rna8738, rna8738 (mRNA) Nannochloropsis gaditana

Overview
Namerna8738
Unique Namerna8738
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1989
Alignment locationKK037250.1:48044..48941 +

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Properties
Property NameValue
Productcyclic nucleotide-binding protein
Orig transcript idgnl|cribi|Naga_102130g1.1341.mrna
Orig protein idgnl|cribi|Naga_102130g1.1341
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:48044..48941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102130g1gene8470Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8738rna8738-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21964.1cds8709Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8738 ID=rna8738|Name=rna8738|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp
ATGGCAGATTTTACAGAGCACTCGGATCCACATCCATCCTCCTCTGCGGA
TGTGGGTATGGGGACTTTCGTGATGGCCCTGACTCTGGGAATCATCGCCC
GGGCCTATCTGTCTTCCCTGATCCGTCTCCCGTACACGTGCCTCGTCCTC
ATCTTCGGACTTCTCTATGGCTTTATTATCTACACGGAAGTCGGGATCAC
GGGATCAGACATCTTCAGTCGATCCGCAGACCTGTGGATCAATATCTCGC
CCGAAGCTATCTTGACGGTGATCCTGCCTATCCTGATCTTCGGTTCGTCC
TTCGCCAGTGACCTTCACCTGTTCTTGCAGCAGCTGACTCCTGTGTTGAC
GCTTGCCGGGCCTGCTGTGCTTGTCAATACAGCATTGCTGGGGCTGACGG
CCAAATACGTGCTACCGTACGGTTGGGACTGGGCCACATCCTTCATGGTA
GGGTCGATGCTGTCAGCGACAGACCCTGTGGCCGTGGTGGCGATATTGAA
GGAGCTGGGAGTGGTGGAAAGCCTGTCCATCCTGATCGACGGGGAGAGCT
TGCTGAACGACGGCTTTGCCATCGTCCTGTACACGATATTCAGCCGACTC
GTTCTGCACGAAGAGACCTTCTCGCCGTTGGAGACGTTGGAGGCGGCCGT
TACTCTCTGTCTGGGCGGGCCGGCCATTGGGGTGGTGGTAGGGGCCGCCA
CAAGCTACATCCTCGGCACGCTCATCAACGACTCCGCCTCTGAAATTACC
GTGACCATCCTCTGCGGCTACGGTGCCTACCTCCTTGCCGAGCTCGCCGA
AGCTTCGGGTGTCCTCTCCATGGTGGTGGCTGGTCTCTACCTCTCCTTCC
ACAGCGTCGGCCGTATCTCCGCCCGGGTCACCCGGTCATTGACCTCCTTC
TGGGCCATGGCGGCCTTCATTACCGAGACCATCATTTTCTTTGTCAGCGG
CTTGATCATGGCGGAGAAAGCCTTGGTCTCAGAGACTATCTTGCCGCGCG
ACTGGGGCTACCTCTTCCTCTTCTATCTCATCCTGAACGCTACCCGCTTC
GTCGGGGTTTTCCTCTTCTTCCCCACCTTAGCCCGTGGTCCCTACGGTAT
CAATTGGCGCCAAGCCGTTCTGCTCTCGTACGGAGGATTGCGGGGTGCAG
TCTCCTTAACTTTGGCCTTGGTCGTGAGTCAGGAAGAGGGAATTCCGGAG
GAAACCCGCGCACTCATCCTCTTCTTCACGGCTGGCATTGTCCTTCTGAC
CATATTGATCAACGGTTCTACTTGCAAGCTCGTGCTTCAGAAGCTCAAGC
TGAACAATCCTACCCGGGTGGAGCAGGAACTTTACATTCGCGCCATGAAC
CTGATCGAAAACGAGCTCGAGGTCTTCGCAGGGAAGCTTAAGAACGATAA
GTATCTGGGGAGTGCGGATTGGAACGTGGTTTATCGTTATCTGCCCGTGT
TCTCGCCGCAAATCTATTGGCACCGTGTAAGGGAAGGGCACATTTGTCTG
GACGAGGCAGAGATTGCCTTGGTGGGCCGGTACGTGCGGGAAAATGAGCG
TCAGGAGAAAAAAGGGAAGGAAGAAGGGGGGGGCTTCAGCGATGAGGAGG
GGGGCGCAGGTCTTGGCAGAGCGGAGGAGAACGGGGCGGCCCTTGGACCC
CAAAAGTCGTTCTTTGGGAGCTTTCTCTTTCGACCCTTCGCCTGCGTTCT
CTCCGTGATGGGCTACAAACCTGGCAAGGACGGAGGGGGAGGGGAAGAGG
AGTGCAGCTACGAGGAGCTTCCCACCGGCCTTCGTCGCCGCTGGCGAGAG
TACACGAGCCGGTTCAACGGAAATTTGAACACCGGGGTCGATGGCGAGAT
GCTATGTGCGATTCGGAAAAAGGTGTGGCAGGGAGTTTGGGCGGGGCGAT
GCTGCGGGGAGGAGGGGATGGAGGAAAGGATGGAGGGCGGGAGGGAGGGC
GGGGAGGCGAGTGGTCAGCTCCGGGGAGCCTTCGGGTGA
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protein sequence of rna8738

>rna8738-protein ID=rna8738-protein|Name=rna8738|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MDTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAF
FFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEE
FVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREV
SAWTTPWLNSTTTPTPRPPPPDPPSWPASPSSASSLPPSATSSSPLPPPS
AVTCTSGATPASSPKRPPSLPPPLLPSRAGT
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mRNA from alignment at KK037250.1:48044..48941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8738 ID=rna8738|Name=rna8738|organism=Nannochloropsis gaditana|type=mRNA|length=898bp|location=Sequence derived from alignment at KK037250.1:48044..48941+ (Nannochloropsis gaditana)
ATGGACACATCGGTACCCCTGAATGAATGGGCCGGCCTCGAGCACcacat
cctctttcccctccgcgccgTCCGAGCCCAAGCGCGACTTCGGCGGCTCC
CCttggtgggaagggcggtgCAATACCTCCTGGGGAAAAAACTGGCGTTC
TTCTTTGAATTGGCCGTCGTCTTCATCCAATCGCACTCGAACGCGCACAA
AAAACTGAACGAACTCTTCGGTAAAAACGGGCCCGTGACCCGGCAGCtcg
agaaggaagtggaggaggaagtgggcaaggccaaggccgccctGGAAGAG
TTCgtgcccgtcttccccgacATCATCAACAGCGTCAAGACGGAAATGGC
GGCCCGATACATGCTCAACAAGTGTCGCTccatgctggaggcggccatgg
agagCGGCTCCTTGGAAAAACGGGAGTTTGAAGACGCGATCCGGGAGGTC
AGTGCGTAAGCATTTGAATGTTTGAATTTGAAAGATGGTGGGAACCGATG
GAAGACTTTGAAGCCTTGACGGCGAGGTAGTAAGAGAGAAGACTAGGCCc
gatcgcctcctcgctttccatTTGCGGTGTCCGATctcacttccccccct
tgttccctccctccctccctccctccctccctccctccttccctccctgc
cataTAGGTGGACGACTCCATGGTTAAACTCCACGACCACACCCACGCCg
aggccccctccccccgatcctccctcctggccagcctctccttcctccgc
ttcctccctccctcccagcgcgacctcctcttctcctctgcctccccctt
ctgccGTGACGTGTACATCCGGAGCGacacctgcttcctccccaaaacgt
cctccctcccttcctccccccctccttccctcccgggcTGGTACGTGA
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Coding sequence (CDS) from alignment at KK037250.1:48044..48941+

>rna8738 ID=rna8738|Name=rna8738|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at KK037250.1:48044..48941+ (Nannochloropsis gaditana)
ATGGACACATCGGTACCCCTGAATGAATGGGCCGGCCTCGAGCACcacat
cctctttcccctccgcgccgTCCGAGCCCAAGCGCGACTTCGGCGGCTCC
CCttggtgggaagggcggtgCAATACCTCCTGGGGAAAAAACTGGCGTTC
TTCTTTGAATTGGCCGTCGTCTTCATCCAATCGCACTCGAACGCGCACAA
AAAACTGAACGAACTCTTCGGTAAAAACGGGCCCGTGACCCGGCAGCtcg
agaaggaagtggaggaggaagtgggcaaggccaaggccgccctGGAAGAG
TTCgtgcccgtcttccccgacATCATCAACAGCGTCAAGACGGAAATGGC
GGCCCGATACATGCTCAACAAGTGTCGCTccatgctggaggcggccatgg
agagCGGCTCCTTGGAAAAACGGGAGTTTGAAGACGCGATCCGGGAGGTC
AGTGCGTGGACGACTCCATGGTTAAACTCCACGACCACACCCACGCCgag
gccccctccccccgatcctccctcctggccagcctctccttcctccgctt
cctccctccctcccagcgcgacctcctcttctcctctgcctcccccttct
gccGTGACGTGTACATCCGGAGCGacacctgcttcctccccaaaacgtcc
tccctcccttcctccccccctccttccctcccgggcTGGTACGTGAATGG
ACACATCGGTACCCCTGAATGAATGGGCCGGCCTCGAGCACcacatcctc
tttcccctccgcgccgTCCGAGCCCAAGCGCGACTTCGGCGGCTCCCCtt
ggtgggaagggcggtgCAATACCTCCTGGGGAAAAAACTGGCGTTCTTCT
TTGAATTGGCCGTCGTCTTCATCCAATCGCACTCGAACGCGCACAAAAAA
CTGAACGAACTCTTCGGTAAAAACGGGCCCGTGACCCGGCAGCtcgagaa
ggaagtggaggaggaagtgggcaaggccaaggccgccctGGAAGAGTTCg
tgcccgtcttccccgacATCATCAACAGCGTCAAGACGGAAATGGCGGCC
CGATACATGCTCAACAAGTGTCGCTccatgctggaggcggccatggagag
CGGCTCCTTGGAAAAACGGGAGTTTGAAGACGCGATCCGGGAGGTCAGTG
CGTGGACGACTCCATGGTTAAACTCCACGACCACACCCACGCCgaggccc
cctccccccgatcctccctcctggccagcctctccttcctccgcttcctc
cctccctcccagcgcgacctcctcttctcctctgcctcccccttctgccG
TGACGTGTACATCCGGAGCGacacctgcttcctccccaaaacgtcctccc
tcccttcctccccccctccttccctcccgggcTGGTACGTGA
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Synonyms
Publications