rna8740, rna8740 (mRNA) Nannochloropsis gaditana

Overview
Namerna8740
Unique Namerna8740
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationKK037250.1:49965..51195 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101140g4.9848.mrna
Orig protein idgnl|cribi|Naga_101140g4.9848
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:49965..51195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101140g4gene8472Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8740rna8740-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21960.1cds8711Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8740 ID=rna8740|Name=rna8740|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGGCCCCGAGGGGGGGGAGGGCGGGAGGGAGGGAGGACGGTCTCTCGGA
CCGAGAGCGAAGGCGAGAAGGAGGGCGGGCGGGAGGAAGGGAGGGAGGGC
AGCTCGGAGGTCACCGTGGGAGGGCGGGGTACGGGCTTGTACCCCCCTCT
TGTCCATCGGAACACGTCCCAAGGCCGACGGCCACCGAGCGTCTACGAGG
CGGACGGGAACAGTCATTTGCTGTTGCTGCAGGGCAGGATGGAGGTCGGG
AAGGAGGGCGGGGGGGAGGGCGGGGAGGAGGGCGGGAAGGAGGAGGGGCA
CCGTCGGCATGGCTTGCCCCAGCTGTGGTGGGGGCGGAGCACCGGAAGGC
AGGATGA
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protein sequence of rna8740

>rna8740-protein ID=rna8740-protein|Name=rna8740|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
GATVVMPSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQV
QRRRGAGKEGGKEGGKEGGKAALGPTVSYLPDSLRMMEEGPEESEGGGGG
RGGGGGRRSQSSRALFGFDEEEGATQVKDMLEEEQLHRLVESRLHPLGMV
GAPVALAGTSSIILPVRAEEVGREGGREGGEGARRGDGGGAAGGRTKSVT
FGGVAGVAQEDSGKEGGEEEGEEEEEEDDGLFQLRMSRVLSKGGTLKKGG
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mRNA from alignment at KK037250.1:49965..51195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8740 ID=rna8740|Name=rna8740|organism=Nannochloropsis gaditana|type=mRNA|length=1231bp|location=Sequence derived from alignment at KK037250.1:49965..51195+ (Nannochloropsis gaditana)
GGGGCGACGGTGGTGATGCCGTCGACGACGCTGACGGCGCCCCCCACGGT
GGTggtcccctacctccctgcTGGCCGTTACACGCTGGCGCCCGGAACCG
TGGCCTTCGTCCTACCCGAGAGTAAATGCCGACTGGTCCGGCAACAGGTG
CAGCGTCGGCGaggcgcggggaaggagggagggaaggagggagggaagga
gggagggaaggcggccTTGGGACCCACAGTGTCCTATCTGCCCGATTCGT
TGCGTatgatggaagagggccCCGAGGagtccgagggaggaggaggagga
agaggaggagggggagggaggaggtcgcagTCCTCCCGGGCCTTATTTGg
cttcgacgaggaggagggggcgaccCAGGTCAAGGATATgctcgaggaag
agcagCTCCATCGCCTGGTGGAGAGCCGTTTGCACCCGTTGGGGATGGTG
GGGGCGCCGGTAGCCTTGGCGGgtacctcttccatcatcctcccggtgcg
ggcagaggaggtcggaagagagggagggagggagggaggggaaggagcga
ggaggggcgatgGCGGGGGGGCTGCCGGGGGCCGGACGAAGAGCGTGACC
TTCGGAGGGGTGGCAGGGGTGGCACAAGAGGAtagcgggaaggagggagg
ggaggaggagggggaagaggaggaggaggaagacgacggctTGTTTCAGC
TTCGAATGAGTCGCGTGCtgtcgaagggggggacgtTGAAAAAAGGGGGC
TAGAGCAGAAAGTGTGGAGAAAaaagtgggggagggagaaagggagggag
acatgggaggagagggctgCGGCAATGGACGAGCGCCGACGGGGGCTGTG
CATGGAATCACGAGGAAGGCTTGAgtgaggatggaaagggaggaggagat
gcgggcGGCTTTGTGTGGAATGCAAACGTAGAGTGACAAAGAATCTTGAA
TTTCGATCGTGcttgagggaaaggggagggaagtgatgagtgaagatgag
gaaggggttgcgcgcgctttctctttcgaggacgagggagagctgTACGA
GACCCCAGAAAATGACACGTCAGCATCCTCCGCActccccgccttgccgt
CTTCCGTTTCAACGAATTTCTTTTCTGTATCTTACGACCctacttccccc
ccccccctctttcaaaTTCTCGCGCCGGTACTCGTCCTGCACACGGAAGA
ACcaatcctttcctcccccttttcccttcac
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Coding sequence (CDS) from alignment at KK037250.1:49965..51195+

>rna8740 ID=rna8740|Name=rna8740|organism=Nannochloropsis gaditana|type=CDS|length=753bp|location=Sequence derived from alignment at KK037250.1:49965..51195+ (Nannochloropsis gaditana)
GGGGCGACGGTGGTGATGCCGTCGACGACGCTGACGGCGCCCCCCACGGT
GGTggtcccctacctccctgcTGGCCGTTACACGCTGGCGCCCGGAACCG
TGGCCTTCGTCCTACCCGAGAGTAAATGCCGACTGGTCCGGCAACAGGTG
CAGCGTCGGCGaggcgcggggaaggagggagggaaggagggagggaagga
gggagggaaggcggccTTGGGACCCACAGTGTCCTATCTGCCCGATTCGT
TGCGTatgatggaagagggccCCGAGGagtccgagggaggaggaggagga
agaggaggagggggagggaggaggtcgcagTCCTCCCGGGCCTTATTTGg
cttcgacgaggaggagggggcgaccCAGGTCAAGGATATgctcgaggaag
agcagCTCCATCGCCTGGTGGAGAGCCGTTTGCACCCGTTGGGGATGGTG
GGGGCGCCGGTAGCCTTGGCGGgtacctcttccatcatcctcccggtgcg
ggcagaggaggtcggaagagagggagggagggagggaggggaaggagcga
ggaggggcgatgGCGGGGGGGCTGCCGGGGGCCGGACGAAGAGCGTGACC
TTCGGAGGGGTGGCAGGGGTGGCACAAGAGGAtagcgggaaggagggagg
ggaggaggagggggaagaggaggaggaggaagacgacggctTGTTTCAGC
TTCGAATGAGTCGCGTGCtgtcgaagggggggacgtTGAAAAAAGGGGGC
TAG
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Synonyms
Publications