rna8718, rna8718 (mRNA) Nannochloropsis gaditana

Overview
Namerna8718
Unique Namerna8718
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1785
Alignment locationKK037249.1:651251..651880 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100745g1.10544.mrna
Orig protein idgnl|cribi|Naga_100745g1.10544
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:651251..651880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100745g1gene8449Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8718rna8718-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21986.1cds8689Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8718 ID=rna8718|Name=rna8718|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp
TTGCGCCAATTCCGACACGTCCAGAAAAATGGAATGATAATACAGAATTT
ATCTTATGCTAAAAATAATCTTGGCAAACATGGCTGTATTTGCTTAAAGG
CATCGCAGTCCATAATTCTTGCCCAACAATGCAAAAGTAGCCTGTTGCTA
AGGTGATCCTATGCTTATCTCATTTCTTACCTAGCGTTTTGTGATATCGT
AGAGTAAGCAAACAACATAATATCCACGAAAAATCATTATTTTTTTTGGA
TCAAATGCAGTTTGAAGCTCTTAATACCGCACTCATCCGCTTTCCCGAAC
AGAAGGCGACGGACAGACGTATACCAATATGAAAACCTTCTCCGTGCATC
TGGTCCTGCTTGCGACTTTCGCTGCCACCACTTGCCGCAACACTCATGCA
CAACCGGTAGTGACATTTGATTCCCCACCCAGCCCTGCCCCGGTCACGGA
CTCTCCCACTTCTATTCCCTCTGCAACCCCGACAACCACACCCTCCGCCT
CTCCCACGGCCTCGCCTACAGCCACTCCCTCTGCAGCACCGACAAATACA
CCAACAAACACACCAACAGCTACTCCTACTGCCAAGCCCTCTGCAACACC
AACCACTACACCCACGCCCTCGCCGATAGGCTTGCCTACAGCCACTCCCA
CTGCCACGCCCACTGCAACACCGACAGATGTTCCAACAGGTGCATCCACA
GCCACTCCCACGGGCACATCAACTGCTTCGCCGACATCGTCACCCACCGC
CTTGCCTACTGCGATGCCTACCGCATTACCGACAAACACACCTACCGCCT
CGCCCACAGCCATTCCCACGGCCATACCCACCTCACCTCCCACTACCACA
CCGACACGCAATCCTACCAAGACTCCCACGGCTGTGCCTACTCCTTCTCC
TTCCGCTGTCCCTACCCTGGGGCCGAACGAGATAGTGACGCAGGGGTTCC
TCGATTCCCTGGTCGTCAGTCCTGGCGGTCCGCTCACCGTTTCTTCCGAT
TTCATATTTGTGGAACGCCCCGAATCCGATGTTTTTGTCTCGCTTACGAT
AGGACAGGAGGCAAGCGCCTCAGGATTTCGCAACAGGACTCAAAAGGCGA
TCGGTGCTCGAGAATTGACATTCAAACGATCTACACTGCGACCCAACACA
TGGAGGCCCAAGCCTCGCTACTCGATAGTAGGCAATGAAGTTGTCTGGCA
ACTTCCCTTTGATGGCTTTGTTCTCAAGAAGACGTATAAGATCAAGTGGA
AACTCCGTGTGGACCGGGGCGTTACCAGCGGCACCCAATTGCCTTTTATA
TTACGTGTCGGGTCAAACATGCAAGACTTGATGGTGACCGTGCTATAAAA
AGACTAGAAATCACAAGAAGCAAAATATCATTCTAAATAATATGTTCGTT
AGAAATTTAAAACGTCATGATTGAGAAAAGTGGGAAGCAAGTCGCCGAAG
AAACTGCTGGACAGATCCACGGCAGCCAGATCACCTGCACATGTTCAGAA
TGAGGCCGGACATGTTGGCTTATCTTCCGTTATATAAGGGGGGAAAGCAG
GAGATGGTACTGGGGAAGGGAAAGATATAGTACGGTTATTTGCAGCGTTC
AAGCAAGGAGGCCATCCAGTGAAGGTGCGTTAAAAAGTGTGAAATGGATA
CAGAGCTTGCACTATGCGTGTAGCTTTTATGTGTAAGTGAACGGGAAATA
CGAAAAATGTATGTCGAGGATCTTTCGAAAAGCATTGTAATTAATATCCT
GCGCTTTTGCGGTAAAAATTATTACGACCAAAACG
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protein sequence of rna8718

>rna8718-protein ID=rna8718-protein|Name=rna8718|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MHPAGSCRVAKLFQPSFRHLFAFCLYPSDERRHEQGSQPAHHPPYETLRR
QEHSDRCPSEDAAGIY
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mRNA from alignment at KK037249.1:651251..651880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8718 ID=rna8718|Name=rna8718|organism=Nannochloropsis gaditana|type=mRNA|length=630bp|location=Sequence derived from alignment at KK037249.1:651251..651880+ (Nannochloropsis gaditana)
ATGGTACAGGCGTTTCCAAAACTAAGAGTGGTTTGCTGCTGTCTGCGACG
CGCGTcagagacggaggagccCTCGGCCTTTCCTCACCTTACTTTTCCAG
CTTCATTTTTCAGTGTCAGCGTGAGCTTTCGTCTCCCGTGTCCTGAAAGT
CATTCAACACGCATACCGCTCGAGCAAGATGTCTTCTCAGCTTCCGCGCC
Cgacccctccacctccccctccttctggctccgccgcccctgcccctttc
aGCATCCAGCAGGCTCATGCCGTGTCGCAAAACTCTTCCAACCATCCTTC
CGAcacctcttcgccttctgccTCTATCCATCGGACGAACGGAGGCATGA
ACAAGGGTCCCAGGTAAGCGTGACGGAGGATTCGCGatggatggaaggaa
gaggcgtATTTCCCCAGACTTGAAGGCAAGCAGGCATACATACGACCATT
TCCCTCCAGGGCATCGCACAAATAACAATCGGCTCGCATACGCCTCGTTA
TCATCACCCACTCACCCTCTTCACCCACGTGACCCCCTTCCAGcccgccc
accaccctccctacGAAACCCTCCGGCGTCAAGAGCATTCTGACCGCTGC
CCAAGTGAAGATGCAGCAGGCATATACTGA
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Coding sequence (CDS) from alignment at KK037249.1:651251..651880+

>rna8718 ID=rna8718|Name=rna8718|organism=Nannochloropsis gaditana|type=CDS|length=603bp|location=Sequence derived from alignment at KK037249.1:651251..651880+ (Nannochloropsis gaditana)
ATGCATCCAGCAGGCTCATGCCGTGTCGCAAAACTCTTCCAACCATCCTT
CCGAcacctcttcgccttctgccTCTATCCATCGGACGAACGGAGGCATG
AACAAGGGTCCCAGcccgcccaccaccctccctacGAAACCCTCCGGCGT
CAAGAGCATTCTGACCGCTGCCCAAGTGAAGATGCAGCAGGCATATACTG
AATGCATCCAGCAGGCTCATGCCGTGTCGCAAAACTCTTCCAACCATCCT
TCCGAcacctcttcgccttctgccTCTATCCATCGGACGAACGGAGGCAT
GAACAAGGGTCCCAGcccgcccaccaccctccctacGAAACCCTCCGGCG
TCAAGAGCATTCTGACCGCTGCCCAAGTGAAGATGCAGCAGGCATATACT
GAATGCATCCAGCAGGCTCATGCCGTGTCGCAAAACTCTTCCAACCATCC
TTCCGAcacctcttcgccttctgccTCTATCCATCGGACGAACGGAGGCA
TGAACAAGGGTCCCAGcccgcccaccaccctccctacGAAACCCTCCGGC
GTCAAGAGCATTCTGACCGCTGCCCAAGTGAAGATGCAGCAGGCATATAC
TGA
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Synonyms
Publications