rna8723, rna8723 (mRNA) Nannochloropsis gaditana

Overview
Namerna8723
Unique Namerna8723
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length392
Alignment locationKK037250.1:45..935 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101510g1.2165.mrna
Orig protein idgnl|cribi|Naga_101510g1.2165
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:45..935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101510g1gene8454Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8723rna8723-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21979.1cds8694Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8723 ID=rna8723|Name=rna8723|organism=Nannochloropsis gaditana|type=mRNA|length=392bp
AAGGACACATGTTTCCGTACTGATGAGCGTTATCGTTTTCTTAATTTTCA
CGTAGCACCATAGCATGCGGCAGTTTGTGGCTGCCCCTGCGGCACGGCAC
AGATCCAATGCAGGGCCATGGTTTTTCCTTCGACGTTCGCTTGTGCCTCT
CCTTCTGCTTGCTGGTAGCATCAGTCTATATATTTCCCCTCAGTCCCGTG
CTTTAATGGCTAGGACGGTAGCCAATAATGCGAGCGGGGTAATGATTGCG
GGGTTATGGCCGTTCCGTGTCTTCATCTTTGCGCGGGGGGAGGGTGTATC
GGGAAAGGCGGAAAACCCTGCATCCATGGAGGAAGGGAAGCCGTCGGACG
GATACGACAAGCAGTCCATACCTCCTGAACATCTTGCCTCCC
back to top

protein sequence of rna8723

>rna8723-protein ID=rna8723-protein|Name=rna8723|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MPSQGRERWEAKPLLGRFFFPAAASFIVLEMKLVMNAEVAAKHPLASRTQ
AKTKIHISSVLFFLLLSQLCYSQIDAFVGLVRFSGLWRAEPLPCVSFRST
PPPARW
back to top

mRNA from alignment at KK037250.1:45..935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8723 ID=rna8723|Name=rna8723|organism=Nannochloropsis gaditana|type=mRNA|length=891bp|location=Sequence derived from alignment at KK037250.1:45..935- (Nannochloropsis gaditana)
ATGCCTTCGTGATGACAAAGGGCATGTCAAAAAGCCTAAAATACTGAGGC
CAAAGCCATTGCAACAATGGAAGCTATCGCATTTGACCGCTCTACGCTCG
TAGAACAATGAGAAAAGGATGTGAAAAGCAGGCTTTGTGTACAACACGTC
CAGCGTTCTCCTTTTTTTTCCCGTTCGTGTTCCAATCGCCTCCGCAGCTC
GGTTACTTGCTTGTGTGCACTTCAGTCGCTGACTACCATCTTCTCCTCCC
CTTCTAACTTTAAAATTTGCCGCGTTTTTGACTTCCCATTCTCTTCCCTC
ACCACCTCCAGGCAAGGGAGGGAGCGCTGGGAGGCAAAGCCACTCCTGGG
TCGATTCTTTTTCCCTGCCGCTGCAAGTTTCATTGTTCTCGAGATGAAGC
TCGTCATGAACGCCGAAGTTGCAGCGAAGCATCCTTTAGCATCTCGGACG
CAGGCGAAAACGAAGATCCACATCTCCAGCGTCCTTTTCTTTCTCCTCCT
TTCACAATTATGTTACTCTCAAATTGATGCCTTTGTGGGTCTCGTGAGGT
TTTCTGGACTATGGAGGGCGGAGCCGCTGCCGTGTGTCAGGTGCGTCGGC
GAAGCAGTGGAGATCCTGTCAAGCGTGGAAAGGAAATAAATCGCCTTGTA
GCACACTGTGTTCCGCGTGAAAATCTTTCAAACTCGGCAGCAATTTGATG
CTTCGTTCGGTGTGTGGTAAACTGGGAAAAAATCAGCCGCTTTGTGTCCT
TGTTCTTCTTACCTCCTTCCTTCCCTCCGTCCCTCCCTCCCTCCCTCCCA
CCCCTAGCTTTCGATCTACACCCCCCCCCGCTCGGTGGTGACGATGGCCA
AAGACTTTCGGAACATGGACGCGGGGACGCGCAAGACCAGG
back to top

Coding sequence (CDS) from alignment at KK037250.1:45..935-

>rna8723 ID=rna8723|Name=rna8723|organism=Nannochloropsis gaditana|type=CDS|length=963bp|location=Sequence derived from alignment at KK037250.1:45..935- (Nannochloropsis gaditana)
CTTTCGATCTACACCCCCCCCCGCTCGGTGGTGAGCAAGGGAGGGAGCGC
TGGGAGGCAAAGCCACTCCTGGGTCGATTCTTTTTCCCTGCCGCTGCAAG
TTTCATTGTTCTCGAGATGAAGCTCGTCATGAACGCCGAAGTTGCAGCGA
AGCATCCTTTAGCATCTCGGACGCAGGCGAAAACGAAGATCCACATCTCC
AGCGTCCTTTTCTTTCTCCTCCTTTCACAATTATGTTACTCTCAAATTGA
TGCCTTTGTGGGTCTCGTGAGGTTTTCTGGACTATGGAGGGCGGAGCCGC
TGCCGTGTGTCAGATGCCTTCCTTTCGATCTACACCCCCCCCCGCTCGGT
GGTGAGCAAGGGAGGGAGCGCTGGGAGGCAAAGCCACTCCTGGGTCGATT
CTTTTTCCCTGCCGCTGCAAGTTTCATTGTTCTCGAGATGAAGCTCGTCA
TGAACGCCGAAGTTGCAGCGAAGCATCCTTTAGCATCTCGGACGCAGGCG
AAAACGAAGATCCACATCTCCAGCGTCCTTTTCTTTCTCCTCCTTTCACA
ATTATGTTACTCTCAAATTGATGCCTTTGTGGGTCTCGTGAGGTTTTCTG
GACTATGGAGGGCGGAGCCGCTGCCGTGTGTCAGATGCCTTCCTTTCGAT
CTACACCCCCCCCCGCTCGGTGGTGAGCAAGGGAGGGAGCGCTGGGAGGC
AAAGCCACTCCTGGGTCGATTCTTTTTCCCTGCCGCTGCAAGTTTCATTG
TTCTCGAGATGAAGCTCGTCATGAACGCCGAAGTTGCAGCGAAGCATCCT
TTAGCATCTCGGACGCAGGCGAAAACGAAGATCCACATCTCCAGCGTCCT
TTTCTTTCTCCTCCTTTCACAATTATGTTACTCTCAAATTGATGCCTTTG
TGGGTCTCGTGAGGTTTTCTGGACTATGGAGGGCGGAGCCGCTGCCGTGT
GTCAGATGCCTTC
back to top
Synonyms
Publications