rna8727, rna8727 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8727
Unique Name	rna8727
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	838
Alignment location	KK037250.1:8450..9711 -

Link to JBrowse

Properties


Property Name	Value
Product	MD-2-related lipid-recognition protein
Orig transcript id	gnl\|cribi\|Naga_100720g2.4455.mrna
Orig protein id	gnl\|cribi\|Naga_100720g2.4455
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:8450..9711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100720g2	gene8458	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8727	rna8727-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21974.1	cds8698	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:8450..9711-
coding sequence from alignment at KK037250.1:8450..9711-

mRNA sequence

>rna8727 ID=rna8727|Name=rna8727|organism=Nannochloropsis gaditana|type=mRNA|length=838bp
CAAATCCTGGGAGGGTCGAGGCGGGGGGGGAGGAAGGGCGGGAGGGGGAG
GGGGAGGAAGGGGGGGAGGGAAGGGAGGGGACGAGAGCATTGACAAGTTC
CTTGAGTCGTTGGATTGGCCCTAAAGACAGGAGGAGCGATGAAGGAGGGA
AGTGGTCACCCTTGAAAGATTAGGGGAGAGACCAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGTATGAGAACTAAGGGGT
TGATGGATCACTGAAGGGAAGAGGAGGAAGAGGAGGAGGAAGCAAGAAAG
TCGGTCCAGTGATGGATCGGGAAGACAGTTAAGATGAGAAAGGAGGGGAG
AAAGGGCGAGGGGGGAGAAAAAGAGGATTCTTCCTGCTTGTGCAGTCGTA
CGGGCGGAAAGGAAGGAGGGAGGGAGGGAGGGAAGGGCAGGGAGGGACAG
AGGGAGGTTCTGTCGATGCGGGCGGCGACAAAGGCTGGTTGTGGTAAGGA
GGTGTCTGCCCCGCGGCGATGCAAGGAGAATCATCTCAGTCGTGTGGCAA
TCCCAGCCACATATTTTGAAGGCATAAAAGGGCATAATGGAGGGGCAAAA
AGACGAAGGTTGAAGGGGATGGGGAGGGGAAGAGGAGGGAAGAAGGCTGT
GAATGGGACCATGAGGTTTGGGAGGACGCATGGGAGGGAGGGAGGGGGAG
AAGGAGGAGTGCCCTCGCATACTTCGTCATCAGTACTATACGATGTGAAT
GGGAGGGGCAAGAAGGCTCAATAGTGATATTTTCCATGTAAGCACATCAA
TGAGCACGAAATCAAAAACGGACCGCTTCGTCGCAACT

protein sequence of rna8727

>rna8727-protein ID=rna8727-protein|Name=rna8727|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MKCLDHETRLNKPNDRRAQVILVEEKKVMRLLPRLFYVAIPLFWSLLPYV
ISEDHLLPFKLCGPDELGVEVIRLNAWPLVPGRELTITAIYTPNVTVTGG
EALVTVHVLGIPLTERRAICHESGVHCPLLLHHSTTSVIHAHVPGLTPGF
GVDARVELFDGRGRRLTCLDARVEVRTHPLIGVPSWSKPSLALSPTLSPD
SPTTTPFASSSSPVVSSLSSLLSSLPAQSAAVALSSTEDGTTGIKQALDQ
FIKLRHQDFAVEAQEPRDESTSDRNGPLREDHGDRIRLRRE

mRNA from alignment at KK037250.1:8450..9711-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8727 ID=rna8727|Name=rna8727|organism=Nannochloropsis gaditana|type=mRNA|length=1262bp|location=Sequence derived from alignment at KK037250.1:8450..9711- (Nannochloropsis gaditana)
ATGGTTCAAGAATGTGCAAAGGCGGAAAGCAAAGGACGTGGAGAATCTCC
CGACACGATCCTTAGTATAGAAATGCCTCGATCACGAAACACGTCTAAAT
AAGCCTAACGAGTGAGTGCCGGCCTGGAAAAACAGTACATATTGTTTGTA
TCCTGTTGATTGTAAATGAGGGGTCTATGTTCTGCGCAATGTAGACCAAT
TGCCATACATTCTTTTTCACATATTCTTTCCAGTCGTCGGGCACAGGTAA
TTCTTGTAGAAGAAAAAAAGGTCATGCGGCTTCTTCCCCGCCTTTTCTAC
GTGGCAATTCCATTATTTTGGAGCTTGCTTCCTTATGTCATATCGGAGGA
TCACCTTCTCCCCTTCAAGCTCTGCGGACCCGATGAGTTGGGTGTCGAGG
TGATCCGCCTGAACGCCTGGCCGCTGGTCCCTGGGAGGGAATTGACCATC
ACCGCCATCTACACTCCGAATGTGACGGTGACGGGGGGAGAAGCGCTGGT
AACAGGTGCATTTAAGGAAGCAAGATAGGCTCAAGGGAAAAGGGGGGAAT
CAGACGTTAATGAGAATTTGTTTTGACCAGGTTGCGATGGAGATCAATTG
TACACCGTGGTAAATAGCGACACACATCGCACAAACGAGGCTTTTCCCCA
TGCCCTGGCACTGTTTTCACTCTCGCACTCTCTCCCTTCCTTCATTCCGC
AGTGCACGTGCTCGGGATTCCCCTGACCGAGAGACGTGCGATCTGCCACG
AGTCCGGTGTGCACTGTCCCCTCCTGCTGCATCACTCCACAACCTCCGTC
ATCCATGCCCACGTCCCGGGTCTCACGCCAGGCTTCGGAGTGGACGCACG
TGTTGAATTGTTTGATGGGAGGGGTAGACGGTTGACTTGCCTGGACGCGC
GGGTGGAGGTCCGCACCCACCCCTTGATCGGAGTACCTAGCTGGTCGAAA
CCCTCCTTGGCTTTGTCGCCCACCTTGTCTCCCGATTCCCCCACCACCAC
CCCCTTCGCTTCCTCATCTTCGCCCGTAGTTTCCTCTCTCTCCTCGTTGC
TTTCGTCCCTGCCTGCGCAGTCGGCAGCAGTGGCTTTGAGCTCTACAGAG
GATGGCACCACAGGAATCAAACAAGCGTTGGATCAGTTTATAAAATTGAG
ACATCAGGACTTCGCAGTTGAGGCGCAGGAACCAAGAGACGAAAGCACAA
GCGATAGAAATGGACCATTACGTGAGGATCATGGGGACAGGATACGCTTG
CGAAGGGAGTGA

Coding sequence (CDS) from alignment at KK037250.1:8450..9711-

>rna8727 ID=rna8727|Name=rna8727|organism=Nannochloropsis gaditana|type=CDS|length=3504bp|location=Sequence derived from alignment at KK037250.1:8450..9711- (Nannochloropsis gaditana)
TGCACGTGCTCGGGATTCCCCTGACCGAGAGACGTGCGATCTGCCACGAG
TCCGGTGTGCACTGTCCCCTCCTGCTGCATCACTCCACAACCTCCGTCAT
CCATGCCCACGTCCCGGGTCTCACGCCAGGCTTCGGAGTGGACGCACGTG
TTGAATTGTTTGATGGGAGGGGTAGACGGTTGACTTGCCTGGACGCGCGG
GTGGAGGTCCGCACCCACCCCTTGATCGGAGTACCTAGCTGGTCGAAACC
CTCCTTGGCTTTGTCGCCCACCTTGTCTCCCGATTCCCCCACCACCACCC
CCTTCGCTTCCTCATCTTCGCCCGTAGTTTCCTCTCTCTCCTCGTTGCTT
TCGTCCCTGCCTGCGCAGTCGGCAGCAGTGGCTTTGAGCTCTACAGAGGA
TGGCACCACAGGAATCAAACAAGCGTTGGATCAGTTTATAAAATTGAGAC
ATCAGGACTTCGCAGTTGAGGCGCAGGAACCAAGAGACGAAAGCACAAGC
GATAGAAATGGACCATTACGTGAGGATCATGGGGACAGGATACGCTTGCG
AAGGGAGTGATCGTCGGGCACAGGTAATTCTTGTAGAAGAAAAAAAGGTC
ATGCGGCTTCTTCCCCGCCTTTTCTACGTGGCAATTCCATTATTTTGGAG
CTTGCTTCCTTATGTCATATCGGAGGATCACCTTCTCCCCTTCAAGCTCT
GCGGACCCGATGAGTTGGGTGTCGAGGTGATCCGCCTGAACGCCTGGCCG
CTGGTCCCTGGGAGGGAATTGACCATCACCGCCATCTACACTCCGAATGT
GACGGTGACGGGGGGAGAAGCGCTGGTAACAGAAATGCCTCGATCACGAA
ACACGTCTAAATAAGCCTAACGAATGTGCACGTGCTCGGGATTCCCCTGA
CCGAGAGACGTGCGATCTGCCACGAGTCCGGTGTGCACTGTCCCCTCCTG
CTGCATCACTCCACAACCTCCGTCATCCATGCCCACGTCCCGGGTCTCAC
GCCAGGCTTCGGAGTGGACGCACGTGTTGAATTGTTTGATGGGAGGGGTA
GACGGTTGACTTGCCTGGACGCGCGGGTGGAGGTCCGCACCCACCCCTTG
ATCGGAGTACCTAGCTGGTCGAAACCCTCCTTGGCTTTGTCGCCCACCTT
GTCTCCCGATTCCCCCACCACCACCCCCTTCGCTTCCTCATCTTCGCCCG
TAGTTTCCTCTCTCTCCTCGTTGCTTTCGTCCCTGCCTGCGCAGTCGGCA
GCAGTGGCTTTGAGCTCTACAGAGGATGGCACCACAGGAATCAAACAAGC
GTTGGATCAGTTTATAAAATTGAGACATCAGGACTTCGCAGTTGAGGCGC
AGGAACCAAGAGACGAAAGCACAAGCGATAGAAATGGACCATTACGTGAG
GATCATGGGGACAGGATACGCTTGCGAAGGGAGTGATCGTCGGGCACAGG
TAATTCTTGTAGAAGAAAAAAAGGTCATGCGGCTTCTTCCCCGCCTTTTC
TACGTGGCAATTCCATTATTTTGGAGCTTGCTTCCTTATGTCATATCGGA
GGATCACCTTCTCCCCTTCAAGCTCTGCGGACCCGATGAGTTGGGTGTCG
AGGTGATCCGCCTGAACGCCTGGCCGCTGGTCCCTGGGAGGGAATTGACC
ATCACCGCCATCTACACTCCGAATGTGACGGTGACGGGGGGAGAAGCGCT
GGTAACAGAAATGCCTCGATCACGAAACACGTCTAAATAAGCCTAACGAA
TGTGCACGTGCTCGGGATTCCCCTGACCGAGAGACGTGCGATCTGCCACG
AGTCCGGTGTGCACTGTCCCCTCCTGCTGCATCACTCCACAACCTCCGTC
ATCCATGCCCACGTCCCGGGTCTCACGCCAGGCTTCGGAGTGGACGCACG
TGTTGAATTGTTTGATGGGAGGGGTAGACGGTTGACTTGCCTGGACGCGC
GGGTGGAGGTCCGCACCCACCCCTTGATCGGAGTACCTAGCTGGTCGAAA
CCCTCCTTGGCTTTGTCGCCCACCTTGTCTCCCGATTCCCCCACCACCAC
CCCCTTCGCTTCCTCATCTTCGCCCGTAGTTTCCTCTCTCTCCTCGTTGC
TTTCGTCCCTGCCTGCGCAGTCGGCAGCAGTGGCTTTGAGCTCTACAGAG
GATGGCACCACAGGAATCAAACAAGCGTTGGATCAGTTTATAAAATTGAG
ACATCAGGACTTCGCAGTTGAGGCGCAGGAACCAAGAGACGAAAGCACAA
GCGATAGAAATGGACCATTACGTGAGGATCATGGGGACAGGATACGCTTG
CGAAGGGAGTGATCGTCGGGCACAGGTAATTCTTGTAGAAGAAAAAAAGG
TCATGCGGCTTCTTCCCCGCCTTTTCTACGTGGCAATTCCATTATTTTGG
AGCTTGCTTCCTTATGTCATATCGGAGGATCACCTTCTCCCCTTCAAGCT
CTGCGGACCCGATGAGTTGGGTGTCGAGGTGATCCGCCTGAACGCCTGGC
CGCTGGTCCCTGGGAGGGAATTGACCATCACCGCCATCTACACTCCGAAT
GTGACGGTGACGGGGGGAGAAGCGCTGGTAACAGAAATGCCTCGATCACG
AAACACGTCTAAATAAGCCTAACGAATGTGCACGTGCTCGGGATTCCCCT
GACCGAGAGACGTGCGATCTGCCACGAGTCCGGTGTGCACTGTCCCCTCC
TGCTGCATCACTCCACAACCTCCGTCATCCATGCCCACGTCCCGGGTCTC
ACGCCAGGCTTCGGAGTGGACGCACGTGTTGAATTGTTTGATGGGAGGGG
TAGACGGTTGACTTGCCTGGACGCGCGGGTGGAGGTCCGCACCCACCCCT
TGATCGGAGTACCTAGCTGGTCGAAACCCTCCTTGGCTTTGTCGCCCACC
TTGTCTCCCGATTCCCCCACCACCACCCCCTTCGCTTCCTCATCTTCGCC
CGTAGTTTCCTCTCTCTCCTCGTTGCTTTCGTCCCTGCCTGCGCAGTCGG
CAGCAGTGGCTTTGAGCTCTACAGAGGATGGCACCACAGGAATCAAACAA
GCGTTGGATCAGTTTATAAAATTGAGACATCAGGACTTCGCAGTTGAGGC
GCAGGAACCAAGAGACGAAAGCACAAGCGATAGAAATGGACCATTACGTG
AGGATCATGGGGACAGGATACGCTTGCGAAGGGAGTGATCGTCGGGCACA
GGTAATTCTTGTAGAAGAAAAAAAGGTCATGCGGCTTCTTCCCCGCCTTT
TCTACGTGGCAATTCCATTATTTTGGAGCTTGCTTCCTTATGTCATATCG
GAGGATCACCTTCTCCCCTTCAAGCTCTGCGGACCCGATGAGTTGGGTGT
CGAGGTGATCCGCCTGAACGCCTGGCCGCTGGTCCCTGGGAGGGAATTGA
CCATCACCGCCATCTACACTCCGAATGTGACGGTGACGGGGGGAGAAGCG
CTGGTAACAGAAATGCCTCGATCACGAAACACGTCTAAATAAGCCTAACG
AATG

Synonyms

Publications