rna8749, rna8749 (mRNA) Nannochloropsis gaditana

Overview
Namerna8749
Unique Namerna8749
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length616
Alignment locationKK037250.1:69656..70726 -

Link to JBrowse

Properties
Property NameValue
Productthioredoxin-like protein 4a
Orig transcript idgnl|cribi|Naga_100157g1.45.mrna
Orig protein idgnl|cribi|Naga_100157g1.45
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:69656..70726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100157g1gene8481Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8749rna8749-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21942.1cds8719Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8749 ID=rna8749|Name=rna8749|organism=Nannochloropsis gaditana|type=mRNA|length=616bp
CCACGGCCCCACCGTGCTCCTGGTCCGCGACACCACGGGCGCCGTCTTTG
GGTTCTTCACGACGGAAGCCTGGCGGGAGAGCAACGGCTTCTTCGGCTCT
TCGGAGTGCTTCCTCTTTCGCCTCTGCCCTTCCTTCATCGAGTCCCGGCC
CAAGGCAGGGAGGGGAGGGCTGGACGGAGGGCGGGAGGGAGGGGGAGCGC
GGCACTTCATGTACCTGAATCTGAAGGGTTTCTCCTTGCCGCATGGCCTC
GGGGTGGGCGGCAGCGTGGATACAGGCTTCCGGCTCTGGATCCCCGAGAG
CCTGGAAGGCTGTGTGGCCGGCGACCGGGACGCTTCTTTCGCCTGGGGGC
CGTTGGCTGGCAAAACGGGCGGGGGGAAGGGCGGGAGGGAGGGGGAGTTC
GAGATGGAAGGGCTGGAGGTGTGGGGGGTGGGAGGGGAGGAGGCGATCGA
GGCGGCCTGCAACGCCCAGGGAGAGGCTCGGCAGATGATGGCGGACAACA
TCGCCCGGGCCCGGCGCGTGGACAAGAGCAAGTTTGTCGATAACGACTTT
GACAAGGAATTCTTGCTGGGGAAGACGTTTGGGCAAGGGAAGCGGGAGCG
GAGGGGGAGGGATTGA
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protein sequence of rna8749

>rna8749-protein ID=rna8749-protein|Name=rna8749|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MSNLSLLLRLTFLACFFFTCNHSGERTSPASASRLLPSGKMSYMLPHLRS
GWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYL
VDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQ
EMIDIIETVYRGARKGRGLVVSPKDYSTRYRY
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mRNA from alignment at KK037250.1:69656..70726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8749 ID=rna8749|Name=rna8749|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp|location=Sequence derived from alignment at KK037250.1:69656..70726- (Nannochloropsis gaditana)
ATGAGTAATTTAAGCTTGCTCCTTCGACTGACTTTTCTGGCGTGTTTCTT
TTTCACGTGCAACCACAGCGGAGAGCGAACCTCGCCTGCCTCAGCTTCAC
GGCTTCTTCCCTCTGGCAAGGTGAGTGACGACAACAAGGCATGTCATACG
CGCACAGTTATTTTATCCTTGGCATATAGGCAGAAGGCATTGGAATGATG
CGTGTGGTTGAGATGAGAACCCCGTGCAAGGACGGAAGCGTGCAGGAAAG
CTTCTGGAAAGCGTGACCTCAGGACAAGGCTACAATACTGACGCCAGCAC
CAGGCAGCTGGAACAACGTCCCACACAGGAATCATGTTGACCATTCAACC
CTTTTCCATGCTCCGAATTCGATTTATGGTCCGTTGACGCATTGCATTTT
AATCTTACATGGCTTTCCCCTCCCTCCCTCCTTCCCTCCCTGCTTCTCCG
CTTCTTCATGATGTAGATGTCTTACATGCTACCCCACCTCCGTTCCGGCT
GGGCCGTGGACCAAGCCATTCTCAACGAGGAGAACAAGGTAGTGGTAATC
CGGTTTGGGCACGACGAGAACGAGACGTGCATGCAGATGGACGAAATTTT
GTACAAAATCTCGGAAGACGTGCGCAATTTTGCGGCCATATACTTGGTGG
ACACTACCGAGGTGCGTAACAAGTGATTACCCTTTCTTTGCATTTATATG
TGTTGCGTGATACAGTTTTCTTGCGTTGGGTGCGCGATGCCTTCTCCTTG
CATTTGTTGTGCCCCCTTCTGGGACGAGGCTCTCGACGTGGGGGACGGGT
CGGCCTCACACCAGCGGCTTGGTTTCCTCTGGCACAGGTGCCGGACTTCA
ATGTGATGTACGAGCTGTACGACGAATGCACCTGCATGTTTTTCTTCCGG
AACAAGCACATCATGATCGACTTGGGCACGGGGAACAACAACAAAATCAA
TTTCTTGATCAGCGACAAGCAGGAAATGATCGACATCATCGAGACCGTCT
ACCGCGGGGCCCGCAAAGGGCGGGGGCTGGTGGTCTCCCCCAAGGATTAC
TCCACACGGTACAGATACTAG
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Coding sequence (CDS) from alignment at KK037250.1:69656..70726-

>rna8749 ID=rna8749|Name=rna8749|organism=Nannochloropsis gaditana|type=CDS|length=1647bp|location=Sequence derived from alignment at KK037250.1:69656..70726- (Nannochloropsis gaditana)
GTGCCGGACTTCAATGTGATGTACGAGCTGTACGACGAATGCACCTGCAT
GTTTTTCTTCCGGAACAAGCACATCATGATCGACTTGGGCACGGGGAACA
ACAACAAAATCAATTTCTTGATCAGCGACAAGCAGGAAATGATCGACATC
ATCGAGACCGTCTACCGCGGGGCCCGCAAAGGGCGGGGGCTGGTGGTCTC
CCCCAAGGATTACTCCACACGGTACAGATACTAGATGTCTTACATGCTAC
CCCACCTCCGTTCCGGCTGGGCCGTGGACCAAGCCATTCTCAACGAGGAG
AACAAGGTAGTGGTAATCCGGTTTGGGCACGACGAGAACGAGACGTGCAT
GCAGATGGACGAAATTTTGTACAAAATCTCGGAAGACGTGCGCAATTTTG
CGGCCATATACTTGGTGGACACTACCGAGATGAGTAATTTAAGCTTGCTC
CTTCGACTGACTTTTCTGGCGTGTTTCTTTTTCACGTGCAACCACAGCGG
AGAGCGAACCTCGCCTGCCTCAGCTTCACGGCTTCTTCCCTCTGGCAAGG
TGCCGGACTTCAATGTGATGTACGAGCTGTACGACGAATGCACCTGCATG
TTTTTCTTCCGGAACAAGCACATCATGATCGACTTGGGCACGGGGAACAA
CAACAAAATCAATTTCTTGATCAGCGACAAGCAGGAAATGATCGACATCA
TCGAGACCGTCTACCGCGGGGCCCGCAAAGGGCGGGGGCTGGTGGTCTCC
CCCAAGGATTACTCCACACGGTACAGATACTAGATGTCTTACATGCTACC
CCACCTCCGTTCCGGCTGGGCCGTGGACCAAGCCATTCTCAACGAGGAGA
ACAAGGTAGTGGTAATCCGGTTTGGGCACGACGAGAACGAGACGTGCATG
CAGATGGACGAAATTTTGTACAAAATCTCGGAAGACGTGCGCAATTTTGC
GGCCATATACTTGGTGGACACTACCGAGATGAGTAATTTAAGCTTGCTCC
TTCGACTGACTTTTCTGGCGTGTTTCTTTTTCACGTGCAACCACAGCGGA
GAGCGAACCTCGCCTGCCTCAGCTTCACGGCTTCTTCCCTCTGGCAAGGT
GCCGGACTTCAATGTGATGTACGAGCTGTACGACGAATGCACCTGCATGT
TTTTCTTCCGGAACAAGCACATCATGATCGACTTGGGCACGGGGAACAAC
AACAAAATCAATTTCTTGATCAGCGACAAGCAGGAAATGATCGACATCAT
CGAGACCGTCTACCGCGGGGCCCGCAAAGGGCGGGGGCTGGTGGTCTCCC
CCAAGGATTACTCCACACGGTACAGATACTAGATGTCTTACATGCTACCC
CACCTCCGTTCCGGCTGGGCCGTGGACCAAGCCATTCTCAACGAGGAGAA
CAAGGTAGTGGTAATCCGGTTTGGGCACGACGAGAACGAGACGTGCATGC
AGATGGACGAAATTTTGTACAAAATCTCGGAAGACGTGCGCAATTTTGCG
GCCATATACTTGGTGGACACTACCGAGATGAGTAATTTAAGCTTGCTCCT
TCGACTGACTTTTCTGGCGTGTTTCTTTTTCACGTGCAACCACAGCGGAG
AGCGAACCTCGCCTGCCTCAGCTTCACGGCTTCTTCCCTCTGGCAAG
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Synonyms
Publications