EWM21964.1, cds8709 (CDS) Nannochloropsis gaditana

Overview
NameEWM21964.1
Unique Namecds8709
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:48044..48498 +
Alignment locationKK037250.1:48701..48941 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21964.1
Productcyclic nucleotide-binding protein
Orig transcript idgnl|cribi|Naga_102130g1.1341.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:48044..48498 +
KK037250.1supercontigKK037250.1:48701..48941 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|585102327|gb|EWM21964.1| (cyclic nucleotide-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 461.07 bits (1185), Expect = 5.528e-164
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MDTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSAWTTPWLNSTTTPTPRPPPPDPPSWPASPSSASSLPPSATSSSPLPPPSAVTCTSGATPASSPKRPPSLPPPLLPSRAGT 231
            MDTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSAWTTPWLNSTTTPTPRPPPPDPPSWPASPSSASSLPPSATSSSPLPPPSAVTCTSGATPASSPKRPPSLPPPLLPSRAGT
Sbjct:    1 MDTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSAWTTPWLNSTTTPTPRPPPPDPPSWPASPSSASSLPPSATSSSPLPPPSAVTCTSGATPASSPKRPPSLPPPLLPSRAGT 231          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|585105239|gb|EWM23953.1| (na+ h+ antiporter [Nannochloropsis gaditana])

HSP 1 Score: 106.301 bits (264), Expect = 1.032e-22
Identity = 57/147 (38.78%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    1 MDTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAI 147
            +D    LNEW  LE  I  PL A+R   RL R  ++       L  +LAF F LAV FI++H +  + L ++ G  GP T  LE+EV  E+  A+  +E ++P++P+  NSVKTE+A   +L   RS+LE + E G L +R +  A+
Sbjct:  839 LDPGCELNEWRTLEREIWIPLNALRLAKRLSRSAIIRPLANSFLFSRLAFLFGLAVNFIKAHRSLAEDLGKILGA-GPTTTILEQEVWREIEDAQRTIEMYLPIYPNTFNSVKTEIATSVVLQHFRSLLEESHEMGILHERRYHKAV 984          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|676382579|ref|XP_009034568.1| (hypothetical protein AURANDRAFT_22521, partial [Aureococcus anophagefferens] >gi|323455139|gb|EGB11008.1| hypothetical protein AURANDRAFT_22521, partial [Aureococcus anophagefferens])

HSP 1 Score: 87.4261 bits (215), Expect = 3.269e-16
Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = 0
Query:    2 DTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPL---------VGRAVQYLLGKKLAFFFELAVVFIQSHSNA-HKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSA 152
            D S PL+EW  LE H L+P      +ARL R+           V  +VQ ++ +++AF FE+A  FI +H +  H    E     GPV   L +EV +    AKA + E++ VFP+  N++KT++AA ++L +   +++ + E G +  +E  +  R ++A
Sbjct:  537 DESRPLDEWERLEAHDLWP------KARLSRIQYLNTYIPSERVRESVQGVIFRRMAFVFEVAYNFIHAHEDVEHALAAEEIVDAGPVQEALVEEVAKMQAMAKATIAEYIDVFPESANAIKTQVAASFVLVRQHELMKESREHGHITAKELGECERHINA 691          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|298713163|emb|CBJ26919.1| (Sodium/hydrogen exchanger family [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 9.075e-9
Identity = 47/143 (32.87%), Postives = 68/143 (47.55%), Query Frame = 0
Query:    2 DTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFE 144
            D+   L EWA L      P   +   + LR LP++G+ V   + KKLAF FELA  FI +H +    + EL    G    QL +E  +++  A   L   +P FP        E+AAR++L K R  +      G L ++E E
Sbjct:  872 DSYAALEEWARLRESFTIPEYQLNMASALRHLPIIGQIVGGWIFKKLAFVFELASNFIAAHEDI--DILELL-PEGDAANQLARENLKQLDDASGTLGHQLPAFP--------EVAARFLLAKHREFVHEMFLDGLLNEKEAE 1003          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|501491916|ref|WP_012500358.1| (cyclic nucleotide-binding protein [Chloroherpeton thalassium] >gi|193088999|gb|ACF14274.1| cyclic nucleotide-binding protein [Chloroherpeton thalassium ATCC 35110])

HSP 1 Score: 64.3142 bits (155), Expect = 2.491e-8
Identity = 41/149 (27.52%), Postives = 75/149 (50.34%), Query Frame = 0
Query:    2 DTSVPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREV 150
            D    L++W  LEH   FP        +L+  P++G+ V+  L  +LAF +++A  ++ +H    + L  +   +  V   L+ E+    G A  A+++    FP+I  +++T+ AAR +LN  R+ ++   E G L + E E  +  V
Sbjct:  547 DDEGSLDDWKELEHLWQFP----AILTKLQSFPVIGKMVRRTLYDRLAFGYDIARGYVVAHEEISETLESIIHDDA-VAMNLQVEMNYNRGIALGAIKKLRETFPEITMAIETKTAARLILNHERNSIKKMYEGGMLNEIEKERLVAAV 690          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|655137438|ref|WP_028584361.1| (hypothetical protein [Desulfobulbus mediterraneus])

HSP 1 Score: 61.6178 bits (148), Expect = 2.112e-7
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 0
Query:   30 LRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSAWTTPWLNSTTTPTPRPPPPD 172
            L R+PL+ R +  +   +LA  +++A  FI +  N++ K+ EL   +     +++ EV      A   +E+    FP++I +++T  A+R +LN+ R+ +E  ++ G L+K E +    EV       L+ T T    PPP D
Sbjct:  561 LERVPLLNRLLLSISFDRLALGYDVARGFIHA-MNSYPKMIELLDPSPQSAEEVQGEVLRNKRIAYERIEQLRQAFPEVIIALETRAASRSLLNRQRATIEGLLDDGLLDKAEADKMFDEVET-RLKQLHQTPTKIEVPPPRD 701          
BLAST of EWM21964.1 vs. NCBI_GenBank
Match: gi|298705240|emb|CBJ34146.1| (cyclic nucleotide-binding protein [Ectocarpus siliculosus])

HSP 1 Score: 60.077 bits (144), Expect = 3.468e-7
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   46 KKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSA 152
            ++L F FELA  FI +H +    + EL  + GPV  QL  E   ++  A++ L + +PVFP++  S+KT +AA+YML +   ++      G +  RE E  I E +A
Sbjct:    3 RRLMFIFELASNFISAHEDV--DILELLHE-GPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHPEVVHELFHHGHINDRESEGLIAENNA 106          
The following BLAST results are available for this feature:
BLAST of EWM21964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585102327|gb|EWM21964.1|5.528e-164100.00cyclic nucleotide-binding protein [Nannochloropsis... [more]
gi|585105239|gb|EWM23953.1|1.032e-2238.78na+ h+ antiporter [Nannochloropsis gaditana][more]
gi|676382579|ref|XP_009034568.1|3.269e-1632.30hypothetical protein AURANDRAFT_22521, partial [Au... [more]
gi|298713163|emb|CBJ26919.1|9.075e-932.87Sodium/hydrogen exchanger family [Ectocarpus silic... [more]
gi|501491916|ref|WP_012500358.1|2.491e-827.52cyclic nucleotide-binding protein [Chloroherpeton ... [more]
gi|655137438|ref|WP_028584361.1|2.112e-728.67hypothetical protein [Desulfobulbus mediterraneus][more]
gi|298705240|emb|CBJ34146.1|3.468e-735.51cyclic nucleotide-binding protein [Ectocarpus sili... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8738rna8738Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications