rna875, rna875 (mRNA) Nannochloropsis gaditana

Overview
Namerna875
Unique Namerna875
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2319
Alignment locationCM002456.1:622006..623335 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g67.325.mrna
Orig protein idgnl|cribi|Naga_100017g67.325
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:622006..623335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g67gene838Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna875rna875-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29827.1cds875Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna875 ID=rna875|Name=rna875|organism=Nannochloropsis gaditana|type=mRNA|length=2319bp
GAGAGATGGGCGAGCGCTTCACGCGGACACTGCAACACATACGTACAGCC
CGTCCAGCATGGAAATGGCCTGCGCAAACCCCGCCAACAAAAAGCGCACG
CTGGCACGCAGTAAAAGCGGCGGCACTCGGACGACGTCGTCCGCATTTTC
ATCTCGCCCTGCCCAGCAGCAGCATTATCGTAGGGTTCGAGCTATACCTT
CAAGCGGACTCTTTCGCAGGAACGCAGACAGGCAACTCGCCGCTCTTCAC
TTTCTCAGCAATATTCCCATGAAAAGTGAGCTGCAAGTTTTGAATATCGT
GCGGCCTCCACATCAAGAAAACTCCCATGGACGCGAAAATTACATGGCTC
TCACCGGAAAGAAGGAAGACAGAGACATGAAACCACATAAAGTTGCCTCC
CGCGCGAATGATAGCAGCACACCTGTACTTGAGAACCACTTTTGTAGAAG
CAGGGATGGCGTTGATAGTACTTCAATTCCTGGCAAGCAGCTCAACGGTC
TGGACGCGTTTGTTGTCTCGGTACCGGAATCAATACGGCATAAATATCAA
CACAGCGCTGCAGTTGTGCGACAATGGGAGCGTCGAGTCAAGAACGCTGG
TATCTTGGACGGAAGGCTTTTCATCTCATCTAGACGGGGATATCCCTTGG
TGGTTGCCTCGGTGGTAGAGTACAAACCGGGCTGCGAGTCCGAGAAGCGG
TGGCGCGCTAGGCAAGTGAACGAGCGTGGTGGCGAAGCATTCCATCGTCC
AGTGCCAGACTGGCGCGGGGTACGTTATGGCGCTTTGCTGCATGCAGAAA
GGGCTGCATGCTCCGCAGAGCGGGATGTCAGGGATGGAGGATATTTAGTG
GCTTGCGGAGGGAAGGACGGCGTCGGGGCCGGGGCAGCCCCAGCCAGCCA
GTCCCCTTTCGGCGCCAGCGGCTCCTCTTATGACCCTGCCTCCCTGGACG
ACCCAGCATTAAGTCATGGACGCACTCGACAACTGAACGTGGGCGGCCCC
GGCCTGGGACCTGTAGTCTTCTCCATTATCCATTTCCGCAAGCCGAAGCA
GCTGAAGGAAGAGCTCAACAAGCAGTTTCGGGAGCGCCATCCCACCCTGC
CTCCCTCTCTCACGTTGTCGAAAATTCGGCGTTTGAAGAAACAGGCGGCG
ATTGCTTGCTATGAGGGATTAGGCGTAGAACTAGGTACACTGGCCTTGGC
GTGCGTTTATTTCGAGAAGCTTTGCTTGCTGTCTCTCGTAACAAAATCCA
ATCGTCGGCTCGCTTTCGCCACCTGCCTGATCCTGTCTTATAAATTTCAA
GAACAGGGTCTGCGGGGGAGCACTGGTAATGGCTGGCAGGAGGAACGAGA
AAGTAAGATTATGTCTGTCAGTGGCAGTTTTGACAGCTTTCGAGACCCTC
ATTTACGACAAAAAAGCCGCAGTAGCATCACAGGCGGCAACAATGCTTGC
AACCTCTCCAGGTTGCTTGAATGGATTGATCGCGAATGGTGTGTGAGCAA
AAAGCAGGTCTTGGAGGCTGAGTTCGGCGTGTACATTAACCTCAAGTTCG
CTTTGCACGTCCCGGCCTGCGAGGTGCAGCATCACTTCGCGCGGCTGTGC
AAGCTCGTCGGAGCTACTCCACGGGACTATTTGGGAGAGGACCGGTTCCG
AGCCTACACAGAGGTAGTGACGGGACATAATCAGCACTCACACCCCCGCC
GCCAGGAAGACGAGGTTGCGGGGACCACGAGGAGGAGGGTAGGGGGTGAA
ACCGGGAGGGAGAAGAACGCGAATGCAAACGATGGCTGTTGGAATACCGT
TGCGGAGAAACGTTATACGTACACCACAAAACCTCAGGAGAGTATTTCGC
CTGGATGCCAAGTACCAAGTCAACGACATGCAGCCAGTAGTGAGCCCCCC
ACGGACCGAGCGCATCAGAAAGATTGGGCAATACAAAACGTAAAATGTAA
CTTCGCAAAAAACCAGCACAAAAGTGAGGACTTGAGAGAGGAATCTGCGT
CGCTTGCTCTAACAGATTTTTCGAGAGGAGAGCACATAAAAAAAGACATG
ATAGGGACTCGAGCAGAAGTGAAAGATGGGCTACCGAGCCGCCGCCGCCC
GTCATGGACTTTGCGGAAATTGCGCCGGTAAAGTTTCCCTCACGGTATCA
GAAAACAACTCTGTACGACCTTGCATATTTGCAGGGCTTAATGCTTTTGA
AGCTTCCCCGGACGTGCATATTTTTACGGGTCCAAAAAGTTACCATAAAC
AGATAAGAAAGGAAAAAGGCAGGACGTGCGCTACCATGGTAAAAGTACCT
AAATAACTTACTTCAAGTG
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protein sequence of rna875

>rna875-protein ID=rna875-protein|Name=rna875|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MECSPPSQSKSPRPTEPPLLLYGAASVVGLLTLGSLPFLVIPMLRGNALP
YMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQR
GYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGR
QDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAAL
REITGRDGSDEQAEIKILEVTEDGFSVYRIKKK
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mRNA from alignment at CM002456.1:622006..623335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna875 ID=rna875|Name=rna875|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp|location=Sequence derived from alignment at CM002456.1:622006..623335+ (Nannochloropsis gaditana)
ACAGCAAGCGCGTTGCCCACGGGTGACTAGTTTCCCCGTCACTTTCATCA
CTCTCAATCGTTCATCGTGGCGTGGTGTCTATAAAAGTGCAACATCGAAT
GAGGATTCCTCAAAAACCCAACTCATGTCTATCTCTTGCGCAAAGGCACA
TGTTTCTTACCGGTACGTctttttaacctcctcatcttcttctaAATCTC
TTtcatggaaaaagaagaagctACGCCTCGAAAGGAGCAATGAAGAGTCC
TGAATCGGAAAACAAAATCTGATCTTGAGGATATAGCACGATTGAGAAGT
ACCGGTGCATGCATGGAATGCTCGCCCCCTAGCCAATCGAAGAGCCCCCG
TCCAACTGAGCCCCCTTTGCTCCTGTATGGGGCTGCAAGCGTTGTGGGCT
TGCTCACCCTAGGTTCCCTGCCCTTCTTAGTCATTCCTATGCTCAGAGGG
AATGCGTTACCATACATGAACATCCCCATGTCAAAATACAAAACTATTTT
CGATGAAGTGCTCCCTCGTCACATGCCGCGCAGGCGTGCAGGAAGTCCGC
CATTGCGCTTCATTGACCTGGGGCACGGCATGGGAGAGGCTGTGGTCAAT
GCTGCACAGCGAGGATACATAGCAACGGGTGTAGAGCTTAACCCGACCCT
CTACCTGCTATCCATCTGCAATGTCTGGCGGCATGGACTTTTGTGGCCGT
TGGAGCCGCGAGTAAGGCTGGTTTACGGGAACATGTGGAGAAAGGACATG
GAGTTGGGGAGACAGGACGTCATCCTTATGTTTGGAGTGCAGAGCTTGAT
GACCCGTTTGGCAGAAAGGCTTCGATCCGAGGCGCAGCATGATGCGTTGG
TGGTCCTATATCGGTTCAAGCTTGACCTGCGGTCGCGGGCGTCGCCTACA
GGGGCCGCATTGCGAGAGATCACCGGAAGGGACGGGAGTGACGAGCAAGC
GGAGATTAAAATTCTTGAAGTGACTGAGGATGGATTTTCTGTTTATCGCA
TCAAGAAAAAGTAGCCAGCTGCAGGCAATGGGAACACGTGAACACGAAGT
CAAAAGCAGTTAGAACCACTCATTATGCCAGCGACAAGCAAACAAGCTTC
ATTCATGTGTTGCGCAAAGAGGGAGATCTTTTTACATGTGTATGGGCATG
AACATGAAGGTTGTGCTCCAGTAGTCGATCAAATTACTTTACACCATGCG
ACCTTTTATCTGTCACAACTTCTGGCATCCAGATCCAGAGGATCCTGCAC
GTCGAGTATTCATCACCTTACCGATACCGTCACTGGCGTTCCCGCTCCCG
AGACGCGCATCTCAAAAACTGCGTGGCAtc
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Coding sequence (CDS) from alignment at CM002456.1:622006..623335+

>rna875 ID=rna875|Name=rna875|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at CM002456.1:622006..623335+ (Nannochloropsis gaditana)
ATGGAATGCTCGCCCCCTAGCCAATCGAAGAGCCCCCGTCCAACTGAGCC
CCCTTTGCTCCTGTATGGGGCTGCAAGCGTTGTGGGCTTGCTCACCCTAG
GTTCCCTGCCCTTCTTAGTCATTCCTATGCTCAGAGGGAATGCGTTACCA
TACATGAACATCCCCATGTCAAAATACAAAACTATTTTCGATGAAGTGCT
CCCTCGTCACATGCCGCGCAGGCGTGCAGGAAGTCCGCCATTGCGCTTCA
TTGACCTGGGGCACGGCATGGGAGAGGCTGTGGTCAATGCTGCACAGCGA
GGATACATAGCAACGGGTGTAGAGCTTAACCCGACCCTCTACCTGCTATC
CATCTGCAATGTCTGGCGGCATGGACTTTTGTGGCCGTTGGAGCCGCGAG
TAAGGCTGGTTTACGGGAACATGTGGAGAAAGGACATGGAGTTGGGGAGA
CAGGACGTCATCCTTATGTTTGGAGTGCAGAGCTTGATGACCCGTTTGGC
AGAAAGGCTTCGATCCGAGGCGCAGCATGATGCGTTGGTGGTCCTATATC
GGTTCAAGCTTGACCTGCGGTCGCGGGCGTCGCCTACAGGGGCCGCATTG
CGAGAGATCACCGGAAGGGACGGGAGTGACGAGCAAGCGGAGATTAAAAT
TCTTGAAGTGACTGAGGATGGATTTTCTGTTTATCGCATCAAGAAAAAGT
AG
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Synonyms
Publications