rna8763, rna8763 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8763
Unique Name	rna8763
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1132
Alignment location	KK037250.1:108762..110497 -

Link to JBrowse

Properties


Property Name	Value
Product	e1a binding protein p400
Orig transcript id	gnl\|cribi\|Naga_101595g1.2717.mrna
Orig protein id	gnl\|cribi\|Naga_101595g1.2717
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:108762..110497 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101595g1	gene8495	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8763	rna8763-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21940.1	cds8733	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:108762..110497-
coding sequence from alignment at KK037250.1:108762..110497-

mRNA sequence

>rna8763 ID=rna8763|Name=rna8763|organism=Nannochloropsis gaditana|type=mRNA|length=1132bp
ATGGGGGGAGCAGCGGTGGCCAGGCCAGGCGGTGGCGGTGGGCGAGGAGG
GAAAGGGAGGGGTTGCACCGGCGGTGCCGGAGTGAGAGCGGGAGGGTCGG
CTGGGAAGGCCAAGGAGGGGGTCCTCGGGGTGGCTCAATTTCCGGGCGCA
CCGCCGTCCTCCATGTCTGCTCCCACAGGGCCCTGTCAGTACCCAGCCCC
GGGCTACTATGCCCCAAACCCCTCCACTCATCCCCAGCTCGGCGCCAGCT
CAAGCCACCGGCTTTTGTCCTCGGGGCAGGCCTCGCATCCGCATCACGCG
CTTGAGCTTCGACAGCAGCTGCACTTACAACAGCAACGGGAACTGCAGCA
GCAGCACCTGCAGCAGCAGCAACTGCAGCAGCAGCAACAACAGCAGCAGC
AACAACAGCAGCAATCGCAACAGCAGCGTGACTTCCAGCATCAGCAGGAG
CTGTACCGGCAACAATGGGCCCACCACCAGCAATACCTCGCCCATTACTA
CGCCCAGCAGCAAGAGCAGCAATGTCAAGTCACCCACCCCCATCCTCAGC
AACACTATCAGCTCCAGACACAGCAGCCGTCTCCTTACCCCTATGACGCC
CACCAAATGACCGGGAATGGATCCAGTCCTTCCTACCCGCCCCTGGCAGC
GCCCCCTCCATCGCTCTTTCCCCCCTCCTTCGCGCCCGCACACAACGGCG
TCGACTATCCGCACCCCTACATGTACGCACAAAGCACGTCTGACACTTTT
GCACCTCTCCCAAGACAAGACGGGAGAGGGGGAGGGGGAGGGCAGGGATA
GTGCCCATGTTCTGGAGAAGTAAGTGGGCACGCGAGAGAAGTGCGTCGAA
AGCCTGTACATATGCTCATGTCCATAAAAGCAAAGCCGTCGAGAATGGTC
CGGAGATGGCTCTCATCTCCTCTTGTAGTAATAGGGTCTTAGGGATGTGA
ATCTTTCCACAGCGAGGGGAGGGGCGGCGACAAAGCCGCACCCTCCCAGA
AAGATGCAAAATTAAAACGAGAGTATCAGCCTGACCACACAAGACGTGGG
GTTTTATGTCTTGCATGGCCTATGCCGGCCAGCACGCTTTCTTTCCGTCC
ATTTCCGCTACCACCGTGCGTGTATCCTCCCC

protein sequence of rna8763

>rna8763-protein ID=rna8763-protein|Name=rna8763|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MELWSLMHFLMPHLFRSRKEFSYWFSNPLNSMVQGARALSDGLIRRLHTI
MRPFLLRRLKKDVEKQLPGKFEHVVLCPLSRRQAHLYEEFMARSSTRAAL
AGGNFMGMMNVLMQLRKVCNHPDLFEARPIRSPYAMDPLALPVPALALDL
LSPSSPLARALLHALKLDQDRARDLGPLIERFTCVVPRVRSSFPILLSSS
ARPPSLPPALHPPLRHLRTRLLRPYHPAALRQSLLFPDKWLVQFDAGKLQ
TLARLLLSLKRGHHRVLIFTQMTKMLDVLEQFLNLNGHVYLRLDGATGVD
RRQKLMDRFNNDERIFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDA
QAQDRAHRIGQTREVHIYR

mRNA from alignment at KK037250.1:108762..110497-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8763 ID=rna8763|Name=rna8763|organism=Nannochloropsis gaditana|type=mRNA|length=1736bp|location=Sequence derived from alignment at KK037250.1:108762..110497- (Nannochloropsis gaditana)
ATGGAGCTCTGGTCCCTCATGCACTTCCTCATGCCGCACCTCTTCCGCTC
CCGCAAGGAGTTCTCCTACTGGTTCTCCAACCCCCTCAACTCCATGGTCC
AGGGGGCGCGCGCCCTCTCGGACGGCCTCATCCGCCGCCTGCACACGATC
ATGCGTCCCTTCCTCCTCCGCCGCCTCAAGAAGGACGTGGAGAAGCAGCT
GCCCGGGAAGTTCGAGCACGTGGTCCTCTGCCCCCTCTCCCGGCGCCAGG
CCCACCTCTACGAGGAGTTTATGGCCCGCTCCTCCACGCGCGCGGCCCTG
GCCGGCGGGAACTTCATGGGCATGATGAACGTGCTCATGCAGCTCCGGAA
GGTCTGCAACCACCCCGACCTGTTCGAGGCCCGCCCCATCCGCTCGCCCT
ACGCCATGGACCCGCTCGCCCTCCCCGTGCCCGCCCTCGCGCTCGACCTC
CTCTCCCCCTCCTCTCCCCTCGCCAGGGTCTCCCCTTCCCTCTTGCACTT
CCTCTGGCGCGCCCCGGAGCTAGCTCCGGCCTGGCTGGCCTCCCCCTCCT
CCCTCTTCGTCCCCCCCGAGCCCCAGGAGGACGCCCACGTCCTCCACCGC
GCACTCAGCCTCGCTGCTACCCCCTCCCAGCTCCAGGCGCCCCCGCCCTC
CCTCCAGTCCTCCCTCGGCGCCTCCGACCCCGCCGTCGCCGCCCACCTGG
CTGCCCTCTCCGCGGCCCTTGCCCGCCAGAGGGGCCTACAGCACGCCCTC
ATGGCCCGACTCAACGCCTGGCGCTGTGGCGGCCTCTTCTTCGGGCCGGC
GGGGGAGCGAGAAGAAGGTGCCGCGGACGCCGACTCCATCCGCTTCAATC
CTCCCTCCTCCCCCTCCTCCCCCTCCCCCTCCGGCTACGGCCTTGGCCCC
TCCCTCCGTCGCTCCCTCCACGCGGGCATGTGTCCCACGGCGCTCGCCCT
CGCCGCCCGCTCCCAGCCCTCCCTCCTCCTCCAGACCCCGCAGGCCCTCC
TCCACGCCCTCAAGCTCGACCAGGACCGTGCCCGGGACCTGGGTCCCCTC
ATCGAACGCTTCACTTGCGTCGTCCCCCGAGTCCGCTCCTCCTTTCCCAT
CCTCCTCTCCTCCTCTGCCCGCCCCCCCTCCCTCCCCCCCGCCCTCCATC
CCCCCCTCCGCCACCTCCGCACCCGCCTCCTCCGGCCCTACCACCCGGCC
GCCCTCCGCCAGTCCCTCCTCTTCCCGGACAAATGGCTGGTCCAGTTCGA
CGCCGGGAAGCTCCAGACGCTCGCCCGCCTTCTCCTCTCCCTCAAGCGGG
GCCACCACCGCGTCCTCATCTTCACCCAGATGACCAAGATGCTGGACGTG
CTCGAGCAGTTCCTGAACCTCAACGGCCACGTCTACTTGCGCCTTGACGG
GGCCACGGGGGTGGACCGGCGCCAGAAGCTCATGGACCGCTTCAACAACG
ACGAGCGGATTTTCTGCTTCATCCTCTCCACGCGCTCCGGGGGTCTGGGC
ATCAACCTGACGGGCGCAGACACCGTGAGTGATTCGCCGGGCCGGTGGCA
TTCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTTCCTCTCACCCCTCCCTCCTCTCCTTCGCAGGTCATCTTCTACGACT
CGGACTGGAATCCGGCCATGGATGCACAGGCTCAGGACCGCGCCCACCGC
ATTGGTCAGACGCGCGAGGTTCACATCTACAGGTGA

Coding sequence (CDS) from alignment at KK037250.1:108762..110497-

>rna8763 ID=rna8763|Name=rna8763|organism=Nannochloropsis gaditana|type=CDS|length=3330bp|location=Sequence derived from alignment at KK037250.1:108762..110497- (Nannochloropsis gaditana)
GTCATCTTCTACGACTCGGACTGGAATCCGGCCATGGATGCACAGGCTCA
GGACCGCGCCCACCGCATTGGTCAGACGCGCGAGGTTCACATCTACAGGT
GAGCCCTCCTCCACGCCCTCAAGCTCGACCAGGACCGTGCCCGGGACCTG
GGTCCCCTCATCGAACGCTTCACTTGCGTCGTCCCCCGAGTCCGCTCCTC
CTTTCCCATCCTCCTCTCCTCCTCTGCCCGCCCCCCCTCCCTCCCCCCCG
CCCTCCATCCCCCCCTCCGCCACCTCCGCACCCGCCTCCTCCGGCCCTAC
CACCCGGCCGCCCTCCGCCAGTCCCTCCTCTTCCCGGACAAATGGCTGGT
CCAGTTCGACGCCGGGAAGCTCCAGACGCTCGCCCGCCTTCTCCTCTCCC
TCAAGCGGGGCCACCACCGCGTCCTCATCTTCACCCAGATGACCAAGATG
CTGGACGTGCTCGAGCAGTTCCTGAACCTCAACGGCCACGTCTACTTGCG
CCTTGACGGGGCCACGGGGGTGGACCGGCGCCAGAAGCTCATGGACCGCT
TCAACAACGACGAGCGGATTTTCTGCTTCATCCTCTCCACGCGCTCCGGG
GGTCTGGGCATCAACCTGACGGGCGCAGACACCATGGAGCTCTGGTCCCT
CATGCACTTCCTCATGCCGCACCTCTTCCGCTCCCGCAAGGAGTTCTCCT
ACTGGTTCTCCAACCCCCTCAACTCCATGGTCCAGGGGGCGCGCGCCCTC
TCGGACGGCCTCATCCGCCGCCTGCACACGATCATGCGTCCCTTCCTCCT
CCGCCGCCTCAAGAAGGACGTGGAGAAGCAGCTGCCCGGGAAGTTCGAGC
ACGTGGTCCTCTGCCCCCTCTCCCGGCGCCAGGCCCACCTCTACGAGGAG
TTTATGGCCCGCTCCTCCACGCGCGCGGCCCTGGCCGGCGGGAACTTCAT
GGGCATGATGAACGTGCTCATGCAGCTCCGGAAGGTCTGCAACCACCCCG
ACCTGTTCGAGGCCCGCCCCATCCGCTCGCCCTACGCCATGGACCCGCTC
GCCCTCCCCGTGCCCGCCCTCGCGCTCGACCTCCTCTCCCCCTCCTCTCC
CCTCGCCAGGGTCATCTTCTACGACTCGGACTGGAATCCGGCCATGGATG
CACAGGCTCAGGACCGCGCCCACCGCATTGGTCAGACGCGCGAGGTTCAC
ATCTACAGGTGAGCCCTCCTCCACGCCCTCAAGCTCGACCAGGACCGTGC
CCGGGACCTGGGTCCCCTCATCGAACGCTTCACTTGCGTCGTCCCCCGAG
TCCGCTCCTCCTTTCCCATCCTCCTCTCCTCCTCTGCCCGCCCCCCCTCC
CTCCCCCCCGCCCTCCATCCCCCCCTCCGCCACCTCCGCACCCGCCTCCT
CCGGCCCTACCACCCGGCCGCCCTCCGCCAGTCCCTCCTCTTCCCGGACA
AATGGCTGGTCCAGTTCGACGCCGGGAAGCTCCAGACGCTCGCCCGCCTT
CTCCTCTCCCTCAAGCGGGGCCACCACCGCGTCCTCATCTTCACCCAGAT
GACCAAGATGCTGGACGTGCTCGAGCAGTTCCTGAACCTCAACGGCCACG
TCTACTTGCGCCTTGACGGGGCCACGGGGGTGGACCGGCGCCAGAAGCTC
ATGGACCGCTTCAACAACGACGAGCGGATTTTCTGCTTCATCCTCTCCAC
GCGCTCCGGGGGTCTGGGCATCAACCTGACGGGCGCAGACACCATGGAGC
TCTGGTCCCTCATGCACTTCCTCATGCCGCACCTCTTCCGCTCCCGCAAG
GAGTTCTCCTACTGGTTCTCCAACCCCCTCAACTCCATGGTCCAGGGGGC
GCGCGCCCTCTCGGACGGCCTCATCCGCCGCCTGCACACGATCATGCGTC
CCTTCCTCCTCCGCCGCCTCAAGAAGGACGTGGAGAAGCAGCTGCCCGGG
AAGTTCGAGCACGTGGTCCTCTGCCCCCTCTCCCGGCGCCAGGCCCACCT
CTACGAGGAGTTTATGGCCCGCTCCTCCACGCGCGCGGCCCTGGCCGGCG
GGAACTTCATGGGCATGATGAACGTGCTCATGCAGCTCCGGAAGGTCTGC
AACCACCCCGACCTGTTCGAGGCCCGCCCCATCCGCTCGCCCTACGCCAT
GGACCCGCTCGCCCTCCCCGTGCCCGCCCTCGCGCTCGACCTCCTCTCCC
CCTCCTCTCCCCTCGCCAGGGTCATCTTCTACGACTCGGACTGGAATCCG
GCCATGGATGCACAGGCTCAGGACCGCGCCCACCGCATTGGTCAGACGCG
CGAGGTTCACATCTACAGGTGAGCCCTCCTCCACGCCCTCAAGCTCGACC
AGGACCGTGCCCGGGACCTGGGTCCCCTCATCGAACGCTTCACTTGCGTC
GTCCCCCGAGTCCGCTCCTCCTTTCCCATCCTCCTCTCCTCCTCTGCCCG
CCCCCCCTCCCTCCCCCCCGCCCTCCATCCCCCCCTCCGCCACCTCCGCA
CCCGCCTCCTCCGGCCCTACCACCCGGCCGCCCTCCGCCAGTCCCTCCTC
TTCCCGGACAAATGGCTGGTCCAGTTCGACGCCGGGAAGCTCCAGACGCT
CGCCCGCCTTCTCCTCTCCCTCAAGCGGGGCCACCACCGCGTCCTCATCT
TCACCCAGATGACCAAGATGCTGGACGTGCTCGAGCAGTTCCTGAACCTC
AACGGCCACGTCTACTTGCGCCTTGACGGGGCCACGGGGGTGGACCGGCG
CCAGAAGCTCATGGACCGCTTCAACAACGACGAGCGGATTTTCTGCTTCA
TCCTCTCCACGCGCTCCGGGGGTCTGGGCATCAACCTGACGGGCGCAGAC
ACCATGGAGCTCTGGTCCCTCATGCACTTCCTCATGCCGCACCTCTTCCG
CTCCCGCAAGGAGTTCTCCTACTGGTTCTCCAACCCCCTCAACTCCATGG
TCCAGGGGGCGCGCGCCCTCTCGGACGGCCTCATCCGCCGCCTGCACACG
ATCATGCGTCCCTTCCTCCTCCGCCGCCTCAAGAAGGACGTGGAGAAGCA
GCTGCCCGGGAAGTTCGAGCACGTGGTCCTCTGCCCCCTCTCCCGGCGCC
AGGCCCACCTCTACGAGGAGTTTATGGCCCGCTCCTCCACGCGCGCGGCC
CTGGCCGGCGGGAACTTCATGGGCATGATGAACGTGCTCATGCAGCTCCG
GAAGGTCTGCAACCACCCCGACCTGTTCGAGGCCCGCCCCATCCGCTCGC
CCTACGCCATGGACCCGCTCGCCCTCCCCGTGCCCGCCCTCGCGCTCGAC
CTCCTCTCCCCCTCCTCTCCCCTCGCCAGG

Synonyms

Publications