EWM21960.1, cds8711 (CDS) Nannochloropsis gaditana

Overview
NameEWM21960.1
Unique Namecds8711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:49965..50717 +

Link to JBrowse

Properties
Property NameValue
Start range49965
Start range.
Protein idEWM21960.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101140g4.9848.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:49965..50717 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21960.1 vs. NCBI_GenBank
Match: gi|585102321|gb|EWM21960.1| (hypothetical protein Naga_101140g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 472.626 bits (1215), Expect = 5.645e-168
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 GATVVMPSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRRGAGKEGGKEGGKEGGKAALGPTVSYLPDSLRMMEEGPEESEGGGGGRGGGGGRRSQSSRALFGFDEEEGATQVKDMLEEEQLHRLVESRLHPLGMVGAPVALAGTSSIILPVRAEEVGREGGREGGEGARRGDGGGAAGGRTKSVTFGGVAGVAQEDSGKEGGEEEGEEEEEEDDGLFQLRMSRVLSKGGTLKKGG 250
            GATVVMPSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRRGAGKEGGKEGGKEGGKAALGPTVSYLPDSLRMMEEGPEESEGGGGGRGGGGGRRSQSSRALFGFDEEEGATQVKDMLEEEQLHRLVESRLHPLGMVGAPVALAGTSSIILPVRAEEVGREGGREGGEGARRGDGGGAAGGRTKSVTFGGVAGVAQEDSGKEGGEEEGEEEEEEDDGLFQLRMSRVLSKGGTLKKGG
Sbjct:    1 GATVVMPSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRRGAGKEGGKEGGKEGGKAALGPTVSYLPDSLRMMEEGPEESEGGGGGRGGGGGRRSQSSRALFGFDEEEGATQVKDMLEEEQLHRLVESRLHPLGMVGAPVALAGTSSIILPVRAEEVGREGGREGGEGARRGDGGGAAGGRTKSVTFGGVAGVAQEDSGKEGGEEEGEEEEEEDDGLFQLRMSRVLSKGGTLKKGG 250
[Close]
BLAST of EWM21960.1 vs. NCBI_GenBank
Match: gi|585102329|gb|EWM21965.1| (hypothetical protein Naga_100823g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 95.5153 bits (236), Expect = 6.641e-19
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0 
Query:    7 PSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR 53
            P+  L APPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR
Sbjct:  256 PAMPLVAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR 302
The following BLAST results are available for this feature:
BLAST of EWM21960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102321|gb|EWM21960.1|5.645e-168100.00hypothetical protein Naga_101140g4, partial [Nanno... [more]
gi|585102329|gb|EWM21965.1|6.641e-1991.49hypothetical protein Naga_100823g2, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8740rna8740Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications