTCGGTacgggaaagggcgaga
gaTAATGATTTACGACGACAGCTGGCATATACATTCCGCTCCTGACCACA
TCTATCGGACGTCTGTATGGAGATTCATGTAA

Coding sequence (CDS) from alignment at KK037250.1:130472..131703+

>rna8774 ID=rna8774|Name=rna8774|organism=Nannochloropsis gaditana|type=CDS|length=3123bp|location=Sequence derived from alignment at KK037250.1:130472..131703+ (Nannochloropsis gaditana)
ATGTGGAAAGGCAGCGCCTCGAAGAGACCAAAATGCCACTATCAAAAACG
ATTGTTTCGAATGCTTGTGGTCTTCCTTTTGAAAAGCATTTCATGCGCTT
TTCAGGGCATGCCTTCCTTAGTTAATTCAGGTCGTGGAATTGACAGGAGG
GGCCCCCACACCCATGTGACCTCTTCAATACGCGGGCAGGCCGACACAAG
TAATGTCCTCGTGACATCGTATGCTGAAGATGCAGTTATCTGGGATGTAC
CAGTAGGTATTCAACGGGGAGAACCACCAAGCGACCTTAAACCCAACTAT
GTTACCTTCCTTGGCTTGGCAGAGGTCTTCCAAGACCAGGATGGAATCAA
ACTCGCAGATTTATTCGATACCGACGATGGTTTTAGGCATGCTATCCGTG
TGGCCATGCGGGAAGATCTTTTTATACCGGACCCGACACGTTCTGAGAAG
GTGAATCGCTTTCTCAAAGACCTTGGCTCCTCCTTGCACGTCTGTTGGGA
GAAGTCTCCAACAGGATACGCGAATTTGTCTCGGGTTTTCAAGCAATACG
GGATCGGAAATTTAGACGGAGCGACATTTATCAAGAAACTAGGAGGCATG
GCCGGGGGCGGTCCTCAAATCAAAGACTCAGACGGTTTCCTGCTCCGTCA
GAAGCGTTTTGGGAGTCTCATCGATATTGTCACAGCAGGAAGCCGCCTCA
AGCCTGCCCATTCGTGGCACCAGGATTGCAATTTACCGCAGATGACTGTC
ATGCTAGGGTTTCCCAAAACTAGCGGCTATCTAGGCACGGGTGTCTTCTC
TCATGCCATCAAATTGAGTCACCCATTGAAAGACCAGGTACCCGGTGGAG
GGCAAGTAGTCCAATACGATGAGTATGAGGGTGTCGGTAAAGATCCAAAA
TTACCAAATATTTTGCCTGAATCCGTGATATTGCGGCCTCGGTacgggaa
agggcgagagaTAATGATTTACGACGACAGCTGGCATATACATTCCGCTC
CTGACCACATCTATCGGACGTCTGTATGGAGATTCATGTAAATGTGGAAA
GGCAGCGCCTCGAAGAGACCAAAATGCCACTATCAAAAACGATTGTTTCG
AATGCTTGTGGTCTTCCTTTTGAAAAGCATTTCATGCGCTTTTCAGGGCA
TGCCTTCCTTAGTTAATTCAGGTCGTGGAATTGACAGGAGGGGCCCCCAC
ACCCATGTGACCTCTTCAATACGCGGGCAGGCCGACACAAGTAATGTCCT
CGTGACATCGTATGCTGAAGATGCAGTTATCTGGGATGTACCAGTAGGTA
TTCAACGGGGAGAACCACCAAGCGACCTTAAACCCAACTATGTTACCTTC
CTTGGCTTGGCAGAGGTCTTCCAAGACCAGGATGGAATCAAACTCGCAGA
TTTATTCGATACCGACGATGGTTTTAGGCATGCTATCCGTGTGGCCATGC
GGGAAGATCTTTTTATACCGGACCCGACACGTTCTGAGAAGGTGAATCGC
TTTCTCAAAGACCTTGGCTCCTCCTTGCACGTCTGTTGGGAGAAGTCTCC
AACAGGATACGCGAATTTGTCTCGGGTTTTCAAGCAATACGGGATCGGAA
ATTTAGACGGAGCGACATTTATCAAGAAACTAGGAGGCATGGCCGGGGGC
GGTCCTCAAATCAAAGACTCAGACGGTTTCCTGCTCCGTCAGAAGCGTTT
TGGGAGTCTCATCGATATTGTCACAGCAGGAAGCCGCCTCAAGCCTGCCC
ATTCGTGGCACCAGGATTGCAATTTACCGCAGATGACTGTCATGCTAGGG
TTTCCCAAAACTAGCGGCTATCTAGGCACGGGTGTCTTCTCTCATGCCAT
CAAATTGAGTCACCCATTGAAAGACCAGGTACCCGGTGGAGGGCAAGTAG
TCCAATACGATGAGTATGAGGGTGTCGGTAAAGATCCAAAATTACCAAAT
ATTTTGCCTGAATCCGTGATATTGCGGCCTCGGTacgggaaagggcgaga
gaTAATGATTTACGACGACAGCTGGCATATACATTCCGCTCCTGACCACA
TCTATCGGACGTCTGTATGGAGATTCATGTAAATGTGGAAAGGCAGCGCC
TCGAAGAGACCAAAATGCCACTATCAAAAACGATTGTTTCGAATGCTTGT
GGTCTTCCTTTTGAAAAGCATTTCATGCGCTTTTCAGGGCATGCCTTCCT
TAGTTAATTCAGGTCGTGGAATTGACAGGAGGGGCCCCCACACCCATGTG
ACCTCTTCAATACGCGGGCAGGCCGACACAAGTAATGTCCTCGTGACATC
GTATGCTGAAGATGCAGTTATCTGGGATGTACCAGTAGGTATTCAACGGG
GAGAACCACCAAGCGACCTTAAACCCAACTATGTTACCTTCCTTGGCTTG
GCAGAGGTCTTCCAAGACCAGGATGGAATCAAACTCGCAGATTTATTCGA
TACCGACGATGGTTTTAGGCATGCTATCCGTGTGGCCATGCGGGAAGATC
TTTTTATACCGGACCCGACACGTTCTGAGAAGGTGAATCGCTTTCTCAAA
GACCTTGGCTCCTCCTTGCACGTCTGTTGGGAGAAGTCTCCAACAGGATA
CGCGAATTTGTCTCGGGTTTTCAAGCAATACGGGATCGGAAATTTAGACG
GAGCGACATTTATCAAGAAACTAGGAGGCATGGCCGGGGGCGGTCCTCAA
ATCAAAGACTCAGACGGTTTCCTGCTCCGTCAGAAGCGTTTTGGGAGTCT
CATCGATATTGTCACAGCAGGAAGCCGCCTCAAGCCTGCCCATTCGTGGC
ACCAGGATTGCAATTTACCGCAGATGACTGTCATGCTAGGGTTTCCCAAA
ACTAGCGGCTATCTAGGCACGGGTGTCTTCTCTCATGCCATCAAATTGAG
TCACCCATTGAAAGACCAGGTACCCGGTGGAGGGCAAGTAGTCCAATACG
ATGAGTATGAGGGTGTCGGTAAAGATCCAAAATTACCAAATATTTTGCCT
GAATCCGTGATATTGCGGCCTCGGTacgggaaagggcgagagaTAATGAT
TTACGACGACAGCTGGCATATACATTCCGCTCCTGACCACATCTATCGGA
CGTCTGTATGGAGATTCATGTAA

Synonyms

Publications