EWM21943.1, cds8730 (CDS) Nannochloropsis gaditana

Overview
NameEWM21943.1
Unique Namecds8730
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:100870..101054 -
Alignment locationKK037250.1:99445..100753 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21943.1
Productssm4 like ring finger protein
Orig transcript idgnl|cribi|Naga_100157g13.46.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:100870..101054 -
KK037250.1supercontigKK037250.1:99445..100753 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003774UPF0301
IPR011016Znf_RING-CH
Homology
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|585102295|gb|EWM21943.1| (ssm4 like ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query:    1 MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED 497
            MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED
Sbjct:    1 MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED 497          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1129190894|gb|OLP96016.1| (E3 ubiquitin-protein ligase MARCH1 [Symbiodinium microadriaticum])

HSP 1 Score: 73.559 bits (179), Expect = 2.026e-10
Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 0
Query:    9 RGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--TNP------LRAFTCGVCAASYTDLYSLVHPPV 112
            RG N      +A+ +    A         E    ++CR CFE    + LISPCRCSG Q Y+HL+CLR WQR+ + S  T+P       R   C VC   +T      HPP 
Sbjct:  149 RGTNAAQACHLAESSKAVTAASPPAQNEEEGEEDRLCRFCFEGDEEDELISPCRCSGGQKYVHLKCLRMWQRAVLVSQPTHPDLYDHDTRQRICNVCKTEFT-----CHPPT 255          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1129181096|gb|OLP88515.1| (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Symbiodinium microadriaticum])

HSP 1 Score: 72.4034 bits (176), Expect = 1.218e-9
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0
Query:   26 AMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--TNP------LRAFTCGVCAASYT 102
            A  T  + + + E     ICR CF       LISPC+CSG Q Y+HL+CLR+WQR  + +  T+P      LR  TC VC + +T
Sbjct:   41 ATGTFSNTVMAVEDEEEIICRYCFAGEEDGELISPCKCSGGQKYVHLKCLRQWQRMVLVTQPTHPAFYDRDLRHQTCNVCKSEFT 125          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1173947535|gb|OQR95797.1| (hypothetical protein THRCLA_07563 [Thraustotheca clavata])

HSP 1 Score: 70.8626 bits (172), Expect = 2.102e-9
Identity = 47/131 (35.88%), Postives = 57/131 (43.51%), Query Frame = 0
Query:   38 EAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSE 160
            E+    +CR CF       LISPC+CSG Q Y+HL CLRRWQR  + S        ++  R   C VC A YT       PP      P  A  M    GP  AA   +     A  G   ++EA   L E
Sbjct:    2 ESDEEVLCRYCFGDESDGPLISPCKCSGGQKYVHLDCLRRWQRMVLVSQPTHPAFYSDDKRHHVCNVCLAKYT------CPP------PSRAELMASFTGPEIAALIEKDRLIAASQGFSEMLEADRHLDE 120          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|551548833|ref|XP_005762059.1| (hypothetical protein EMIHUDRAFT_432925 [Emiliania huxleyi CCMP1516] >gi|485610937|gb|EOD09630.1| hypothetical protein EMIHUDRAFT_432925 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 70.8626 bits (172), Expect = 2.252e-9
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0
Query:   44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
            +CR CFE      L+SPC C G Q ++HL CLRRWQR  + S        T+  R  TCGVCAA +T
Sbjct:   52 LCRYCFEGESEGELLSPCDCKGGQKWVHLHCLRRWQRMVLVSQPTHPAFYTSDARHHTCGVCAAPFT 118          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|145353577|ref|XP_001421086.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581322|gb|ABO99379.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 67.781 bits (164), Expect = 3.456e-9
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   22 ENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYT 102
            E +P++A       S +  S   CR CF  +   TLI PC C+G+Q+Y+H RCLRRWQR +   T   R   C VC A+YT
Sbjct:   47 ETSPSVA-------SAKKASEGTCRFCFTGSECGTLIEPCACAGSQAYVHKRCLRRWQRVSY-QTRGARETQCRVCHANYT 119          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|552820163|ref|XP_005845548.1| (hypothetical protein CHLNCDRAFT_136697 [Chlorella variabilis] >gi|307105196|gb|EFN53446.1| hypothetical protein CHLNCDRAFT_136697 [Chlorella variabilis])

HSP 1 Score: 69.3218 bits (168), Expect = 5.861e-9
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   45 CRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMA-STNPLRAFTCGVCAASYTDLYSLVHPPVTR 114
            CRVC+E      L+SPC+C+GTQ ++HL+CLRRWQ +         RAF C VC A ++     V PP  R
Sbjct:   26 CRVCWEHESEANLLSPCKCAGTQKHVHLKCLRRWQENVQKRDAMDERAFRCSVCRAFFS-----VPPPQAR 91          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1173930446|gb|OQR83286.1| (hypothetical protein ACHHYP_14913 [Achlya hypogyna])

HSP 1 Score: 68.1662 bits (165), Expect = 1.573e-8
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 0
Query:   44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
            ICR CF       LISPC+C+G Q ++HL CLRRWQR  + S        T+  R   C VC A YT
Sbjct:    9 ICRYCFGDEADGPLISPCKCAGGQKFVHLDCLRRWQRMVLVSQPTHPAFYTDDKRHHICNVCLARYT 75          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|813185517|ref|XP_012206930.1| (hypothetical protein SPRG_11359 [Saprolegnia parasitica CBS 223.65] >gi|641528163|gb|KDO22407.1| hypothetical protein SPRG_11359 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 67.781 bits (164), Expect = 1.661e-8
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 0
Query:   44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
            +CR CF       LISPC+CSG Q ++HL CLRRWQR  + S        T+  R   C VC A YT
Sbjct:   10 LCRYCFGDEADGPLISPCKCSGGQKFVHLDCLRRWQRMVLVSQPTHPAFYTDDKRHHICNVCLARYT 76          
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|294463126|gb|ADE77100.1| (unknown [Picea sitchensis])

HSP 1 Score: 67.0106 bits (162), Expect = 2.002e-8
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   44 ICRVCFEST-----------RPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVT 113
            ICR+C E               E LISPC CSGTQ+++H++CLRRWQ++ M+ST P  + T  +     T  +SLV PP T
Sbjct:   10 ICRICLEPAPISLSDDADLLAEERLISPCACSGTQAFVHVKCLRRWQKAVMSSTRPGASHTAALICPVCTQKFSLV-PPQT 89          
The following BLAST results are available for this feature:
BLAST of EWM21943.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102295|gb|EWM21943.1|0.000e+0100.00ssm4 like ring finger protein [Nannochloropsis gad... [more]
gi|1129190894|gb|OLP96016.1|2.026e-1036.61E3 ubiquitin-protein ligase MARCH1 [Symbiodinium m... [more]
gi|1129181096|gb|OLP88515.1|1.218e-941.18Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
gi|1173947535|gb|OQR95797.1|2.102e-935.88hypothetical protein THRCLA_07563 [Thraustotheca c... [more]
gi|551548833|ref|XP_005762059.1|2.252e-947.76hypothetical protein EMIHUDRAFT_432925 [Emiliania ... [more]
gi|145353577|ref|XP_001421086.1|3.456e-943.21predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|552820163|ref|XP_005845548.1|5.861e-945.07hypothetical protein CHLNCDRAFT_136697 [Chlorella ... [more]
gi|1173930446|gb|OQR83286.1|1.573e-846.27hypothetical protein ACHHYP_14913 [Achlya hypogyna... [more]
gi|813185517|ref|XP_012206930.1|1.661e-846.27hypothetical protein SPRG_11359 [Saprolegnia paras... [more]
gi|294463126|gb|ADE77100.1|2.002e-843.21unknown [Picea sitchensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8760rna8760Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications