rna8772, rna8772 (mRNA) Nannochloropsis gaditana

Overview
Namerna8772
Unique Namerna8772
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1146
Alignment locationKK037250.1:125588..127195 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF3611
Orig transcript idgnl|cribi|Naga_100220g4.7205.mrna
Orig protein idgnl|cribi|Naga_100220g4.7205
GeneTIC
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:125588..127195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TICgene8504Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8772rna8772-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21930.1cds8742Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8772 ID=rna8772|Name=rna8772|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp
ATGTCTTCTTCGACGGAGGCAACGGCGATGGAAGTAGGGGAGACAGAAGA
AAGTGGGAATACTAGCACGACAGGGGGCTCTGGCCTAAACGCTCCCACCG
CCGCCGCTCAAGAGGAGAGGAGCGTGGTGCTTGAGGAAGAGGCAGGCAAT
AAGAGCGGACGTCACGTCGCCTTGCACCCCTTAGCGCTTGTCACCATCTG
CGATCATTGCACACGGGTTAAGGTGGGCGGTTCGTTACTTCCCGTCACAT
CACGGATCCTGGGCATTCTTTTTGGTGTGCAAAATGGCCTGCAAGTGTCC
ATCACGGACGCATTCGAACTCCAGTACGAAATTACCGAAAATGGGAGTGT
CAAGATACCTGCTGGGTACGTGAATGAAAAGAAGGAGCTGTTTGGGGCCG
TGAATCAGGGTGCAGAGGTAATGGGATGGTACAGCGTGGGGGAGCATGTG
TTGCCTGGGGACCTGGAGATCCATCGGGCAATGACCGAGTGGAATGAGAG
CCCTTTCTTCCTCCTCCTCTCCCCGGCCGCCAGCCCCGGCGGGGACGAAG
GGGGAGCGGCGCCGGGTGTGAAAGAGGGTGAACTGCCCGCGCGCGTCTTT
GAGACAGAGCTTCACATGATGCGAGGCGTGCCCAGCATGCTCTTCGTGCC
CGTTCCCTTCCGTTTGACCGCGGCGGAGGCGGAGCGGATCTCGGTCGAGC
ACGTGGTAAAGGCTGCCCCGCTCGAAGCCGCCTCCTGGGTGGACCTGCAC
GTGGACGTGGTCAAGAGCTCTCTCTCCGCCCTGGTGGCGAGGGTCAAGGC
CATCCTCAGGCTCTTGCAGGCCGTCAAGACCGGGCAGGCGCCCCCCGACC
GCCGACTCCTCCGCATGGTGCGCGCTCTCTGCGACCGGCTCCCAGCGGCG
GGCCCGTCCGGCGACTTCCAGGACGCGTTAACCGGGGACTACCAAGACAG
CCTGGTGATCACGTACCTGGCCTCCATCACGAAGCTATCGTCTCTCTCGA
GCGATATGAGGGAATTGGAAGGAGTGCGGGTGGGCATGTACAATGAAAGC
GCGGCGAAGCACGAACGCGCATCCCCGGGCGGTATAACAAAAAGTCCTGG
GAGCACCCGTTGTTATGCACGCGACGACAGCAAAGTACGGACATGA
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protein sequence of rna8772

>rna8772-protein ID=rna8772-protein|Name=rna8772|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNL
KLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKF
LHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYI
FAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVI
NLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQP
VDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG
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mRNA from alignment at KK037250.1:125588..127195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8772 ID=rna8772|Name=rna8772|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp|location=Sequence derived from alignment at KK037250.1:125588..127195- (Nannochloropsis gaditana)
GTCATGGCCCGGTTGCTTGACATAGGTGTTCCATGCATGACTTTCTGGAC
GACCTGCTCATGATGCGCGTACCTTTCCTAGGACTTGCCGCGGGCGAGCT
CGACAGCAAGCATGGTGCGAAGGCTTAGCTCCTTCCTTCCATGCCTGGCT
GTGGCCTCTATTTTTCTTTTCAGCGTCGGCCACGCATATTTTCTCAGCAA
TATCCCTGCCCGCCTTGTACATGCCCAACAAGCTCTTCATTTGTATCCAA
GGTGAGTTGCTTGGATGATTGAGGGGGCGGAAACGAACGCGTGCTAAAGC
AGTGCACTGGGTCTCTACCCCTCCAGGCATAATTTGAAGCTGGCACCGCC
GTCTCTTTTCGCGACTCAGAAAGGCTTCGGCGTGCTTCCTGCACTCAAAG
CGGCATCTTTAAATGCTGACAGCGACCCGGCTGCAACTTTAAAGAGCGAT
GGTACGTCGCGGTCTCCTTGCTGGCGTCCCCCCTTTTTTCCCCGCCGCCT
CCTCCCGGCTCATTGTCCCCCTCTTGTTTGCAGGTCTGAAAATCGAACTT
CGTCAGTACTCGAAATTTTTGCATTCGACCGCCTGGTTCTCGTGGTGGGC
GCAAGTGATCTGTAACACCGTAGCGGGAGTGATCCTGTTCTTTACGAACT
CCTTCGTCGCCCCCTCCGGAGGGGGGCCCTCCCTGGCGGCAAAAAGCATC
TTTAGCAACGGCTACATCTTCGCGGCCGGCGGGCTCTGTCTGGGTGCGAT
CTCCATTTTCTGGACCTGGGGATTCACGGGGGTGGCCAAGCGCATTCGAC
GGGCTGTGCTGGAGCCGCCCACCTCCCTGGCTATGGTCCGACGCGTGGTG
CGCACGGCTATTGTCATCAACCTGCTCGGCCTCCTCACCGCCTTGATCGG
CGCCGAGCAATTCGTGGGAAACCTGATGGCGCGAGTGCTGTCTCAGCAGG
GGTTTTCTCCCCTAGTCATCAACCAATCGGCGATGGGCGGGGCTATCGCC
TCCCCGACAGTGCAGCCGGTAGACATCTTCGTCATTCAGGCGAACACGAA
CATCTTGCTCTCGCACTTCATCTCCCTGGTCTCATCCTTGCTGCTCTTAC
TACGATACAGCAAGATATCAAGGGCGGCCCGCGGATCGGGTTGAGAGGGG
ACAGGGCGGGACGTCAAGGAGGACAGAGCACGCATCGGCTCCTCAACGTA
TGACACATGGGACCACGGGAGGGATAGGGGGGAGGAGCGGGACCTGGTCG
TAAGGATCGAACCGTGGTTGTGTAACCACTCTCATTGGGGCGAAGGTTGG
CTCAAAAGGGAAGCCTGTACCTGTATTGGGAAGCTGAGGGAGCAGGAGAG
GCCTGGAGGGAGGGGGGCTGTGGGAATGTGCAGAGTTGTGAATTTAGAGG
GGCAGTGACTTGGGGGGCACATGAAGCGAAGAAGAGACAGAAAGGATGGA
ACTACCCGAGGCGCTTGGCTATGGACTCCTGCGTGCGTGTCATGTCCGTA
CTTTGCTGTCGTCGCGTGCATAACAACGGGTGCTCCCAGGACTTTTTGTT
ATACCGCCCGGGGATGCGCGTTCGTGCTTCGCCGCGCTTTCATTGTACAT
GCCCACCC
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Coding sequence (CDS) from alignment at KK037250.1:125588..127195-

>rna8772 ID=rna8772|Name=rna8772|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at KK037250.1:125588..127195- (Nannochloropsis gaditana)
GTCTGAAAATCGAACTTCGTCAGTACTCGAAATTTTTGCATTCGACCGCC
TGGTTCTCGTGGTGGGCGCAAGTGATCTGTAACACCGTAGCGGGAGTGAT
CCTGTTCTTTACGAACTCCTTCGTCGCCCCCTCCGGAGGGGGGCCCTCCC
TGGCGGCAAAAAGCATCTTTAGCAACGGCTACATCTTCGCGGCCGGCGGG
CTCTGTCTGGGTGCGATCTCCATTTTCTGGACCTGGGGATTCACGGGGGT
GGCCAAGCGCATTCGACGGGCTGTGCTGGAGCCGCCCACCTCCCTGGCTA
TGGTCCGACGCGTGGTGCGCACGGCTATTGTCATCAACCTGCTCGGCCTC
CTCACCGCCTTGATCGGCGCCGAGCAATTCGTGGGAAACCTGATGGCGCG
AGTGCTGTCTCAGCAGGGGTTTTCTCCCCTAGTCATCAACCAATCGGCGA
TGGGCGGGGCTATCGCCTCCCCGACAGTGCAGCCGGTAGACATCTTCGTC
ATTCAGGCGAACACGAACATCTTGCTCTCGCACTTCATCTCCCTGGTCTC
ATCCTTGCTGCTCTTACTACGATACAGCAAGATATCAAGGGCGGCCCGCG
GATCGGGTTGAGCATAATTTGAAGCTGGCACCGCCGTCTCTTTTCGCGAC
TCAGAAAGGCTTCGGCGTGCTTCCTGCACTCAAAGCGGCATCTTTAAATG
CTGACAGCGACCCGGCTGCAACTTTAAAGAGCGATGATGGTGCGAAGGCT
TAGCTCCTTCCTTCCATGCCTGGCTGTGGCCTCTATTTTTCTTTTCAGCG
TCGGCCACGCATATTTTCTCAGCAATATCCCTGCCCGCCTTGTACATGCC
CAACAAGCTCTTCATTTGTATCCAAGGTCTGAAAATCGAACTTCGTCAGT
ACTCGAAATTTTTGCATTCGACCGCCTGGTTCTCGTGGTGGGCGCAAGTG
ATCTGTAACACCGTAGCGGGAGTGATCCTGTTCTTTACGAACTCCTTCGT
CGCCCCCTCCGGAGGGGGGCCCTCCCTGGCGGCAAAAAGCATCTTTAGCA
ACGGCTACATCTTCGCGGCCGGCGGGCTCTGTCTGGGTGCGATCTCCATT
TTCTGGACCTGGGGATTCACGGGGGTGGCCAAGCGCATTCGACGGGCTGT
GCTGGAGCCGCCCACCTCCCTGGCTATGGTCCGACGCGTGGTGCGCACGG
CTATTGTCATCAACCTGCTCGGCCTCCTCACCGCCTTGATCGGCGCCGAG
CAATTCGTGGGAAACCTGATGGCGCGAGTGCTGTCTCAGCAGGGGTTTTC
TCCCCTAGTCATCAACCAATCGGCGATGGGCGGGGCTATCGCCTCCCCGA
CAGTGCAGCCGGTAGACATCTTCGTCATTCAGGCGAACACGAACATCTTG
CTCTCGCACTTCATCTCCCTGGTCTCATCCTTGCTGCTCTTACTACGATA
CAGCAAGATATCAAGGGCGGCCCGCGGATCGGGTTGAGCATAATTTGAAG
CTGGCACCGCCGTCTCTTTTCGCGACTCAGAAAGGCTTCGGCGTGCTTCC
TGCACTCAAAGCGGCATCTTTAAATGCTGACAGCGACCCGGCTGCAACTT
TAAAGAGCGATGATGGTGCGAAGGCTTAGCTCCTTCCTTCCATGCCTGGC
TGTGGCCTCTATTTTTCTTTTCAGCGTCGGCCACGCATATTTTCTCAGCA
ATATCCCTGCCCGCCTTGTACATGCCCAACAAGCTCTTCATTTGTATCCA
AGGTCTGAAAATCGAACTTCGTCAGTACTCGAAATTTTTGCATTCGACCG
CCTGGTTCTCGTGGTGGGCGCAAGTGATCTGTAACACCGTAGCGGGAGTG
ATCCTGTTCTTTACGAACTCCTTCGTCGCCCCCTCCGGAGGGGGGCCCTC
CCTGGCGGCAAAAAGCATCTTTAGCAACGGCTACATCTTCGCGGCCGGCG
GGCTCTGTCTGGGTGCGATCTCCATTTTCTGGACCTGGGGATTCACGGGG
GTGGCCAAGCGCATTCGACGGGCTGTGCTGGAGCCGCCCACCTCCCTGGC
TATGGTCCGACGCGTGGTGCGCACGGCTATTGTCATCAACCTGCTCGGCC
TCCTCACCGCCTTGATCGGCGCCGAGCAATTCGTGGGAAACCTGATGGCG
CGAGTGCTGTCTCAGCAGGGGTTTTCTCCCCTAGTCATCAACCAATCGGC
GATGGGCGGGGCTATCGCCTCCCCGACAGTGCAGCCGGTAGACATCTTCG
TCATTCAGGCGAACACGAACATCTTGCTCTCGCACTTCATCTCCCTGGTC
TCATCCTTGCTGCTCTTACTACGATACAGCAAGATATCAAGGGCGGCCCG
CGGATCGGGTTGAGCATAATTTGAAGCTGGCACCGCCGTCTCTTTTCGCG
ACTCAGAAAGGCTTCGGCGTGCTTCCTGCACTCAAAGCGGCATCTTTAAA
TGCTGACAGCGACCCGGCTGCAACTTTAAAGAGCGATGATGGTGCGAAGG
CTTAGCTCCTTCCTTCCATGCCTGGCTGTGGCCTCTATTTTTCTTTTCAG
CGTCGGCCACGCATATTTTCTCAGCAATATCCCTGCCCGCCTTGTACATG
CCCAACAAGCTCTTCATTTGTATCCAAG
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Synonyms
Publications