EWM21930.1, cds8742 (CDS) Nannochloropsis gaditana

Overview
NameEWM21930.1
Unique Namecds8742
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:126945..127084 -
Alignment locationKK037250.1:126745..126869 -
Alignment locationKK037250.1:126052..126662 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21930.1
ProductProtein of unknown function DUF3611
Orig transcript idgnl|cribi|Naga_100220g4.7205.mrna
GeneTIC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:126945..127084 -
KK037250.1supercontigKK037250.1:126745..126869 -
KK037250.1supercontigKK037250.1:126052..126662 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR022051DUF3611
Homology
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|585102277|gb|EWM21930.1| (Protein of unknown function DUF3611 [Nannochloropsis gaditana])

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG 291
            MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG
Sbjct:    1 MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG 291          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|553182023|ref|XP_005853665.1| (hypothetical protein NGA_0454000 [Nannochloropsis gaditana CCMP526] >gi|422295398|gb|EKU22697.1| hypothetical protein NGA_0454000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0
Identity = 290/291 (99.66%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG 291
            MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPAL+AASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG
Sbjct:    1 MVRRLSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHLYPRHNLKLAPPSLFATQKGFGVLPALEAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARGSG 291          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|298705310|emb|CBJ49000.1| (CHloroplast inner membrane protein TIC 21 [Ectocarpus siliculosus])

HSP 1 Score: 141.354 bits (355), Expect = 7.435e-37
Identity = 83/211 (39.34%), Postives = 118/211 (55.92%), Query Frame = 0
Query:   87 SDGLKI-------ELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRR--AVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAAR 288
            SDG +I       +L++ +      +W SWWAQ I +TVA +IL F+N+    S  G      +I  NG   A   L   A SI WTWG+   AK  R    + E   +   +R  +R  + IN+ G+L AL+GAEQ VG L+A+VL  QGF P V+  +A    +A    + +D+F++QANTN LLSHF SL +SL LL R  K+++ A+
Sbjct:   60 SDGEEILDRSVVKQLKRSTTVFRQVSWLSWWAQTILSTVAFIILLFSNAVTNRSTRG------NILGNGVALAVASLACSAASICWTWGYNLKAKGWRNLGTLAEVDDAQVRMRSSLRMGLYINVAGMLLALVGAEQIVGTLVAKVLYAQGFQPSVMVGTAGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLAKLAK 264          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|219127240|ref|XP_002183847.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404570|gb|EEC44516.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 121.709 bits (304), Expect = 2.159e-28
Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = 0
Query:   76 NADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFV---APSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLA-MVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLL 276
            + D +P     +D   + +++ S  L   +WFSWW+Q+I  TV+ VIL F+ S V   A  G  PS          ++ +  G+ + A SI WTWG      R         +  A M RR VR  + +NL+GLL  L+ AE+ VG L  +VL+ + F P    Q+A+ G++    +QP+DI V+QANTN LLSHF SLVS L L
Sbjct:  179 DGDEEPPFQATTD---LVVKETSLVLKRVSWFSWWSQIILTTVSAVILSFSRSVVGRNATVGPVPS----------FLLSGAGVLISACSIIWTWGNGARLSRRLLRRPTTRSQAADMFRRAVRVGVTLNLIGLLVTLLAAEEIVGALAIKVLTNRNFGP----QAALLGSVEG-QLQPLDILVVQANTNTLLSHFCSLVSLLYL 365          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|1210513841|dbj|GAX27140.1| (hypothetical protein FisN_13Lh310 [Fistulifera solaris])

HSP 1 Score: 108.997 bits (271), Expect = 1.247e-24
Identity = 75/187 (40.11%), Postives = 96/187 (51.34%), Query Frame = 0
Query:   98 SKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAG-GLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLA-MVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSK 282
            SK L   +WFSWW+QVI  +V+GVIL F    +       S    S F     F +G GL + A+SI WTWG      R       P    A M+RR V+  + INL+GLL  L+ AE+ VG L   VL+         + S+         VQP+D+ V+QANTN LLSHF SL S    LL Y+K
Sbjct:   78 SKSLRRVSWFSWWSQVILTSVSGVILGFARRTLVQRSTALSTGGTSSF-----FLSGIGLLVSAVSILWTWGNGSRLSRRLVRRSLPRAKAAHMLRRAVQVGVTINLVGLLVHLLAAEEIVGTLALHVLT---------SSSSRNAMFPEGLVQPLDVLVVQANTNSLLSHFCSLAS----LLFYTK 246          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|551661148|ref|XP_005833341.1| (translocon at the inner envelope membrane of chloroplast 21 like protein, partial [Guillardia theta CCMP2712] >gi|428177481|gb|EKX46361.1| translocon at the inner envelope membrane of chloroplast 21 like protein, partial [Guillardia theta CCMP2712])

HSP 1 Score: 105.531 bits (262), Expect = 4.801e-24
Identity = 73/202 (36.14%), Postives = 102/202 (50.50%), Query Frame = 0
Query:  101 LHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVR---RVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTV-----------------------QPVDIFVIQANTNILLSHFISLVSSLLL 276
            +  ++W SWWAQVI + ++ + LFF N+   P  G       +I +NG   A  GL L  I++ WT G+    +RI    LE P +    R   R VR  +++ L G+   L+GAEQ VG L+A+ +S    S L+ N    GG IA+ T                        Q +DIFV+QANTN LLSH  SLV+SL +
Sbjct:    1 IRQSSWLSWWAQVILSVISAITLFFANAVRGPMQG-------NILANGVFMAGLGLALSFINVIWTTGY----QRIAAKQLETPEAAMSFRSFSRTVRVGVIVALTGMFLTLLGAEQIVGTLVAKSISG---SILIAN----GGGIAAQTASLQLQVCSFIDPRQLGFRTECCWQALDIFVVQANTNTLLSHLSSLVNSLFI 184          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|1210513204|dbj|GAX27601.1| (hypothetical protein FisN_13Hh310 [Fistulifera solaris])

HSP 1 Score: 106.686 bits (265), Expect = 7.609e-24
Identity = 77/188 (40.96%), Postives = 99/188 (52.66%), Query Frame = 0
Query:   98 SKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAG-GLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLA--MVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSK 282
            SK L   +WFSWW+QVI  +V+GVIL F    +       S    S F     F +G GL + A+SI WTWG  G     R      P + A  M+RR V+  + INL+GLL  L+ AE+ VG L  +VL+         + S+         VQP+DI V+QANTN LLSHF SL S    LL Y+K
Sbjct:   69 SKSLRRVSWFSWWSQVILTSVSGVILGFARRTLVQRNTALSTGGTSSF-----FLSGIGLIVSAVSILWTWG-NGSRLSRRLIRRPLPRAKAAHMLRRAVQVGVTINLVGLLVHLLAAEEIVGTLALQVLT---------SSSSRNAMFPEGLVQPLDILVVQANTNSLLSHFCSLAS----LLFYTK 237          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|223998748|ref|XP_002289047.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976155|gb|EED94483.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 98.5969 bits (244), Expect = 1.116e-20
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 0
Query:   98 SKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWG---------FTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLR 279
            SK L +++W SWW+Q+I   V+ +   F  + +      P   +K   ++ ++    G+    +SI WTWG               R+  A L        +RRV+   + INL+GLLT+L+GA+  VG L+A+ +              MGG +AS T+QP+D+ V+QANTNIL SHF+S+ + LL L R
Sbjct:   86 SKSLTASSWLSWWSQLILTVVSSITFVFARNVMESQTVSPLEFSK--VASKFVLPGVGIVTSVMSIIWTWGGRRLARRFVRRSQTSRVEAANL--------LRRVITVGVTINLIGLLTSLLGAQYIVGTLVAKAMQNVVGF-----GGGMGGMVASQTLQPLDVLVVQANTNILTSHFVSM-ACLLWLTR 260          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|873241537|emb|CEL92434.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 97.4413 bits (241), Expect = 3.632e-20
Identity = 63/211 (29.86%), Postives = 107/211 (50.71%), Query Frame = 0
Query:   77 ADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVL--SQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISR 285
            AD   AA  +   ++ +L+   + L + AW+SWW Q+    V+  IL F N+          L       NG   A   +    +S+ WT+G+T ++  +RR    P  ++  ++  +R+ + INL+GLL +++ AEQ VG L +++L  SQ  F                 T+QP+DI V+QANTN  ++H + L++SL L  R  ++ +
Sbjct:   18 ADRSSAAPKERTAVQ-QLQVVRRALWNVAWWSWWPQLALTVVSASILIFANTI------SEYLTLTQAILNGTALAGVAVFFSILSLIWTYGYTRLSLDLRRTA--PSKAVVSIKHWLRSGVWINLIGLLLSMVSAEQIVGVLFSKILRMSQLVFGGGPGGVVRFSAPTGGLTLQPLDILVVQANTNTSVAHLVGLLTSLWLATRNERLQQ 219          
BLAST of EWM21930.1 vs. NCBI_GenBank
Match: gi|504987065|ref|WP_015174167.1| (DUF3611 domain-containing protein [Oscillatoria nigro-viridis] >gi|428239045|gb|AFZ04831.1| hypothetical protein Osc7112_0198 [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 95.5153 bits (236), Expect = 3.950e-20
Identity = 63/199 (31.66%), Postives = 106/199 (53.27%), Query Frame = 0
Query:   85 LKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIA-SPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSK 282
            L +D L + +++ +  L +T W  +W Q++   VAG+IL F   F  PS    + +  +    G  FA  GL + A S++ ++ FT +++++R          A   + VR +++ NL G+L  LIGAE   G L+A+ L+Q         Q+  G A+     +QP+DIFV+ ANT+  ++HF+ +  +L LL R  K
Sbjct:    5 LDNDKLPVAVQRVAFALRTTGWVCFWVQLVLAVVAGIILLFAIPFAIPSATTAAGSNSAGTGGGVFFAICGLAVLAYSVYRSFRFTRLSRQLRSPANAVRPKKADTIKEVRLSLMSNLSGMLLTLIGAEAISGTLLAKSLAQP--------QALFGAAVDLGRFIQPLDIFVVLANTHATVAHFVGIFGALWLLDRIHK 195          
The following BLAST results are available for this feature:
BLAST of EWM21930.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102277|gb|EWM21930.1|0.000e+0100.00Protein of unknown function DUF3611 [Nannochlorops... [more]
gi|553182023|ref|XP_005853665.1|0.000e+099.66hypothetical protein NGA_0454000 [Nannochloropsis ... [more]
gi|298705310|emb|CBJ49000.1|7.435e-3739.34CHloroplast inner membrane protein TIC 21 [Ectocar... [more]
gi|219127240|ref|XP_002183847.1|2.159e-2838.05predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210513841|dbj|GAX27140.1|1.247e-2440.11hypothetical protein FisN_13Lh310 [Fistulifera sol... [more]
gi|551661148|ref|XP_005833341.1|4.801e-2436.14translocon at the inner envelope membrane of chlor... [more]
gi|1210513204|dbj|GAX27601.1|7.609e-2440.96hypothetical protein FisN_13Hh310 [Fistulifera sol... [more]
gi|223998748|ref|XP_002289047.1|1.116e-2034.03predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|873241537|emb|CEL92434.1|3.632e-2029.86unnamed protein product [Vitrella brassicaformis C... [more]
gi|504987065|ref|WP_015174167.1|3.950e-2031.66DUF3611 domain-containing protein [Oscillatoria ni... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8772rna8772Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications