rna8757, rna8757 (mRNA) Nannochloropsis gaditana

Overview
Namerna8757
Unique Namerna8757
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1278
Alignment locationKK037250.1:87521..90157 -

Link to JBrowse

Properties
Property NameValue
Productphosphoribulokinase
Orig transcript idgnl|cribi|Naga_100157g10.57.mrna
Orig protein idgnl|cribi|Naga_100157g10.57
GenePRK
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:87521..90157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PRKgene8489Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21954.1cds8727Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8757rna8757-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8757 ID=rna8757|Name=rna8757|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp
CGTTTTTTAGCTGCCTCCCCCCCAAAAAAACTTCCTCAGGGACTCAATGC
ATGTTATAACGGACACGAATAGGGCCCTTTCATTTATGGCTACAGCTCCA
TCTTGGCGCTCAGGGACTTTGCCATGAGCTCAACCGTCGCAGACGGGGGG
GGGCAAGGCGCCAGCAAGGACTCCCCCTTTCACAACACGTCCGTAGCAGG
CCGCGCAACCTCACAGATGTTGGAAAGACGAGGAGAGACGGATGCTGTGG
AGGAGCGGGGCCCCATGGAAGACCCTCTCTGCATGACCACGAGCCTTGGG
AATACAAGGGAAGGCTTCCTTGGCTTTGCCTCGGGCCTGGTGGCCGGGAT
CATCGGAGTCTTGACGGGCTACCCCTTGGACACCCTCAAGGTGAAAATGC
AGGTGTACGGCTCAGGGTCTCGCGTGGCCCTTCTGGACGAAAATACCGGG
CGGAACCCCGTGCGGATCGTGCGACAGCTTTTTCGGGGTGTCTTGCCGCC
CTTGCTCAGCACCGGCTTAGTTCAAACTTTAAATTTTGGAGTGTACGACA
ACACGTTGCGCTACCTCCGAGTGGGACGGGAGGAGCAAAAACGACAGGCA
GGAAGGCAGAGCCGAGGGCTGGAGGAACGGGAGGAGGGTTCGGCGTCCTA
TCACGGCCCCAACGTCCTCCCTGACTTTTTCCTTGCGGGCGCGGTGGGGG
GGGCAGCGATCAGCATCATCACCTGCCCGGCCTCCCTGATTAAAATACAG
GTGCAAACGGCCAGCAGCAGTAGCGTCACCTACTGGACGGTGTTGGCGGG
CATGCGAAGGAAGGGTCTTGTGGCGGGGTACTACCGGGCCTTCGTTCCCG
ACGTGCTCAATCAAATGGTGGGCCGTGGCGTCTACATGTGCACCTACGAG
GCCTTGAAGCGTCTCCTCCACCCTTCCCCCCCGCCCACCCCGGGAACCGT
CCACGAGCCACCCTCCCGGCTCCACCACCAGGCTCAGCCTCTCTACCAAC
GTATCTTGGCCGGGGCGCTGGCGGGTGTCTGTGGCTGGCTGTGCATCTAC
CCGCTGGACGTGGTCAAATCGCGGCTGCAGGCTGACGCCTTGGCGCCTGG
GGCCAACCGGTACACCACCATGACAGACTGCTTTCGACAGAGCTACCGCG
CCGGCGGCCTGCGCTCGCTCTATTCGGGACTGGGCTACACCTTGTTGCGG
GCCGTGCCCGTGGCCAGTGTAATTTTACCCTGCTATGACGCCACCTATCA
TGTGCTGGCACGCCATTTAGATGAGTGA
back to top

protein sequence of rna8757

>rna8757-protein ID=rna8757-protein|Name=rna8757|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MVKTAAVSLLALAGLASAFVPPTTNFRSANRWTIKAKDTSFTRNLMMKLG
ADDKVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNT
LVSDTTTVICLDDYHANDRSGRKVTGRTALEAAEQNFDLMYEQLKALKEG
KTVAKPIYNHVNGTLDRPEEVVPTPIVIVEGLHPWYDARVKDLLDYTIYL
DISDEIKRAWKIQRDMAERGWTLEQVEAEIEKRKPDFNKFVGPQKEVADS
VIQVLPTELTNDPEGKILRVRLIQKETGDYEPVYLFDQGSTVSWIPCGTK
LTCSYPGIKLGSGPDRWFNNAVNVVEMDGQFDKLEELAYVEKHLGNTASK
YDGEITAQMLKNEGPRDPERLRPLPDHRLAQDPRGLREAEREEGRRLRQG
PRGRVSRRQRSEGWLAAENRVGFEVWRS
back to top

mRNA from alignment at KK037250.1:87521..90157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8757 ID=rna8757|Name=rna8757|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp|location=Sequence derived from alignment at KK037250.1:87521..90157- (Nannochloropsis gaditana)
GTTGCGTAACACTTCTTCTGATGAGGTGCATTGGATGGTGTCGTACGTGT
TTTCGCCTCCTCGTCCACACCATCCGACTGTTTGTACCCATGATGACGCG
ATCACACCGTCTTCACGGGTTGGGACACTGTCGTCTTGCTGTTTGTCAAC
GTGCCACGCTACCTCGCCTTCGACAAAGATCTCCATGCCATCCGCGGCCG
GGAATACCTGGATTTTGGCATAGCTCCCACATCATGGGGAAATTCGGCAT
GCCACACCGCTCATTTAACTCCTGAGCGCTGCAACATGTGCAAGCCAAGC
GCCAAGACGCCCGAGCCACTTGTTCAGTTCTCAAGAGGGGCCGGGAGGAT
CGTCGCGGGCTTCGATGAAAGCGTCTCGCTTCAGTTTAAGCCCCAGCGTC
ATTCATAGTCACGTTGTTTTTCTCACAAAATCTCATTTTTCCTTGCAGAA
GTATGGTCAAGACTGCCGCCGTAAGCCTCCTGGCCCTAGCCGGGCTCGCA
TCTGCCTTCGTGCCCCCCACCACGAATTTTCGCAGCGCTAACAGATGGAC
GATTAAGGCCAAAGACACGTCCTTCACCCGCAACCTCATGATGAAGCTGG
GCGCGGACGACAAGGTCATTTTGATCGGCGTGGCCGCGGATTCCGGCTGT
GGAAAGTCGACGTTCATGCGGCGGCTGACCAACATCTTTGGTGGGAGCAA
CGTGGGCCCCCTGGGGGGCGGTTTCGACAACGGGGGATGGGAGACGAACA
CCCTGGTCTCGGACACGACCACCGTCATCTGCTTGGACGACTACCATGCC
AACGACCGCTCTGGGCGGAAAGTGACGGGCCGCACCGCCTTGGAAGCTGC
CGAGCAGAATTTTGACCTCATGTACGAGCAGCTCAAGGCCCTGAAGGAGG
GCAAAACTGTGGCCAAGCCCATCTACAACCACGTGAACGGGACCTTGGAC
CGGCCCGAGGAGGTGGTGCCCACCCCCATTGTGATCGTGGAGGGCTTGCA
CCCCTGGTACGACGCCCGCGTCAAGGACCTGCTCGACTACACTATCTACC
TGGACATATCGGACGAGATCAAGCGCGCATGGAAGATCCAGCGGGACATG
GCCGAGCGCGGATGGACCTTGGAGCAGGTGGAGGCAGAGATTGAAAAGCG
TAAGCCGGACTTCAATAAATTCGTGGGGCCCCAGAAGGAGGTAGCCGACT
CGGTGATCCAAGTCTTGCCCACAGAGCTGACCAACGACCCCGAGGGGAAG
ATCCTCCGCGTCCGGCTCATCCAGAAGGAGACGGGGGACTACGAACCCGT
CTACCTGTTCGACCAGGGCTCTACGGTCTCCTGGATTCCCTGCGGCACGA
AGCTGACATGCTCCTACCCCGGCATCAAGCTGGGCTCGGGACCGGACCGC
TGGTTCAACAACGCGGTGAACGTGGTGGAGATGGACGGCCAGTTTGACAA
GCTGGAAGAGCTTGCCTACGTGGAGAAGCACCTGGGGAACACGGCCAGCA
AGTACGACGGGGAGATCACGGCCCAGATGCTCAAGAACGAGGGCCCCCGG
GACCCTGAACGGCTCAGGCCTCTTCCAGACCATCGTCTCGCTCAAGATCC
GCGAGGTCTACGAGAAGCTGAGCGGGAAGAAGGTAGACGCCTCCGTCAAG
GCCCCCGTGGCCGCGTAAGCCGGCGGCAAAGGAGCGAGGGCTGGTTGGCT
GCTGAAAACAGGGTAGGCTTTGAGGTGTGGAGATCGTAACGGCTCCCACC
GGACCTCAGCAGCATCCCTTGAACAAACGGCGAGCCTCACACGCCGACTG
CTGCATGTTTTGTGTGTTCTGTGCTTTTCGTGTCCGGAGCCATCGCGTCG
TCTGCGCCGGGTGCCGGGCCCAGAGAGCGGGGGGAGGGCCAGGGAGGCAT
TCTGTTGTTTTGGGTGGTGTTTGGGGGATAGGAGACTGACCTGTCGGCCC
CTTTTTGACGTATCGCGAATTTCGATGAAATAATCGGCTCCATTCTCCAT
TAAATTGAAGCATGCATGGATGATGATCGAGGTGGGAGGGGCGCCTATAA
CACCGCCACCTGTGTCCCTGGGCGAGCTCTTCGGGTTCCTTTACTTTTCG
ACTCCGAAAACGCTTTTCTGAAACAAAGTCGCCAAGGTTACTCGCTGTTG
CCCATACCCCTTCCATTCGCGAGTCTAGAACTCCTTGCAGATCCCTGGAT
AAGAGATTCAAAAACGTTGCGGCCGAGGAGTCGATGGAATGCCTCCCTCC
TTGAACCCGCCCGGCCTGCGCGTGCTCATGGCTCGTGACAGACACCCATG
TCGACCTCGCCTGCGGGAGAGAAACAGAGCGTCCGAAAACAGCGCAAAGG
GAGTCCGAGAACTGCGCAAAGAAAGTCCGAGAGCAGCGCGCAGCAAAAGC
GAGGGTCCTTGTGGCCTGATTTCATCGTGGAAGATGTTACGAATCACGAC
TTATGCGCACCACTTCACTTCATCGAAGCGCGATCCTGTTTATACTTTCT
ACTGCACAAAATTGTGTGTCGATCCCCTCCTTCTCCCCCTCTCCTCCTCT
CCCTCGCCTCACTCATCTAAATGGCGTGCCAGCACATGATAGGTGGCGTC
ATAGCAGGGTAAAATTACACTGGCCACGGGCACGGCC
back to top

Coding sequence (CDS) from alignment at KK037250.1:87521..90157-

>rna8757 ID=rna8757|Name=rna8757|organism=Nannochloropsis gaditana|type=CDS|length=1287bp|location=Sequence derived from alignment at KK037250.1:87521..90157- (Nannochloropsis gaditana)
ATGGTCAAGACTGCCGCCGTAAGCCTCCTGGCCCTAGCCGGGCTCGCATC
TGCCTTCGTGCCCCCCACCACGAATTTTCGCAGCGCTAACAGATGGACGA
TTAAGGCCAAAGACACGTCCTTCACCCGCAACCTCATGATGAAGCTGGGC
GCGGACGACAAGGTCATTTTGATCGGCGTGGCCGCGGATTCCGGCTGTGG
AAAGTCGACGTTCATGCGGCGGCTGACCAACATCTTTGGTGGGAGCAACG
TGGGCCCCCTGGGGGGCGGTTTCGACAACGGGGGATGGGAGACGAACACC
CTGGTCTCGGACACGACCACCGTCATCTGCTTGGACGACTACCATGCCAA
CGACCGCTCTGGGCGGAAAGTGACGGGCCGCACCGCCTTGGAAGCTGCCG
AGCAGAATTTTGACCTCATGTACGAGCAGCTCAAGGCCCTGAAGGAGGGC
AAAACTGTGGCCAAGCCCATCTACAACCACGTGAACGGGACCTTGGACCG
GCCCGAGGAGGTGGTGCCCACCCCCATTGTGATCGTGGAGGGCTTGCACC
CCTGGTACGACGCCCGCGTCAAGGACCTGCTCGACTACACTATCTACCTG
GACATATCGGACGAGATCAAGCGCGCATGGAAGATCCAGCGGGACATGGC
CGAGCGCGGATGGACCTTGGAGCAGGTGGAGGCAGAGATTGAAAAGCGTA
AGCCGGACTTCAATAAATTCGTGGGGCCCCAGAAGGAGGTAGCCGACTCG
GTGATCCAAGTCTTGCCCACAGAGCTGACCAACGACCCCGAGGGGAAGAT
CCTCCGCGTCCGGCTCATCCAGAAGGAGACGGGGGACTACGAACCCGTCT
ACCTGTTCGACCAGGGCTCTACGGTCTCCTGGATTCCCTGCGGCACGAAG
CTGACATGCTCCTACCCCGGCATCAAGCTGGGCTCGGGACCGGACCGCTG
GTTCAACAACGCGGTGAACGTGGTGGAGATGGACGGCCAGTTTGACAAGC
TGGAAGAGCTTGCCTACGTGGAGAAGCACCTGGGGAACACGGCCAGCAAG
TACGACGGGGAGATCACGGCCCAGATGCTCAAGAACGAGGGCCCCCGGGA
CCCTGAACGGCTCAGGCCTCTTCCAGACCATCGTCTCGCTCAAGATCCGC
GAGGTCTACGAGAAGCTGAGCGGGAAGAAGGTAGACGCCTCCGTCAAGGC
CCCCGTGGCCGCGTAAGCCGGCGGCAAAGGAGCGAGGGCTGGTTGGCTGC
TGAAAACAGGGTAGGCTTTGAGGTGTGGAGATCGTAA
back to top
Synonyms
Publications