EWM21943.1, cds8730 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|585102295|gb|EWM21943.1| (ssm4 like ring finger protein [Nannochloropsis gaditana]) HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0 Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query: 1 MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED 497
MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED
Sbjct: 1 MPSILTHRRGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEHPPHPARPRPAHPRALTPGSFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGRRSSLAREGDVGEMAALAGRLPPWDLLCGGPVQPHVLLVLHDRPPGGEGGREGGREGAREVGVGTGVYVVEESGRALEALERASVPSGVAPASLASPRASEEEEEEEEEEAGGGGRGRAKAFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEEDGEEGEGGGGVQVWEDLMTALVRRQED 497
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1129190894|gb|OLP96016.1| (E3 ubiquitin-protein ligase MARCH1 [Symbiodinium microadriaticum]) HSP 1 Score: 73.559 bits (179), Expect = 2.026e-10 Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 0
Query: 9 RGLNDRFQSSVADENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--TNP------LRAFTCGVCAASYTDLYSLVHPPV 112
RG N +A+ + A E ++CR CFE + LISPCRCSG Q Y+HL+CLR WQR+ + S T+P R C VC +T HPP
Sbjct: 149 RGTNAAQACHLAESSKAVTAASPPAQNEEEGEEDRLCRFCFEGDEEDELISPCRCSGGQKYVHLKCLRMWQRAVLVSQPTHPDLYDHDTRQRICNVCKTEFT-----CHPPT 255
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1129181096|gb|OLP88515.1| (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Symbiodinium microadriaticum]) HSP 1 Score: 72.4034 bits (176), Expect = 1.218e-9 Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0
Query: 26 AMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--TNP------LRAFTCGVCAASYT 102
A T + + + E ICR CF LISPC+CSG Q Y+HL+CLR+WQR + + T+P LR TC VC + +T
Sbjct: 41 ATGTFSNTVMAVEDEEEIICRYCFAGEEDGELISPCKCSGGQKYVHLKCLRQWQRMVLVTQPTHPAFYDRDLRHQTCNVCKSEFT 125
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1173947535|gb|OQR95797.1| (hypothetical protein THRCLA_07563 [Thraustotheca clavata]) HSP 1 Score: 70.8626 bits (172), Expect = 2.102e-9 Identity = 47/131 (35.88%), Postives = 57/131 (43.51%), Query Frame = 0
Query: 38 EAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQGPADAAARGRAGAQEAPWGALPVVEARMGLSE 160
E+ +CR CF LISPC+CSG Q Y+HL CLRRWQR + S ++ R C VC A YT PP P A M GP AA + A G ++EA L E
Sbjct: 2 ESDEEVLCRYCFGDESDGPLISPCKCSGGQKYVHLDCLRRWQRMVLVSQPTHPAFYSDDKRHHVCNVCLAKYT------CPP------PSRAELMASFTGPEIAALIEKDRLIAASQGFSEMLEADRHLDE 120
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|551548833|ref|XP_005762059.1| (hypothetical protein EMIHUDRAFT_432925 [Emiliania huxleyi CCMP1516] >gi|485610937|gb|EOD09630.1| hypothetical protein EMIHUDRAFT_432925 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 70.8626 bits (172), Expect = 2.252e-9 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0
Query: 44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
+CR CFE L+SPC C G Q ++HL CLRRWQR + S T+ R TCGVCAA +T
Sbjct: 52 LCRYCFEGESEGELLSPCDCKGGQKWVHLHCLRRWQRMVLVSQPTHPAFYTSDARHHTCGVCAAPFT 118
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|145353577|ref|XP_001421086.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581322|gb|ABO99379.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 67.781 bits (164), Expect = 3.456e-9 Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0
Query: 22 ENTPAMATGRSRLPSPEAPSRKICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYT 102
E +P++A S + S CR CF + TLI PC C+G+Q+Y+H RCLRRWQR + T R C VC A+YT
Sbjct: 47 ETSPSVA-------SAKKASEGTCRFCFTGSECGTLIEPCACAGSQAYVHKRCLRRWQRVSY-QTRGARETQCRVCHANYT 119
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|552820163|ref|XP_005845548.1| (hypothetical protein CHLNCDRAFT_136697 [Chlorella variabilis] >gi|307105196|gb|EFN53446.1| hypothetical protein CHLNCDRAFT_136697 [Chlorella variabilis]) HSP 1 Score: 69.3218 bits (168), Expect = 5.861e-9 Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 0
Query: 45 CRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMA-STNPLRAFTCGVCAASYTDLYSLVHPPVTR 114
CRVC+E L+SPC+C+GTQ ++HL+CLRRWQ + RAF C VC A ++ V PP R
Sbjct: 26 CRVCWEHESEANLLSPCKCAGTQKHVHLKCLRRWQENVQKRDAMDERAFRCSVCRAFFS-----VPPPQAR 91
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|1173930446|gb|OQR83286.1| (hypothetical protein ACHHYP_14913 [Achlya hypogyna]) HSP 1 Score: 68.1662 bits (165), Expect = 1.573e-8 Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 0
Query: 44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
ICR CF LISPC+C+G Q ++HL CLRRWQR + S T+ R C VC A YT
Sbjct: 9 ICRYCFGDEADGPLISPCKCAGGQKFVHLDCLRRWQRMVLVSQPTHPAFYTDDKRHHICNVCLARYT 75
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|813185517|ref|XP_012206930.1| (hypothetical protein SPRG_11359 [Saprolegnia parasitica CBS 223.65] >gi|641528163|gb|KDO22407.1| hypothetical protein SPRG_11359 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 67.781 bits (164), Expect = 1.661e-8 Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 0
Query: 44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMAS--------TNPLRAFTCGVCAASYT 102
+CR CF LISPC+CSG Q ++HL CLRRWQR + S T+ R C VC A YT
Sbjct: 10 LCRYCFGDEADGPLISPCKCSGGQKFVHLDCLRRWQRMVLVSQPTHPAFYTDDKRHHICNVCLARYT 76
BLAST of EWM21943.1 vs. NCBI_GenBank
Match: gi|294463126|gb|ADE77100.1| (unknown [Picea sitchensis]) HSP 1 Score: 67.0106 bits (162), Expect = 2.002e-8 Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0
Query: 44 ICRVCFEST-----------RPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVT 113
ICR+C E E LISPC CSGTQ+++H++CLRRWQ++ M+ST P + T + T +SLV PP T
Sbjct: 10 ICRICLEPAPISLSDDADLLAEERLISPCACSGTQAFVHVKCLRRWQKAVMSSTRPGASHTAALICPVCTQKFSLV-PPQT 89 The following BLAST results are available for this feature:
BLAST of EWM21943.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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