EWM29827.1, cds875 (CDS) Nannochloropsis gaditana

Overview
NameEWM29827.1
Unique Namecds875
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:622318..623019 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29827.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g67.325.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:622318..623019 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR026170FAM173
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|585112408|gb|EWM29827.1| (hypothetical protein Naga_100017g67 [Nannochloropsis gaditana])

HSP 1 Score: 475.707 bits (1223), Expect = 1.036e-169
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MECSPPSQSKSPRPTEPPLLLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRDGSDEQAEIKILEVTEDGFSVYRIKKK 233
            MECSPPSQSKSPRPTEPPLLLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRDGSDEQAEIKILEVTEDGFSVYRIKKK
Sbjct:    1 MECSPPSQSKSPRPTEPPLLLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRDGSDEQAEIKILEVTEDGFSVYRIKKK 233          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|923135501|ref|XP_013761216.1| (hypothetical protein AMSG_02195 [Thecamonas trahens ATCC 50062] >gi|906562937|gb|KNC56180.1| hypothetical protein AMSG_02195 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 87.8113 bits (216), Expect = 1.644e-17
Identity = 53/168 (31.55%), Postives = 90/168 (53.57%), Query Frame = 0
Query:   20 LLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKL 187
            +L G A+V G++   + PFL  P+ R   +PY+    ++ + + D++     PR   G+   R +DLG G G  V+ AA+RG +ATG E+N  L L S    WR G+      +      ++W+ D  L   D I++FGV  ++ ++  +L++E   +A V+  RFK+
Sbjct:   24 VLLGCAAVTGVMAALAAPFLT-PVFRKFTIPYVPAAPTQVRMVLDQI-----PRLDKGA---RVVDLGSGDGRVVIAAAKRGAMATGYEINYWLVLYSRWRAWREGVW----AQTTFRKADLWKTD--LSGFDAIVVFGVAEMLAQMESKLKAELADNAQVIACRFKM 176          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|1160131416|ref|XP_020391212.1| (protein FAM173B [Rhincodon typus])

HSP 1 Score: 79.7221 bits (195), Expect = 1.149e-14
Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 0
Query:    9 SKSPRPTEPPLLLYGAASVVGL-LTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRF 185
            ++S R     L L G  S  GL L+LG+ PF V P LR   LP++    ++ +T+        M + R G    + +D+G G G  V+ AA++G+ A G ELNP L   S    W+ G    +    R    ++W+ D        +++FGV  +MT L E+L+ E + +A VV  RF
Sbjct:    8 TRSGRKRHWGLALLGVVSGAGLALSLGAAPF-VAPALRRVCLPFVPASPAQVETVL------QMLKGRRG----KLVDIGSGDGRIVIAAAKQGFRAVGYELNPWLVWYSRYKAWQEG----VHHNTRFYISDLWKVDFS--EYSNVVIFGVPQMMTSLEEKLQRELRSNARVVACRF 168          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|701416642|ref|XP_009999669.1| (PREDICTED: protein FAM173B, partial [Chaetura pelagica])

HSP 1 Score: 77.411 bits (189), Expect = 5.228e-14
Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 0
Query:   31 LTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRDGSDEQA-EIKILEVT 221
            L  G+ PFL  P LR   LP++    ++ + +        M   R+GS     +D+G G G  V+ AA+RG+ A G ELNP L   S    WR G    +    +    ++W+  +       +++FGV  +M +L ++L  E + +A ++  RF          TG  +  +   D    +  E KILEVT
Sbjct:    6 LYAGAAPFLA-PALRKVCLPFVPATATQVRNVL------RMLENRSGS----LVDIGSGDGRIVIAAAKRGFKAVGYELNPWLVWYSRYRAWRDG----VHQNTKFCISDLWK--VSFSHYTNVVVFGVPQMMPQLGKKLEEELECNARIIACRFPFPCWIPDHTTGEGIDTVWAYDLKHSRGHETKILEVT 180          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|675887006|ref|XP_009029005.1| (hypothetical protein HELRODRAFT_135380, partial [Helobdella robusta] >gi|555689467|gb|ESN92699.1| hypothetical protein HELRODRAFT_135380, partial [Helobdella robusta])

HSP 1 Score: 77.0258 bits (188), Expect = 6.108e-14
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 0
Query:   29 GLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRF 185
            GLL   + PFL +P  R   LPY+     + K IF  +  R              IDLG G G  V+ AA++G++A GVELNP L   S    +  G         +    N++++   L + D I++FGV SLM  L  +L++E   D+L++  RF
Sbjct:   13 GLLCAATTPFL-LPAFRRICLPYVPATEVQMKNIFQALSGRKG----------NLIDLGSGDGRIVIEAARQGFVAVGVELNPWLVAYSKFRSYLAG----TSKNTKFKTSNLFKE--SLSKYDNIVIFGVDSLMEPLGNKLKAEVTEDSLIIACRF 152          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|817215775|ref|XP_012283997.1| (PREDICTED: protein FAM173B isoform X2 [Orussus abietinus] >gi|817215778|ref|XP_012283998.1| PREDICTED: protein FAM173B isoform X2 [Orussus abietinus])

HSP 1 Score: 74.7146 bits (182), Expect = 7.699e-13
Identity = 56/184 (30.43%), Postives = 90/184 (48.91%), Query Frame = 0
Query:    8 QSKSPRPTEPPLLLYGAASVVG----LLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKL 187
            +++  +P   P+  Y   +V G     L +   PF V P LR   LPY+     + + +   +      R R+G+     ID+G G G  V+ AA++G+ A GVELNP L   S       G    L  +      ++W+    L + D I++FGV+ +MT + E+  SE + D++VV+ RF L
Sbjct:   11 KTERGKPKISPVAGYVLITVTGGIGTALLIACAPF-VSPALRKICLPYVPATTVQVENVLSAL------RGRSGN----LIDVGSGDGRIVLAAARKGFKADGVELNPWLIAYSKIKAATQG----LASKTAFFRRDLWK--FNLTKYDNIVIFGVEQMMTEIEEKFISELRKDSVVVVCRFPL 177          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|397598837|gb|EJK57294.1| (hypothetical protein THAOC_22679 [Thalassiosira oceanica])

HSP 1 Score: 77.411 bits (189), Expect = 8.160e-13
Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   19 LLLYGAASVV--GLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYI--ATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKL 187
            LLL G A+++   L  L SLP    P+L     PY+    +K   +F  +      +R   + PL+F+DLG G G  V  AA+ G    + G E+NPTL++ +          W   P  +   G++WR D  L R DV+ ++G+  +M RL  +L+ E +  ++VV   F +
Sbjct:  291 LLLIGGAAILLPHLAVLLSLP----PVLMKRGAPYLPTFGNKMDVMFGIIRAHIKQQRSKNTKPLKFVDLGSGDGRVVFRAAREGLFKESVGYEINPTLHIFACLRKMITPKYW---PNTKFRMGDLWRTD--LSRFDVVAVYGLSPIMDRLGSKLKDELRPGSIVVSNVFSI 454          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|817215773|ref|XP_012283996.1| (PREDICTED: protein FAM173B isoform X1 [Orussus abietinus])

HSP 1 Score: 74.3294 bits (181), Expect = 9.298e-13
Identity = 56/184 (30.43%), Postives = 90/184 (48.91%), Query Frame = 0
Query:    8 QSKSPRPTEPPLLLYGAASVVG----LLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKL 187
            +++  +P   P+  Y   +V G     L +   PF V P LR   LPY+     + + +   +      R R+G+     ID+G G G  V+ AA++G+ A GVELNP L   S       G    L  +      ++W+    L + D I++FGV+ +MT + E+  SE + D++VV+ RF L
Sbjct:   14 KTERGKPKISPVAGYVLITVTGGIGTALLIACAPF-VSPALRKICLPYVPATTVQVENVLSAL------RGRSGN----LIDVGSGDGRIVLAAARKGFKADGVELNPWLIAYSKIKAATQG----LASKTAFFRRDLWK--FNLTKYDNIVIFGVEQMMTEIEEKFISELRKDSVVVVCRFPL 180          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|694857386|ref|XP_009470330.1| (PREDICTED: protein FAM173B [Nipponia nippon])

HSP 1 Score: 74.7146 bits (182), Expect = 9.553e-13
Identity = 55/204 (26.96%), Postives = 91/204 (44.61%), Query Frame = 0
Query:   19 LLLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRD-GSDEQAEIKILEVT 221
            L+  G    +  L   + PF V P LR   LP++    ++ + +        M   R+GS     +D+G G G  V+ AA+RG+ A G ELNP L   S    WR G    +    +    ++W+  +   R   +++FGV  +M +L ++L+ E + +A ++  RF          TG  +  +   D       E K LE+T
Sbjct:   30 LVTAGVGGTLVALYAAATPF-VTPALRKVCLPFVPATATQIQNVL------KMLENRSGS----LVDIGSGDGRIVIAAAKRGFKAVGYELNPWLVWYSRYRAWRDG----VHQNTKFYISDLWK--VSFSRYTNVVVFGVPQMMPQLEKKLQEELECNARIIACRFPFPCWIPDYTTGEGIDTVWAYDLKHSRGCETKSLEIT 216          
BLAST of EWM29827.1 vs. NCBI_GenBank
Match: gi|348561930|ref|XP_003466764.1| (PREDICTED: protein FAM173B [Cavia porcellus])

HSP 1 Score: 74.3294 bits (181), Expect = 1.352e-12
Identity = 61/205 (29.76%), Postives = 95/205 (46.34%), Query Frame = 0
Query:    7 SQSKSPRPTEPPLLLYGAA--SVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDLRSRASPTGAALREITGRDGS 209
            S++   + T   LLL G A  ++V L  + + PFL  P LR   LP++     + + +        M RRR GS     +D+G G G  V+ AA+ G+ A G ELNP L   S    WR G    +         ++W+  +   +   +++FGV  +M +L ++L  E Q DA V+  RF     + A  TG  +  +   D S
Sbjct:   26 SEAGGSQRTSWGLLLTGVAGGALVALYAVAT-PFLT-PALRKVCLPFVPATAKQIENVV------KMLRRRRGS----LVDVGSGDGRVVIAAAKEGFTAVGYELNPWLVWYSRYRAWREG----VRGSTSFYISDLWK--VSFSQYSNVVVFGVPQMMPQLEKKLELELQDDARVIACRFPFPHWTPAHVTGHGVDTVWAYDVS 212          
The following BLAST results are available for this feature:
BLAST of EWM29827.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112408|gb|EWM29827.1|1.036e-169100.00hypothetical protein Naga_100017g67 [Nannochlorops... [more]
gi|923135501|ref|XP_013761216.1|1.644e-1731.55hypothetical protein AMSG_02195 [Thecamonas trahen... [more]
gi|1160131416|ref|XP_020391212.1|1.149e-1432.58protein FAM173B [Rhincodon typus][more]
gi|701416642|ref|XP_009999669.1|5.228e-1428.65PREDICTED: protein FAM173B, partial [Chaetura pela... [more]
gi|675887006|ref|XP_009029005.1|6.108e-1433.12hypothetical protein HELRODRAFT_135380, partial [H... [more]
gi|817215775|ref|XP_012283997.1|7.699e-1330.43PREDICTED: protein FAM173B isoform X2 [Orussus abi... [more]
gi|397598837|gb|EJK57294.1|8.160e-1331.21hypothetical protein THAOC_22679 [Thalassiosira oc... [more]
gi|817215773|ref|XP_012283996.1|9.298e-1330.43PREDICTED: protein FAM173B isoform X1 [Orussus abi... [more]
gi|694857386|ref|XP_009470330.1|9.553e-1326.96PREDICTED: protein FAM173B [Nipponia nippon][more]
gi|348561930|ref|XP_003466764.1|1.352e-1229.76PREDICTED: protein FAM173B [Cavia porcellus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna875rna875Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications