EWM21983.1, cds8690 (CDS) Nannochloropsis gaditana

Overview
NameEWM21983.1
Unique Namecds8690
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:652250..652398 +
Alignment locationKK037249.1:652610..652704 +
Alignment locationKK037249.1:652923..653004 +
Alignment locationKK037249.1:653136..653205 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21983.1
Productammonium transporter
Orig transcript idgnl|cribi|Naga_102173g1.1131.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:652250..652398 +
KK037249.1supercontigKK037249.1:652610..652704 +
KK037249.1supercontigKK037249.1:652923..653004 +
KK037249.1supercontigKK037249.1:653136..653205 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0072488ammonium transmembrane transport
GO:0015696ammonium transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0008519ammonium transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001905Ammonium_transpt
IPR024041NH4_transpt_AmtB-like_dom
IPR029020Ammonium/urea_transptr
Homology
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|585102366|gb|EWM21983.1| (ammonium transporter [Nannochloropsis gaditana])

HSP 1 Score: 265.003 bits (676), Expect = 8.630e-90
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQPLKTVPSRNASLTCLTCASSSSSPSSSTAPLSMRSGIPKVSFDSGVSWTSREA 131
            MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQPLKTVPSRNASLTCLTCASSSSSPSSSTAPLSMRSGIPKVSFDSGVSWTSREA
Sbjct:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQPLKTVPSRNASLTCLTCASSSSSPSSSTAPLSMRSGIPKVSFDSGVSWTSREA 131
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1123627440|ref|WP_074318028.1| (ammonium transporter [Singulisphaera sp. GP187] >gi|1119027417|emb|SIO67899.1| ammonium transporter [Singulisphaera sp. GP187])

HSP 1 Score: 110.538 bits (275), Expect = 5.524e-26
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQPLKTV 83
            MLT  ALVLLMTPGL+FFYGGMV  KN++ TM QS+ A+ +++ LW FVGFSLA+G+++G VIGNP TFF++ GVG    KT+
Sbjct:   43 MLTAAALVLLMTPGLSFFYGGMVGFKNVVSTMLQSVVALGVISLLWVFVGFSLAFGDSIGGVIGNPMTFFMFDGVGEATHKTL 125
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1176526779|ref|WP_082353775.1| (ammonium transporter [bacterium 336/3] >gi|927344179|gb|KOY87607.1| ammonia channel protein [bacterium 336/3])

HSP 1 Score: 106.686 bits (265), Expect = 1.315e-24
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQ 78
            MLT T LVLLMTPGLAFFYGGMV KK+++ TM QS  A+ +++ +W FVGFSLA+G++VG  IGNP TF +++GVG Q
Sbjct:   56 MLTATGLVLLMTPGLAFFYGGMVGKKSVISTMLQSFIAMGVISLVWVFVGFSLAFGDSVGGFIGNPFTFMMFKGVGTQ 133
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|809058011|ref|WP_046313424.1| (ammonium transporter [Pontibacter korlensis])

HSP 1 Score: 106.301 bits (264), Expect = 1.665e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGV 75
            MLT TALVL+MTPGLAFFYGGMV KKN+L TM QS   +A+VT LW   GFSLA+GE++G V GNP TFF+ +GV
Sbjct:   45 MLTATALVLIMTPGLAFFYGGMVRKKNVLSTMLQSFICMAIVTVLWVVFGFSLAFGESIGGVFGNPLTFFMMKGV 119
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1054634377|ref|WP_066402062.1| (ammonium transporter [Flavisolibacter sp. LCS9] >gi|1028466996|gb|ANE49916.1| ammonia channel protein [Flavisolibacter sp. LCS9])

HSP 1 Score: 106.301 bits (264), Expect = 1.673e-24
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGV-GAQPLKTVPS 85
            MLT TALVL+MTPGLAFFYGGMV +KN+L TM QS   + ++T LW  VGFSLA+G+++G +IGNPS+FF+ +GV    P K  P+
Sbjct:   60 MLTATALVLIMTPGLAFFYGGMVSRKNVLSTMLQSFICMVVITVLWVTVGFSLAFGDSIGGIIGNPSSFFMMKGVMEGAPWKLAPT 145
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1160843226|ref|WP_079688802.1| (ammonia channel protein [Ohtaekwangia koreensis] >gi|1154452287|emb|SKC82757.1| ammonium transporter, Amt family [Ohtaekwangia koreensis])

HSP 1 Score: 105.916 bits (263), Expect = 2.163e-24
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGV-GAQPLKTVPS 85
            ML  +ALVLLMTPGLAFFYGGM+D KNI+YTMFQS  A+ +V  LW  VGFSLA+G+++G +IG+P +FF+++ V   +P    P+
Sbjct:   41 MLAASALVLLMTPGLAFFYGGMIDVKNIIYTMFQSFIAMGVVGVLWIVVGFSLAFGDSIGGLIGDPRSFFMFQNVMDGKPWSLAPT 126
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1101433979|gb|OIQ30866.1| (ammonia channel protein [Bacteroidetes bacterium MedPE-SWsnd-G2])

HSP 1 Score: 105.531 bits (262), Expect = 2.636e-24
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGAQP 79
            M+  +A VLLMTPGL+FFYGGMV KKNI+ TM QS  A+ +++ LW  VGFSLA+GE++G +IGNP T+F ++ VG++P
Sbjct:   39 MIVASAFVLLMTPGLSFFYGGMVSKKNIISTMLQSFIALGVISILWVVVGFSLAFGESIGGIIGNPFTYFAFKNVGSEP 117
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1055397016|ref|WP_067059860.1| (ammonium transporter [Mucilaginibacter sp. L294])

HSP 1 Score: 105.531 bits (262), Expect = 3.679e-24
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGV 75
            ML  TALVL+MTPGLAFFYGGMV+KKN++ TM QSI  + ++T LW   GFSLA+G+++G VIGNPSTFF+ +G+
Sbjct:   41 MLMSTALVLIMTPGLAFFYGGMVNKKNVISTMLQSIVCMVIITVLWGIFGFSLAFGDSIGGVIGNPSTFFMMKGM 115
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|737597051|ref|WP_035567734.1| (ammonium transporter [Hymenobacter sp. IS2118])

HSP 1 Score: 105.145 bits (261), Expect = 4.187e-24
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGV-GAQPLKTVPS 85
            ML  TALVLLMTPGLAFFYGGMV+ KN++ TM QS  A+ +++ LW  VGFSLA+G+++G  +G+P TFFL+RGV   +P    P+
Sbjct:   42 MLCATALVLLMTPGLAFFYGGMVNTKNVISTMLQSFVAMGIISLLWVVVGFSLAFGDSIGGFVGDPRTFFLFRGVLDGKPWSLAPT 127
[Close]
BLAST of EWM21983.1 vs. NCBI_GenBank
Match: gi|1085260012|gb|OGU40435.1| (ammonia channel protein [Ignavibacteria bacterium GWA2_36_19] >gi|1085269386|gb|OGU48996.1| ammonia channel protein [Ignavibacteria bacterium GWC2_35_8] >gi|1085279136|gb|OGU57641.1| ammonia channel protein [Ignavibacteria bacterium GWF2_35_20] >gi|1085306211|gb|OGU82107.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYA2_FULL_35_9] >gi|1085308874|gb|OGU84461.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYA12_FULL_35_25] >gi|1085311212|gb|OGU86637.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYC12_FULL_35_11] >gi|1085320427|gb|OGU95286.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYB12_FULL_35_14] >gi|1085324383|gb|OGU98869.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYC2_FULL_35_16] >gi|1085328364|gb|OGV02425.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYB2_FULL_35_12] >gi|1085359114|gb|OGV30828.1| ammonia channel protein [Ignavibacteria bacterium RIFOXYD12_FULL_36_8])

HSP 1 Score: 104.76 bits (260), Expect = 5.048e-24
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:    1 MLTCTALVLLMTPGLAFFYGGMVDKKNILYTMFQSISAIAMVTCLWTFVGFSLAYGETVGHVIGNPSTFFLYRGVGA--QPL--KTVP 84
            MLT T LVLLMTPGL++FYGGMV  KNI+ TM QS+ A+++++ +W  VGFSLA+G+++G VIGNP T+F++RGV     PL   TVP
Sbjct:   25 MLTATGLVLLMTPGLSYFYGGMVSSKNIISTMLQSVIAMSVISLMWVVVGFSLAFGDSIGGVIGNPLTYFMFRGVDGDTHPLLSPTVP 112
The following BLAST results are available for this feature:
BLAST of EWM21983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102366|gb|EWM21983.1|8.630e-90100.00ammonium transporter [Nannochloropsis gaditana][more]
gi|1123627440|ref|WP_074318028.1|5.524e-2661.45ammonium transporter [Singulisphaera sp. GP187] >g... [more]
gi|1176526779|ref|WP_082353775.1|1.315e-2462.82ammonium transporter [bacterium 336/3] >gi|9273441... [more]
gi|809058011|ref|WP_046313424.1|1.665e-2468.00ammonium transporter [Pontibacter korlensis][more]
gi|1054634377|ref|WP_066402062.1|1.673e-2459.30ammonium transporter [Flavisolibacter sp. LCS9] >g... [more]
gi|1160843226|ref|WP_079688802.1|2.163e-2456.98ammonia channel protein [Ohtaekwangia koreensis] >... [more]
gi|1101433979|gb|OIQ30866.1|2.636e-2458.23ammonia channel protein [Bacteroidetes bacterium M... [more]
gi|1055397016|ref|WP_067059860.1|3.679e-2464.00ammonium transporter [Mucilaginibacter sp. L294][more]
gi|737597051|ref|WP_035567734.1|4.187e-2456.98ammonium transporter [Hymenobacter sp. IS2118][more]
gi|1085260012|gb|OGU40435.1|5.048e-2457.95ammonia channel protein [Ignavibacteria bacterium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8719rna8719Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications