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Properties
| Property Name | Value |
|---|
| Product | ssm4 like ring finger protein |
| Orig transcript id | gnl|cribi|Naga_100157g13.46.mrna |
| Orig protein id | gnl|cribi|Naga_100157g13.46 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:98728..101526 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8760 ID=rna8760|Name=rna8760|organism=Nannochloropsis gaditana|type=mRNA|length=3523bp
TTCCGGCCTGCATCCGCACAATTGTGTGCACATTATGCACCTCCCTTTTA
AAATTTTCATTCCCGCACAGTCTACGACAGGTGCGTACATTCTACGCTTC
GGCAACCCTCGTCGTAGAATAAATACAAGAGGCACCTCGTCCCCGTCGTG
TCACGTGAGGCCGCCAATCTCAGCACCTCACCCCACCCGGGCAGATGGTA
CGGGAGAAAGGTGCAATGGAAATTAGGGCCATGGAGGAAGGAGAAGTGCG
GATCAAGTCTCCCATGGCCTTGGTAACATCCCCTGACGGCAAGAAACCCG
GCCCCGTCCGCGGGGCCCATCTCGGGTGGACCCTGAATCTGTACGCGACC
GAGACTCGTAGGGGCGCCAAAGGGAACAATGTGACGGTCAAAAAGACCAT
TTTGGAGGGCGTTACAGGTTCTGTACGCTCTGGTAACATGATGGCGTTGA
TGGGCGCGTCAGGCGCGGGGAAGTCCTCCCTCCTCGACTGCATCTCGCTC
CGCAACCAGAAATTTGAAGGGAACGTTTTCGTGGACGGGAAGCCGGCGGA
CAATGCCTTTTTCGGTCTGACAGCCTACGTCTACCAGGATGATTTGTTCT
TCCCCACCCTGACCGTGCGGGAGCATCTCCGTTTCCACGCCATGGTCCGG
ATGCCCAAGACCGTCCAACCCCATATCAAGGCTGAGAGGGTGGAGAGCAT
CCTCTTGGACGTAGGCTTGCAGGGCTGCTCGGACGCCTTGATCGGCGGCG
CCTCCTCTCTCATCCGGGGCATTTCGGGGGGCGAACGGAAACGTGTGGCC
GTGGCGACGGAGCTATTGTCGAACCCGGCGATTCTCTTCCTCGATGAGCC
CACCTCGGGCCTGGATTCGTTCATGGCGGAAGCGGTCTGCACGCTCCTCC
GCAAGCTGGCTAATACGGGGAAAATCGTCGTCTGTGTCATCCACCAGCCG
TCCTCAGACACCTTCAAGCTCTTCACCCATCTGTGCCTCCTCGCCAAGGG
CCGCATGGCCTACTTGGGCGAGCTGCCCAAGGCCGTCGACTACTTCGCCG
CACTCGGGCACGCCTGCCCCCCCAACTTCAACCCTGCCGATTTTTTCATC
GAGGAGCTCGCGGTGGTTCCCAGCGACTACGAGAAGAGCATGGCCAGACT
GCGGGTGGTCACGGATGCTTACCAGGACTCGGACCTGCGGAAGCAGAACG
AGAAATGGCTCTCGAAGGTGGACCCTGCGGTCTTGAGCAAACCAAGACGG
CGCACGGGCATCGCCATCACCGAGTACCCGGCCACGGCGGACACCCAATT
CTGGGAGTCGTGCCGACGGACCATATTGCAGTATAAGCGGGAGCCGGTCC
TGACACGAGCGCGCCTCGTCAACTCGATCCTGATGGGGGTACTCCTGGGC
CTGGTGTACTTCGACCAGGACACCACCTACAAGGCGGTGCAGAACAAGAT
CGGCGTGGCCTTCATCGTGACCATGAACCAGTGCATCTCCGCCACCTTCG
GAGTAGTGCAGGAGGTCCCTCGAGACTTCGCCGTCTTTATGCGCGAGTAT
CTCGCCGGTGCCAACCGCGTTTCCTCCTACTTCCTAGCCCGGACCCTGAG
CGAGATTCCCTTCCAGATCCTCTTTCCCTTGGTGTTCGGCTCCATTGTCT
ACGGCATGGTGGGGTTGCGGCCCACCGCCGGTGCCTACATCACCTTCTGC
CTCGTCCTTATCCTCTGCGCGAATACGGCTGTCTCCATGGGGTACGCCTT
GTCGGCTGTCTTCCGCAACACCACGGCGGCCATCGCGGCGGGCTCGGTAG
TGATCATGCCTATGGCTCTTTTCTCGGGCCTACTCCTCGACATGGATAAC
ATCGCTCCTTGGCTCCGGCCTCTTCAATTCCTCTCCATCATCAGGTACAC
CTACCATGCCATCATCATCAACGAGTATGCGAACCAGCCCATCAACTGCG
GCTTCAACGTGATCTGTCCCTTCCGGACTGGAAACGCCGTCCTCACCTAC
GTGGGGGCTGCCCCCGACGAGCTCTCCTTCAACATGGGCATGCTCTTCGT
CTTTATGCTCTGCTTCCGTCTCGTGGCCTTCATGGCCCTCAAGTGGCACT
CCACGCGGGTTGCGTCTCTGTAAGGGGAGGAGGGAGGGCGGGAGGATGGA
AGGGGGGAGAAAGGGAGGAAATGAGAGAGAGAAGGAGAGAAAAAAGGACG
GAGGAGAAATGGAAGGGGAGAGGTAGGGAGGGAAGGAGGAAGGGCTCGCA
GTGTGCGATGGGTAGATGGCCGGCTTTGGGAGGATAGCGTCAGAGGAAGG
GAATGGAGAAAAAGCATGTCTCGGGCAATAAAACCAGCAGACGAGCGGAC
GAGCAATAGGAGACAGAATGTCGAATCGCTGCTGTATCATTCGGAAAACG
CAAGCCGCTGTACTGTGTGACGAAGGAAGGACCTGGGCGGAAAGACGGAC
AGGCTGGGAGCACGAGTAAGGTGGGGGAACCCCCCGCTCCCGAAGGGGGG
GATCCGGGAAGAGGGAGAGGCCCGTTTCTTGGCCCTGCTTGAGGGGCAAG
CCGGTCAGTGGAGAAAGCCTGAAAAATTGGCGCGCGTCAAGCTGAGAAAT
GATGGAAAATGTATGGTAGAGAGGCGACCTGGACGGAAAGGCACGTGAAT
CGAGAGATGCAGAAGGGATCCAGGTTCAAAAAGGAATGGAGCGTGGGGCG
GCATCGAGAAGGGTGATAGCGCCTTTCTTGAAGGGCGGGCCTCGGTGTCC
CGAGCGCGCAGGGAGGGAGGGAAGGAGGGAGGATTGGAGGAAGGGAGGGA
GGTGGTGAACAAGGAATCAAACAATGGGAGCAATAGGAGAGGACGACACG
AGGAGAGTGACAAAAAAATATGCGCGTTGGAAACTTGGAAAGGCGTCAGT
CTCTGGTTTGCTTGCCGTTTTCCCTCCTCCCACGGCACCCGTCCCTCCCT
TCAGGGATGTTTCCCCTCGTTGTCAGCGAGTATGCCAGAGTCTTGATGCC
CTGCCATTCCCTCACTGCCGGTAGAGGTGGGGACGGAGAACGAGAGCCAG
AGCGGTCCCTTTATCTGCGCTCCTCAATCCTGTCCTGACCCCCCGAGAGA
GTGAGCTCCATTCATGTGGTCACAGCGACAAAGTGATTGATTCATTGTTC
CCTAATCCCTGCATCTGCGCGCAGCCTAGAGCGCCTTTTGTGATCCAGTC
TTTACACTTCCCTCTCTTTGCACACTAAACCCGGGTGTCGGTGGCCCCTC
CCTGCCTCTTTCGGCCCTTCGAGACATGCCTGCCCGGACCCTTTCATCGT
CCGCACACCCCCTTCCCTTGCTTCCCTCCCGCCTCTCAAGAACGACCACT
TTCCCCCCGTAACTCGATGGCTCTCCCAAGCACCCTCAAGAAGCTGCTCG
TTTGCGGGTGGGATTGCCCTCTTTCACGGACCTGGGGCCGTCCGAGCTGC
ATTTTTTTCATGTACAGGACGGGTTATATATGTGTATGCACAAGTTCGGA
ATAAACATCACTCATGGAGTAAT back to topprotein sequence of rna8760 >rna8760-protein ID=rna8760-protein|Name=rna8760|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFE
STRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAAS
YTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALP
VVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVL
VYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASE
KIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSEL
ARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDR
PPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPAS
LASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWF
VLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED back to topmRNA from alignment at KK037250.1:98728..101526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8760 ID=rna8760|Name=rna8760|organism=Nannochloropsis gaditana|type=mRNA|length=2799bp|location=Sequence derived from alignment at KK037250.1:98728..101526- (Nannochloropsis gaditana)
ACATTAGCGGGCGTCAGAGGCGTTACCGAGGTTGCCAGAGGCTGTCGCTG
AAGCGGCTTGGGGCAGAAAAAGAGACCCCGGACACTCGACCACCCACGTC
GCATTCCATTTTGAGGAAGGAGGGAGGGTGTGGGTGGACAACACATGGAA
TGGTAGCTTTATTGTGGGTTTCACTTGAATTTTGGTCCCTGAAGCCTGCT
AATTAATTGCGCTGCTAGCTCTGCAGCAGCCTTCCTCAAGCCAAGCCGAC
CTTGAAGGCAATTTCGCTTACCTTTCCATCCCACCTATTCTTTCAGGCCC
CAGTGAACCACACGGTTTTAGCCTACCTTTAGAAAAGCATTACTTTTTTT
CATAAGTCAGCGTCGAGTGGTGAAAAGTCTTTCTTAGGATTGGTCATATT
CTTAAAGCAGCTCTCCCGAATTTTGAACTCAGACTTTGACTTTCCCGCAT
ACAGGCAGGTGCATGTCCGACCATGCCCTCCATTCTGACCCATCGCAGAG
GTCTCAATGATCGATTCCAGTCGTCCGTAGCTGATGAAAATACGCCTGCC
ATGGCCACTGGGCGTTCAAGACTTCCTTCTCCCGAGGCCCCGAGCAGGAA
GATATGTCGCGTCTGCTTCGAGTCCACACGGCCGGAAACTCTCATCTCTC
CCTGTCGGTGGGTCACATTGGAACTAATAGATGGCCGCGGGTTCGAACAT
TGAAATTTTATCAGAAAGCGTGTTGCGGTCCAAGCCCTGCCTTACCTCCC
TCCCTTTCCCTTCCCCGAACCAGGTGCTCCGGAACCCAATCATACATCCA
TCTTCGCTGCCTCCGTCGCTGGCAACGCAGCGCCATGGCATCCACGAACC
CTCTGCGGGCTTTCACTTGCGGGGTGTGCGCTGCCAGCTACACAGACTTG
TATTCTCTTGTCCACCCCCCCGTGACCCGAAGGGCTGTGCCTGGAGGCGC
CGCGAGCATGCCTCAGGGCCAGGGGCCAGCGGACGCGGCGGCACGAGGGA
GGGCAGGAGCACAGGAGGCGCCGTGGGGGGCATTGCCGGTGGTGGAGGCG
CGCATGGGTCTTAGCGAGGTGGTGCACAAGGCCGTCTTGGGGGCCTCTGT
GGCCCTGGAGTCCGCCGCCTCCCCCTCCTGGCTCCTGAAGCTCCTCATCC
TCCTCGCCCTCTCCTGCCTCGTCCCCTGCTTCGTCCTTGTCTACTGGGCC
GTCCTCGCTTTCTCCTACCTGCCCTCCCCCTTCCTCCTCCCCCCCGACCA
CCCCCTGGAGCATCCCCCCCACCCCGCCCGCCCCCGCCCGGCCCATCCTC
GCGCCCTGACCCCGGGCAGCTTCCTGCTCGCCAGCGAGAAGATCGGATCG
GGCTCCCTCTTCCACCGGTCTTTGATCCTCCTCCTCGAGCACGGTCCGCA
GGGTTCGCGCGGGCTGGTGGTGAACAAGCGCCTGAGGGACACGGCCGTGG
GCGGGCGGCTGGGGCGACGGCTCTCTCTGAGCGAGCTGGCGAGGCCTGGG
GGGAGGGGTCGGCGCAGTTCTCTGGCAAGGGAGGGCGACGTTGGGGAGAT
GGCAGCTCTCGCCGGGCGCCTCCCGCCCTGGGACCTCCTTTGCGGGGGAC
CCGTCCAGCCCCATGTCCTCCTCGTCCTCCACGATCGCCCACCGGGAGGG
GAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGCGAGGGAGGTCGGGGTGGG
CACGGGCGTCTATGTGGTGGAGGAGAGCGGGCGGGCGCTGGAAGCCTTGG
AGAGGGCCTCTGTCCCCTCGGGCGTCGCCCCTGCCTCCTTGGCCTCCCCA
CGCGCCTCCGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGCAGGGGGAGG
GGGGCGAGGGCGGGCGAAAGCCTTCTTTGGTTACGCGGGGTGGGGCCCGG
GGCAGCTTCTGGAGGAGGTGAAGCGTGGAGAGTGGTTCGTGCTGGGGATG
GACGCTGAGATGACGTCCGAGCTGGTGTTGGGCTTGGCGCTGGAGGAGGA
CGGGGAGGAGGGGGAGGGAGGGGGAGGGGTACAGGTATGGGAAGATCTGA
TGACTGCGCTGGTGCGACGGCAGGAGGATTGACGGGAGGGAAGGAGGACC
GGAGGGAGGGAGAGAGGGGGCAGGGAACGAAAAGAGGGAAGGAACAACTT
CTCTCCAGTCTGTCGCATGTAATTACTCCATGAGTGATGTTTATTCCGAA
CTTGTGCATACACATATATAACCCGTCCTGTACATGAAAAAAATGCAGCT
CGGACGGCCCCAGGTCCGTGAAAGAGGGCAATCCCACCCGCAAACGAGCA
GCTTCTTGAGGGTGCTTGGGAGAGCCATCGAGTTACGGGGGGAAAGTGGT
CGTTCTTGAGAGGCGGGAGGGAAGCAAGGGAAGGGGGTGTGCGGACGATG
AAAGGGTCCGGGCAGGCATGTCTCGAAGGGCCGAAAGAGGCAGGGAGGGG
CCACCGACACCCGGGTTTAGTGTGCAAAGAGAGGGAAGTGTAAAGACTGG
ATCACAAAAGGCGCTCTAGGCTGCGCGCAGATGCAGGGATTAGGGAACAA
TGAATCAATCACTTTGTCGCTGTGACCACATGAATGGAGCTCACTCTCTC
GGGGGGTCAGGACAGGATTGAGGAGCGCAGATAAAGGGACCGCTCTGGCT
CTCGTTCTCCGTCCCCACCTCTACCGGCAGTGAGGGAATGGCAGGGCATC
AAGACTCTGGCATACTCGCTGACAACGAGGGGAAACATCCCTGAAGGGAG
GGACGGGTGCCGTGGGAGGAGGGAAAACGGCAAGCAAACCAGAGACTGA back to topCoding sequence (CDS) from alignment at KK037250.1:98728..101526- >rna8760 ID=rna8760|Name=rna8760|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at KK037250.1:98728..101526- (Nannochloropsis gaditana)
GTGCTCCGGAACCCAATCATACATCCATCTTCGCTGCCTCCGTCGCTGGC
AACGCAGCGCCATGGCATCCACGAACCCTCTGCGGGCTTTCACTTGCGGG
GTGTGCGCTGCCAGCTACACAGACTTGTATTCTCTTGTCCACCCCCCCGT
GACCCGAAGGGCTGTGCCTGGAGGCGCCGCGAGCATGCCTCAGGGCCAGG
GGCCAGCGGACGCGGCGGCACGAGGGAGGGCAGGAGCACAGGAGGCGCCG
TGGGGGGCATTGCCGGTGGTGGAGGCGCGCATGGGTCTTAGCGAGGTGGT
GCACAAGGCCGTCTTGGGGGCCTCTGTGGCCCTGGAGTCCGCCGCCTCCC
CCTCCTGGCTCCTGAAGCTCCTCATCCTCCTCGCCCTCTCCTGCCTCGTC
CCCTGCTTCGTCCTTGTCTACTGGGCCGTCCTCGCTTTCTCCTACCTGCC
CTCCCCCTTCCTCCTCCCCCCCGACCACCCCCTGGAGCATCCCCCCCACC
CCGCCCGCCCCCGCCCGGCCCATCCTCGCGCCCTGACCCCGGGCAGCTTC
CTGCTCGCCAGCGAGAAGATCGGATCGGGCTCCCTCTTCCACCGGTCTTT
GATCCTCCTCCTCGAGCACGGTCCGCAGGGTTCGCGCGGGCTGGTGGTGA
ACAAGCGCCTGAGGGACACGGCCGTGGGCGGGCGGCTGGGGCGACGGCTC
TCTCTGAGCGAGCTGGCGAGGCCTGGGGGGAGGGGTCGGCGCAGTTCTCT
GGCAAGGGAGGGCGACGTTGGGGAGATGGCAGCTCTCGCCGGGCGCCTCC
CGCCCTGGGACCTCCTTTGCGGGGGACCCGTCCAGCCCCATGTCCTCCTC
GTCCTCCACGATCGCCCACCGGGAGGGGAGGGCGGGAGGGAGGGCGGGAG
GGAGGGCGCGAGGGAGGTCGGGGTGGGCACGGGCGTCTATGTGGTGGAGG
AGAGCGGGCGGGCGCTGGAAGCCTTGGAGAGGGCCTCTGTCCCCTCGGGC
GTCGCCCCTGCCTCCTTGGCCTCCCCACGCGCCTCCGAGGAAGAGGAGGA
GGAGGAGGAGGAGGAGGCAGGGGGAGGGGGGCGAGGGCGGGCGAAAGCCT
TCTTTGGTTACGCGGGGTGGGGCCCGGGGCAGCTTCTGGAGGAGGTGAAG
CGTGGAGAGTGGTTCGTGCTGGGGATGGACGCTGAGATGACGTCCGAGCT
GGTGTTGGGCTTGGCGCTGGAGGAGGACGGGGAGGAGGGGGAGGGAGGGG
GAGGGGTACAGGTATGGGAAGATCTGATGACTGCGCTGGTGCGACGGCAG
GAGGATTGAATGCCCTCCATTCTGACCCATCGCAGAGGTCTCAATGATCG
ATTCCAGTCGTCCGTAGCTGATGAAAATACGCCTGCCATGGCCACTGGGC
GTTCAAGACTTCCTTCTCCCGAGGCCCCGAGCAGGAAGATATGTCGCGTC
TGCTTCGAGTCCACACGGCCGGAAACTCTCATCTCTCCCTGTCGGTGCTC
CGGAACCCAATCATACATCCATCTTCGCTGCCTCCGTCGCTGGCAACGCA
GCGCCATGGCATCCACGAACCCTCTGCGGGCTTTCACTTGCGGGGTGTGC
GCTGCCAGCTACACAGACTTGTATTCTCTTGTCCACCCCCCCGTGACCCG
AAGGGCTGTGCCTGGAGGCGCCGCGAGCATGCCTCAGGGCCAGGGGCCAG
CGGACGCGGCGGCACGAGGGAGGGCAGGAGCACAGGAGGCGCCGTGGGGG
GCATTGCCGGTGGTGGAGGCGCGCATGGGTCTTAGCGAGGTGGTGCACAA
GGCCGTCTTGGGGGCCTCTGTGGCCCTGGAGTCCGCCGCCTCCCCCTCCT
GGCTCCTGAAGCTCCTCATCCTCCTCGCCCTCTCCTGCCTCGTCCCCTGC
TTCGTCCTTGTCTACTGGGCCGTCCTCGCTTTCTCCTACCTGCCCTCCCC
CTTCCTCCTCCCCCCCGACCACCCCCTGGAGCATCCCCCCCACCCCGCCC
GCCCCCGCCCGGCCCATCCTCGCGCCCTGACCCCGGGCAGCTTCCTGCTC
GCCAGCGAGAAGATCGGATCGGGCTCCCTCTTCCACCGGTCTTTGATCCT
CCTCCTCGAGCACGGTCCGCAGGGTTCGCGCGGGCTGGTGGTGAACAAGC
GCCTGAGGGACACGGCCGTGGGCGGGCGGCTGGGGCGACGGCTCTCTCTG
AGCGAGCTGGCGAGGCCTGGGGGGAGGGGTCGGCGCAGTTCTCTGGCAAG
GGAGGGCGACGTTGGGGAGATGGCAGCTCTCGCCGGGCGCCTCCCGCCCT
GGGACCTCCTTTGCGGGGGACCCGTCCAGCCCCATGTCCTCCTCGTCCTC
CACGATCGCCCACCGGGAGGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGG
CGCGAGGGAGGTCGGGGTGGGCACGGGCGTCTATGTGGTGGAGGAGAGCG
GGCGGGCGCTGGAAGCCTTGGAGAGGGCCTCTGTCCCCTCGGGCGTCGCC
CCTGCCTCCTTGGCCTCCCCACGCGCCTCCGAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGCAGGGGGAGGGGGGCGAGGGCGGGCGAAAGCCTTCTTTG
GTTACGCGGGGTGGGGCCCGGGGCAGCTTCTGGAGGAGGTGAAGCGTGGA
GAGTGGTTCGTGCTGGGGATGGACGCTGAGATGACGTCCGAGCTGGTGTT
GGGCTTGGCGCTGGAGGAGGACGGGGAGGAGGGGGAGGGAGGGGGAGGGG
TACAGGTATGGGAAGATCTGATGACTGCGCTGGTGCGACGGCAGGAGGAT
TGAATGCCCTCCATTCTGACCCATCGCAGAGGTCTCAATGATCGATTCCA
GTCGTCCGTAGCTGATGAAAATACGCCTGCCATGGCCACTGGGCGTTCAA
GACTTCCTTCTCCCGAGGCCCCGAGCAGGAAGATATGTCGCGTCTGCTTC
GAGTCCACACGGCCGGAAACTCTCATCTCTCCCTGTCG back to top
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