rna8719, rna8719 (mRNA) Nannochloropsis gaditana

Overview
Namerna8719
Unique Namerna8719
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationKK037249.1:652213..653205 +

Link to JBrowse

Properties
Property NameValue
Productammonium transporter
Orig transcript idgnl|cribi|Naga_102173g1.1131.mrna
Orig protein idgnl|cribi|Naga_102173g1.1131
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:652213..653205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102173g1gene8450Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8719rna8719-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21983.1cds8690Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8719 ID=rna8719|Name=rna8719|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGCATCCAGCAGGCTCATGCCGTGTCGCAAAACTCTTCCAACCATCCTT
CCGACACCTCTTCGCCTTCTGCCTCTATCCATCGGACGAACGGAGGCATG
AACAAGGGTCCCAGCCCGCCCACCACCCTCCCTACGAAACCCTCCGGCGT
CAAGAGCATTCTGACCGCTGCCCAAGTGAAGATGCAGCAGGCATATACTG
A
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protein sequence of rna8719

>rna8719-protein ID=rna8719-protein|Name=rna8719|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVG
FSLAYGETVGHVIGNPSTFFLYRGVGAQPLKTVPSRNASLTCLTCASSSS
SPSSSTAPLSMRSGIPKVSFDSGVSWTSREA
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mRNA from alignment at KK037249.1:652213..653205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8719 ID=rna8719|Name=rna8719|organism=Nannochloropsis gaditana|type=mRNA|length=993bp|location=Sequence derived from alignment at KK037249.1:652213..653205+ (Nannochloropsis gaditana)
tcccttccatcctccctccctccctccgtccctcagGATGCTGACCTGCA
CGGCCCTGGTCCTCCTGATGACGCCCGGCCTCGCCTTTTTCTACGGGGGG
ATGGTGGACAAGAAGAACATTCTCTACACCATGTTCCAATCCATCTCGGC
CATCGCCATGGTCACGTGCCTGTGGACCTTCGTGGGGTGAGGGCcagaga
gaagagaggaaaaccTATCCTTTCTCggtctttttttttttcagaAAAAG
ATGGCgtgcctttttctcccttcctttttccctctgctacccttcctccc
cccttttctccttttcttcctcgcatgatttcttcctcgccccctccctt
cttcctccttaacctcccccctctctccgcctccctctttcctccagctt
ctccctcgcctacGGCGAAACCGTCGGCCACGTCATCGGCAATCCCAGCA
CCTTCTTTCTCTATCGAGGCGTGGGCGCGCAGCCTTTGaagagtgaggaa
ggagggatggagggggggagggagggagggagagggaaggtccTAAGGGG
GGAATCGTGTATTCATCTCTACGTGCGCTGacttcgctccctccctcctg
ccctccctccctccctccctttctcctcaagACTTTGGTGACACCATCCC
CCTCGgacttttctccctcttcgagtTGAAGTTCGCGATCATCACCCCTC
CCATCATTAGCGGTGCCTTCACGGAACGCATCTCTTACTTGCCTTACATG
tgcttcgtcgtcctcttctccatcttcgTCTACTGCCCCATTGtaggccc
gccctccctcccgccctccctctttccctcctccccttcctttctccctt
cttcccttcctctttcccttcctcacgtctccgccacccccgccttccct
ccctccctccctccctccctcaggtccATGCGGTCTGGCATCCCGAAGGT
TTCCTTCGACAGTGGGGTGTCTTGGACTTCGCGGGAGGCTTAG
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Coding sequence (CDS) from alignment at KK037249.1:652213..653205+

>rna8719 ID=rna8719|Name=rna8719|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at KK037249.1:652213..653205+ (Nannochloropsis gaditana)
ATGCTGACCTGCACGGCCCTGGTCCTCCTGATGACGCCCGGCCTCGCCTT
TTTCTACGGGGGGATGGTGGACAAGAAGAACATTCTCTACACCATGTTCC
AATCCATCTCGGCCATCGCCATGGTCACGTGCCTGTGGACCTTCGTGGGc
ttctccctcgcctacGGCGAAACCGTCGGCCACGTCATCGGCAATCCCAG
CACCTTCTTTCTCTATCGAGGCGTGGGCGCGCAGCCTTTGaagaCGGTGC
CTTCACGGAACGCATCTCTTACTTGCCTTACATGtgcttcgtcgtcctct
tctccatcttcgTCTACTGCCCCATTgtccATGCGGTCTGGCATCCCGAA
GGTTTCCTTCGACAGTGGGGTGTCTTGGACTTCGCGGGAGGCTTAGATGC
TGACCTGCACGGCCCTGGTCCTCCTGATGACGCCCGGCCTCGCCTTTTTC
TACGGGGGGATGGTGGACAAGAAGAACATTCTCTACACCATGTTCCAATC
CATCTCGGCCATCGCCATGGTCACGTGCCTGTGGACCTTCGTGGGcttct
ccctcgcctacGGCGAAACCGTCGGCCACGTCATCGGCAATCCCAGCACC
TTCTTTCTCTATCGAGGCGTGGGCGCGCAGCCTTTGaagaCGGTGCCTTC
ACGGAACGCATCTCTTACTTGCCTTACATGtgcttcgtcgtcctcttctc
catcttcgTCTACTGCCCCATTgtccATGCGGTCTGGCATCCCGAAGGTT
TCCTTCGACAGTGGGGTGTCTTGGACTTCGCGGGAGGCTTAGATGCTGAC
CTGCACGGCCCTGGTCCTCCTGATGACGCCCGGCCTCGCCTTTTTCTACG
GGGGGATGGTGGACAAGAAGAACATTCTCTACACCATGTTCCAATCCATC
TCGGCCATCGCCATGGTCACGTGCCTGTGGACCTTCGTGGGcttctccct
cgcctacGGCGAAACCGTCGGCCACGTCATCGGCAATCCCAGCACCTTCT
TTCTCTATCGAGGCGTGGGCGCGCAGCCTTTGaagaCGGTGCCTTCACGG
AACGCATCTCTTACTTGCCTTACATGtgcttcgtcgtcctcttctccatc
ttcgTCTACTGCCCCATTgtccATGCGGTCTGGCATCCCGAAGGTTTCCT
TCGACAGTGGGGTGTCTTGGACTTCGCGGGAGGCTTAGATGCTGACCTGC
ACGGCCCTGGTCCTCCTGATGACGCCCGGCCTCGCCTTTTTCTACGGGGG
GATGGTGGACAAGAAGAACATTCTCTACACCATGTTCCAATCCATCTCGG
CCATCGCCATGGTCACGTGCCTGTGGACCTTCGTGGGcttctccctcgcc
tacGGCGAAACCGTCGGCCACGTCATCGGCAATCCCAGCACCTTCTTTCT
CTATCGAGGCGTGGGCGCGCAGCCTTTGaagaCGGTGCCTTCACGGAACG
CATCTCTTACTTGCCTTACATGtgcttcgtcgtcctcttctccatcttcg
TCTACTGCCCCATTgtccATGCGGTCTGGCATCCCGAAGGTTTCCTTCGA
CAGTGGGGTGTCTTGGACTTCGCGGGAGGCTTAG
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Synonyms
Publications