rna8712, rna8712 (mRNA) Nannochloropsis gaditana

Overview
Namerna8712
Unique Namerna8712
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length642
Alignment locationKK037249.1:640752..641933 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100670g1.7113.mrna
Orig protein idgnl|cribi|Naga_100670g1.7113
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:640752..641933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100670g1gene8443Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8712rna8712-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21990.1cds8683Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8712 ID=rna8712|Name=rna8712|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
TTTTGGTATTTCAGATGATATTTGTCCCGCTTCCGCTTGTCATGCATGTC
TCGGAGACCGTTTCTCTTAAACTTGTGCATTTTTGTTTGCTAACCTCACG
AGTTATGTCTTGAATGGTCCGATCAGGTCGACATTGTTGACGAAAGCAAT
CAAGTATTGCGCCAAGAGCGTCGGGAAATCATGCGCAAAGAACGGCTGTT
GCACCGTTCTACTTATATTTTTGCGCGAAACAGCCAGGGAGAGTACTATG
TGCAGAAACGAACCATGCTCAAGGACTACTGTCCTGGGTACTACGAGGTG
GTGGCCGGTGGAGTGGTGGGGGCAGGCGAAACCTACGCCGAGAATGCCGA
TCGAGAGGCGGAGGAAGAGCTGGGCATTCCACCTTCTGCGGGAAAAAAGC
ATTTGTTCACTTTCTTGTACCAAGATGAGCGAATTCGTGTCTTTGGTGAC
GCCTGGGAAGTAGTGTGGGACGGAGCTTTGACATTGCAAAAGGAGGAAGT
CGAAAGCGTGCATCCCATGACGCTTGAGGAAGTTTTTATTCGGGTCGAGG
CTGGAGACAAGTTCACGCCCGATTCGCTGTATGCGACCCGGAAGTATCTT
GACTTTTTGCGCGAAAAGGGAGAAAAGTCAAACGGAAATTGA
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protein sequence of rna8712

>rna8712-protein ID=rna8712-protein|Name=rna8712|organism=Nannochloropsis gaditana|type=polypeptide|length=242bp
MDAESTKMGSSATSFSPSLPPSLSTSSLPEADGEIATEQNKTTDHAKLTF
QATVVPAKFATASTKTTETSAAGSSSPKKPSAAVNTTSSPPPSIGLPTSS
PYPSSAAVSPSCPRPTSSPARSSTSTAASPSLSPAHSGMVASPSPPSAVS
SSSPSSSPSSSSSLPDEKTLVRWCQRVVANDMGLKNESLLDDDFYFIGPF
DGPIGKTAFLEGRSLPPSLPPSLPPSLPPPPLRSSLLPTSPV
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mRNA from alignment at KK037249.1:640752..641933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8712 ID=rna8712|Name=rna8712|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp|location=Sequence derived from alignment at KK037249.1:640752..641933+ (Nannochloropsis gaditana)
ATGGACGCTGAATCCACCAAGATGGGGTCGTCCGCCacgtctttttctcc
ctccctccctccttccctttccacctcctcgctgccgGAGGCAGACGGCG
AGATAGCGACGGAACAAAATAAAACCACGGACCATGCCAAACTCACTTTT
CAGGCGACGGTCGTGCCCGCAAAATTCGCCACAGCCAGCACAAAGACCAC
CGAAACGTCAGCGGCGGGTTCTTCTAGGTGTGTATTTGTTCATATGTACA
AGTGCCCGCAAgtgaggaaaagcaggaggtAGATTGATCTCCTCTTTCCA
actccccttcgccttttgacttcctgctctcctcctacGCACAGCCCCAA
GAAaccctccgccgccgtcaacaccaccagcagccctcctccttccattg
gtcttcctacttcctccccctaccCCTCGTCTGCTGCCGTttcgccctcc
tgccctcgccctACCTCGTCACCTGCCCgttcttccacctccactgccgc
atcgccttccctctctcccgcccacTCCGGCATGGtagcctctccttccc
ctccctccgctgtttcctcctcctctccctcctcctccccctcctcctcc
tcctccctccccgacgagAAGACTCTTGTCCGTTGGTGTCAAAGGGTGGT
GGCAAACGACATGGGGTTGAAAAATGAAAGCCTCCTGGACGATGACTTCT
ACTTCATCGGGCCCTTCGACGGGTGCGAGacttgctgccctccctccttc
cctccctcctttccactctttctccctcccgccccccctccctccctccc
ttctttcagttctctcttcctctcctttcaccTCTATTTTATAGCCTGCG
CCGCATGAATTCGAAATGTGGGCAGCATGAATTTTGAATCTTACGCTGAA
AACCAGttctttgtctccttcccttcctccttcccttcctccctccctcc
ctccctccctccctctttccctccctccctccagtcccATCGGGAAGACT
GCCTTTCTGGAAGGTTCCAGAAGTTTTGACCTTCGGGGTGCCTTCCCCGA
TTTCGATTTTCGGGCCCACAGCTTCCGCGTGGACAAggtcggtccctccc
tccttccctccctccctccctccctccctccctccctcccccccccctcc
gctcctccctccttcctacgtCCCCCGTCTAG
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Coding sequence (CDS) from alignment at KK037249.1:640752..641933+

>rna8712 ID=rna8712|Name=rna8712|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at KK037249.1:640752..641933+ (Nannochloropsis gaditana)
ATGGACGCTGAATCCACCAAGATGGGGTCGTCCGCCacgtctttttctcc
ctccctccctccttccctttccacctcctcgctgccgGAGGCAGACGGCG
AGATAGCGACGGAACAAAATAAAACCACGGACCATGCCAAACTCACTTTT
CAGGCGACGGTCGTGCCCGCAAAATTCGCCACAGCCAGCACAAAGACCAC
CGAAACGTCAGCGGCGGGTTCTTCTAGCCCCAAGAAaccctccgccgccg
tcaacaccaccagcagccctcctccttccattggtcttcctacttcctcc
ccctaccCCTCGTCTGCTGCCGTttcgccctcctgccctcgccctACCTC
GTCACCTGCCCgttcttccacctccactgccgcatcgccttccctctctc
ccgcccacTCCGGCATGGtagcctctccttcccctccctccgctgtttcc
tcctcctctccctcctcctccccctcctcctcctcctccctccccgacga
gAAGACTCTTGTCCGTTGGTGTCAAAGGGTGGTGGCAAACGACATGGGGT
TGAAAAATGAAAGCCTCCTGGACGATGACTTCTACTTCATCGGGCCCTTC
GACGGtcccATCGGGAAGACTGCCTTTCTGGAAGgtcggtccctccctcc
ttccctccctccctccctccctccctccctccctcccccccccctccgct
cctccctccttcctacgtCCCCCGTCTAGATGGACGCTGAATCCACCAAG
ATGGGGTCGTCCGCCacgtctttttctccctccctccctccttccctttc
cacctcctcgctgccgGAGGCAGACGGCGAGATAGCGACGGAACAAAATA
AAACCACGGACCATGCCAAACTCACTTTTCAGGCGACGGTCGTGCCCGCA
AAATTCGCCACAGCCAGCACAAAGACCACCGAAACGTCAGCGGCGGGTTC
TTCTAGCCCCAAGAAaccctccgccgccgtcaacaccaccagcagccctc
ctccttccattggtcttcctacttcctccccctaccCCTCGTCTGCTGCC
GTttcgccctcctgccctcgccctACCTCGTCACCTGCCCgttcttccac
ctccactgccgcatcgccttccctctctcccgcccacTCCGGCATGGtag
cctctccttcccctccctccgctgtttcctcctcctctccctcctcctcc
ccctcctcctcctcctccctccccgacgagAAGACTCTTGTCCGTTGGTG
TCAAAGGGTGGTGGCAAACGACATGGGGTTGAAAAATGAAAGCCTCCTGG
ACGATGACTTCTACTTCATCGGGCCCTTCGACGGtcccATCGGGAAGACT
GCCTTTCTGGAAGgtcggtccctccctccttccctccctccctccctccc
tccctccctccctcccccccccctccgctcctccctccttcctacgtCCC
CCGTCTAGATGGACGCTGAATCCACCAAGATGGGGTCGTCCGCCacgtct
ttttctccctccctccctccttccctttccacctcctcgctgccgGAGGC
AGACGGCGAGATAGCGACGGAACAAAATAAAACCACGGACCATGCCAAAC
TCACTTTTCAGGCGACGGTCGTGCCCGCAAAATTCGCCACAGCCAGCACA
AAGACCACCGAAACGTCAGCGGCGGGTTCTTCTAGCCCCAAGAAaccctc
cgccgccgtcaacaccaccagcagccctcctccttccattggtcttccta
cttcctccccctaccCCTCGTCTGCTGCCGTttcgccctcctgccctcgc
cctACCTCGTCACCTGCCCgttcttccacctccactgccgcatcgccttc
cctctctcccgcccacTCCGGCATGGtagcctctccttcccctccctccg
ctgtttcctcctcctctccctcctcctccccctcctcctcctcctccctc
cccgacgagAAGACTCTTGTCCGTTGGTGTCAAAGGGTGGTGGCAAACGA
CATGGGGTTGAAAAATGAAAGCCTCCTGGACGATGACTTCTACTTCATCG
GGCCCTTCGACGGtcccATCGGGAAGACTGCCTTTCTGGAAGgtcggtcc
ctccctccttccctccctccctccctccctccctccctccctcccccccc
cctccgctcctccctccttcctacgtCCCCCGTCTAGATGGACGCTGAAT
CCACCAAGATGGGGTCGTCCGCCacgtctttttctccctccctccctcct
tccctttccacctcctcgctgccgGAGGCAGACGGCGAGATAGCGACGGA
ACAAAATAAAACCACGGACCATGCCAAACTCACTTTTCAGGCGACGGTCG
TGCCCGCAAAATTCGCCACAGCCAGCACAAAGACCACCGAAACGTCAGCG
GCGGGTTCTTCTAGCCCCAAGAAaccctccgccgccgtcaacaccaccag
cagccctcctccttccattggtcttcctacttcctccccctaccCCTCGT
CTGCTGCCGTttcgccctcctgccctcgccctACCTCGTCACCTGCCCgt
tcttccacctccactgccgcatcgccttccctctctcccgcccacTCCGG
CATGGtagcctctccttcccctccctccgctgtttcctcctcctctccct
cctcctccccctcctcctcctcctccctccccgacgagAAGACTCTTGTC
CGTTGGTGTCAAAGGGTGGTGGCAAACGACATGGGGTTGAAAAATGAAAG
CCTCCTGGACGATGACTTCTACTTCATCGGGCCCTTCGACGGtcccATCG
GGAAGACTGCCTTTCTGGAAGgtcggtccctccctccttccctccctccc
tccctccctccctccctccctcccccccccctccgctcctccctccttcc
tacgtCCCCCGTCTAG
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Synonyms
Publications