rna8714, rna8714 (mRNA) Nannochloropsis gaditana

Overview
Namerna8714
Unique Namerna8714
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length318
Alignment locationKK037249.1:644109..644675 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101706g1.9461.mrna
Orig protein idgnl|cribi|Naga_101706g1.9461
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:644109..644675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101706g1gene8445Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8714rna8714-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21988.1cds8685Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8714 ID=rna8714|Name=rna8714|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGCGAAGCCTTAAAGGAGGAAGAGGAAGCAGGGAGGGGGGCGAAATGTT
AAGGAATGGGAACGAGAGGAAATCGATCGCAAGCCGTTACATAAAGCCTC
TCTTTCGTCATCTTCAACGCGCACAACGGATGTCAAATCGGCTTAACAGG
AGTATGGGAAAGGAAGCAAATGTTCCTGATGGCAATACACGTGCGCACAA
CGAGGAAGTACATGTGAGGAGAGAGAGGGGGGGGGGAAGGAGGGAACTCC
GTCGTGTCATCACTCTGGGCTATACAGAGAGCAGCGCATCACTTCCAATC
CCTTCTTCTTCCACTTGA
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protein sequence of rna8714

>rna8714-protein ID=rna8714-protein|Name=rna8714|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MRTHFGGCRCPVTPTSAQRSTSKLIRSPPYHLVFSGEIDRRNATYLTVLE
VEIARAAAKYPCKFWQWCLSSLPAVVSSLQASSTWRGEQGKTNPTQTRVF
ARRTSTRRFSRTLWKLETFWVNNTRWRPIIKHSGCVVLPKTSKSGAVGRL
LAVKQA
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mRNA from alignment at KK037249.1:644109..644675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8714 ID=rna8714|Name=rna8714|organism=Nannochloropsis gaditana|type=mRNA|length=567bp|location=Sequence derived from alignment at KK037249.1:644109..644675- (Nannochloropsis gaditana)
ATGCGGACGCATTTTGGGGGATGTCGTTGTCCTGTAACACCCACCTCTGC
CCAACGTTCAACCTCAAAGCTGATTCGATCGCCCCCCTACCATCTTGTAT
TTTCCGGGGAAATCGACAGGCGCAACGCAACCTACCTGACTGTATTGGAG
GTTGAAATAGCACGTGCTGCCGCAAAGTACCCGTGTAAGTTTTGGCAGTG
GTGTTTATCAAGCCTGCCAGCGGTAGTTTCCTCTCTCCAAGCGAGCAGCA
CGTGGAGGGGAGAGCAGGGAAAAACTAACCCAACACAGACAAGGGTTTTT
GCACGGCGCACAAGGTTGCATAGCTTATCGCCACTCTAATCTGCACCGGG
GGAAGCACGCGGCGCTTTTGTGGGGTTACGCGTGCAGTTTGGTTTTTGCG
GACAGCTGGGGATGCCCCTGTGAGCTCGAACTCTGTGGAAGTTGGAGACA
TTTTGGGTGAATAACACGCGTTGGCGCCCCATCATAAAGCATTCGGGTTG
CGTGGTCCTTCCAAAGACATCCAAGTCGGGCGCCGTTGGACGTTTGCTGG
CAGTAAAACAGGCGTGA
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Coding sequence (CDS) from alignment at KK037249.1:644109..644675-

>rna8714 ID=rna8714|Name=rna8714|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at KK037249.1:644109..644675- (Nannochloropsis gaditana)
CTCGAACTCTGTGGAAGTTGGAGACATTTTGGGTGAATAACACGCGTTGG
CGCCCCATCATAAAGCATTCGGGTTGCGTGGTCCTTCCAAAGACATCCAA
GTCGGGCGCCGTTGGACGTTTGCTGGCAGTAAAACAGGCGTGACACGCGG
CGCTTTTATGCGGACGCATTTTGGGGGATGTCGTTGTCCTGTAACACCCA
CCTCTGCCCAACGTTCAACCTCAAAGCTGATTCGATCGCCCCCCTACCAT
CTTGTATTTTCCGGGGAAATCGACAGGCGCAACGCAACCTACCTGACTGT
ATTGGAGGTTGAAATAGCACGTGCTGCCGCAAAGTACCCGTGTAAGTTTT
GGCAGTGGTGTTTATCAAGCCTGCCAGCGGTAGTTTCCTCTCTCCAAGCG
AGCAGCACGTGGAGGGGAGAGCAGGGAAAAACTAACCCAACACAGACAAG
GGTTTTTGCACGGCGCACAAGCTCGAACTCTGTGGAAGTTGGAGACATTT
TGGGTGAATAACACGCGTTGGCGCCCCATCATAAAGCATTCGGGTTGCGT
GGTCCTTCCAAAGACATCCAAGTCGGGCGCCGTTGGACGTTTGCTGGCAG
TAAAACAGGCGTGACACGCGGCGCTTTTATGCGGACGCATTTTGGGGGAT
GTCGTTGTCCTGTAACACCCACCTCTGCCCAACGTTCAACCTCAAAGCTG
ATTCGATCGCCCCCCTACCATCTTGTATTTTCCGGGGAAATCGACAGGCG
CAACGCAACCTACCTGACTGTATTGGAGGTTGAAATAGCACGTGCTGCCG
CAAAGTACCCGTGTAAGTTTTGGCAGTGGTGTTTATCAAGCCTGCCAGCG
GTAGTTTCCTCTCTCCAAGCGAGCAGCACGTGGAGGGGAGAGCAGGGAAA
AACTAACCCAACACAGACAAGGGTTTTTGCACGGCGCACAAGCTCGAACT
CTGTGGAAGTTGGAGACATTTTGGGTGAATAACACGCGTTGGCGCCCCAT
CATAAAGCATTCGGGTTGCGTGGTCCTTCCAAAGACATCCAAGTCGGGCG
CCGTTGGACGTTTGCTGGCAGTAAAACAGGCGTGACACGCGGCGCTTTTA
TGCGGACGCATTTTGGGGGATGTCGTTGTCCTGTAACACCCACCTCTGCC
CAACGTTCAACCTCAAAGCTGATTCGATCGCCCCCCTACCATCTTGTATT
TTCCGGGGAAATCGACAGGCGCAACGCAACCTACCTGACTGTATTGGAGG
TTGAAATAGCACGTGCTGCCGCAAAGTACCCGTGTAAGTTTTGGCAGTGG
TGTTTATCAAGCCTGCCAGCGGTAGTTTCCTCTCTCCAAGCGAGCAGCAC
GTGGAGGGGAGAGCAGGGAAAAACTAACCCAACACAGACAAGGGTTTTTG
CACGGCGCACAAG
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Synonyms
Publications