EWM21942.1, cds8719 (CDS) Nannochloropsis gaditana

Overview
NameEWM21942.1
Unique Namecds8719
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:70607..70726 -
Alignment locationKK037250.1:70066..70260 -
Alignment locationKK037250.1:69656..69889 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21942.1
Productthioredoxin-like protein 4a
Orig transcript idgnl|cribi|Naga_100157g1.45.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:70607..70726 -
KK037250.1supercontigKK037250.1:70066..70260 -
KK037250.1supercontigKK037250.1:69656..69889 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR004123mRNA_splic_U5
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|585102294|gb|EWM21942.1| (thioredoxin-like protein 4a [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 1.336e-134
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MSNLSLLLRLTFLACFFFTCNHSGERTSPASASRLLPSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            MSNLSLLLRLTFLACFFFTCNHSGERTSPASASRLLPSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY
Sbjct:    1 MSNLSLLLRLTFLACFFFTCNHSGERTSPASASRLLPSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|543260274|ref|XP_005421012.1| (PREDICTED: thioredoxin-like protein 4A isoform X1 [Geospiza fortis])

HSP 1 Score: 259.996 bits (663), Expect = 1.878e-86
Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 0
Query:   37 PSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            P+ +MSYMLPHL +GW VDQAIL+EE++VVVIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:   12 PAARMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 157          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|1062854940|ref|XP_017937124.1| (PREDICTED: thioredoxin-like protein 4A isoform X1 [Manacus vitellinus])

HSP 1 Score: 260.381 bits (664), Expect = 3.775e-86
Identity = 118/146 (80.82%), Postives = 131/146 (89.73%), Query Frame = 0
Query:   37 PSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            P  +MSYMLPHL +GW VDQAIL+EE++VVVIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:   41 PPARMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 186          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|1051118397|ref|XP_017676893.1| (PREDICTED: thioredoxin-like protein 4A isoform X2 [Lepidothrix coronata])

HSP 1 Score: 258.84 bits (660), Expect = 1.084e-85
Identity = 118/146 (80.82%), Postives = 131/146 (89.73%), Query Frame = 0
Query:   37 PSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            P  +MSYMLPHL +GW VDQAIL+EE++VVVIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:   33 PPARMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 178          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|1051118395|ref|XP_017676885.1| (PREDICTED: thioredoxin-like protein 4A isoform X1 [Lepidothrix coronata])

HSP 1 Score: 258.84 bits (660), Expect = 1.201e-85
Identity = 118/146 (80.82%), Postives = 131/146 (89.73%), Query Frame = 0
Query:   37 PSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            P  +MSYMLPHL +GW VDQAIL+EE++VVVIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:   37 PPARMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 182          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|676284727|gb|KFO37224.1| (Thioredoxin-like protein 4A [Fukomys damarensis])

HSP 1 Score: 261.922 bits (668), Expect = 9.740e-85
Identity = 121/165 (73.33%), Postives = 138/165 (83.64%), Query Frame = 0
Query:   24 GERTSPASASRLL------PSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            G+  +P  A+R        P  +MSYMLPHL +GW VDQAIL+EE++VVVIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEM+DIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:  170 GDWATPDEATRARYSAAEPPGPRMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 334          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|658873492|ref|XP_008419697.1| (PREDICTED: thioredoxin-like protein 4A [Poecilia reticulata])

HSP 1 Score: 254.603 bits (649), Expect = 1.303e-84
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0
Query:   41 MSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            MSYMLPHL +GW VDQAIL+EE++V+VIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN++I DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVLVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTAMFFFRNKHIMIDLGTGNNNKINWIIEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|617424927|ref|XP_007559818.1| (PREDICTED: thioredoxin-like protein 4A [Poecilia formosa] >gi|831545806|ref|XP_012726364.1| thioredoxin-like protein 4A [Fundulus heteroclitus] >gi|928054576|ref|XP_013876559.1| PREDICTED: thioredoxin-like protein 4A [Austrofundulus limnaeus] >gi|961922711|ref|XP_014908798.1| PREDICTED: thioredoxin-like protein 4A [Poecilia latipinna] >gi|961935770|ref|XP_014865156.1| PREDICTED: thioredoxin-like protein 4A [Poecilia mexicana] >gi|974099520|ref|XP_015248414.1| PREDICTED: thioredoxin-like protein 4A [Cyprinodon variegatus] >gi|1007741869|ref|XP_015811180.1| PREDICTED: thioredoxin-like protein 4A [Nothobranchius furzeri] >gi|1041106632|ref|XP_017276501.1| PREDICTED: thioredoxin-like protein 4A [Kryptolebias marmoratus])

HSP 1 Score: 254.603 bits (649), Expect = 1.587e-84
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0
Query:   41 MSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            MSYMLPHL +GW VDQAIL+EE++V+VIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN++I DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVLVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWIIEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|551521517|ref|XP_005812248.1| (PREDICTED: thioredoxin-like protein 4A [Xiphophorus maculatus])

HSP 1 Score: 254.218 bits (648), Expect = 2.064e-84
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0
Query:   41 MSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            MSYMLPHL +GW VDQAIL+EE++V+VIRFGHD + TCM+MDE+LY I+E V+NFA IYLVD TEVPDFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN++I DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVLVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWIIEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of EWM21942.1 vs. NCBI_GenBank
Match: gi|1061478084|gb|ODM95739.1| (Thioredoxin-like protein 4A [Orchesella cincta])

HSP 1 Score: 253.832 bits (647), Expect = 2.686e-84
Identity = 114/142 (80.28%), Postives = 130/142 (91.55%), Query Frame = 0
Query:   41 MSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
            MSYMLPHL +GW VDQAIL+EE++VV+IRFGHD + TCM+MDE+LY I+E V+NFA +YLVD +EVPDFN MYELYD CTCMFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVIIRFGHDWDPTCMKMDEVLYGIAEKVKNFAGVYLVDISEVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142          
The following BLAST results are available for this feature:
BLAST of EWM21942.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102294|gb|EWM21942.1|1.336e-134100.00thioredoxin-like protein 4a [Nannochloropsis gadit... [more]
gi|543260274|ref|XP_005421012.1|1.878e-8680.82PREDICTED: thioredoxin-like protein 4A isoform X1 ... [more]
gi|1062854940|ref|XP_017937124.1|3.775e-8680.82PREDICTED: thioredoxin-like protein 4A isoform X1 ... [more]
gi|1051118397|ref|XP_017676893.1|1.084e-8580.82PREDICTED: thioredoxin-like protein 4A isoform X2 ... [more]
gi|1051118395|ref|XP_017676885.1|1.201e-8580.82PREDICTED: thioredoxin-like protein 4A isoform X1 ... [more]
gi|676284727|gb|KFO37224.1|9.740e-8573.33Thioredoxin-like protein 4A [Fukomys damarensis][more]
gi|658873492|ref|XP_008419697.1|1.303e-8481.69PREDICTED: thioredoxin-like protein 4A [Poecilia r... [more]
gi|617424927|ref|XP_007559818.1|1.587e-8481.69PREDICTED: thioredoxin-like protein 4A [Poecilia f... [more]
gi|551521517|ref|XP_005812248.1|2.064e-8481.69PREDICTED: thioredoxin-like protein 4A [Xiphophoru... [more]
gi|1061478084|gb|ODM95739.1|2.686e-8480.28Thioredoxin-like protein 4A [Orchesella cincta][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8749rna8749Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications