rna8711, rna8711 (mRNA) Nannochloropsis gaditana

Overview
Namerna8711
Unique Namerna8711
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1354
Alignment locationKK037249.1:638445..639831 -

Link to JBrowse

Properties
Property NameValue
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100670g2.7117.mrna
Orig protein idgnl|cribi|Naga_100670g2.7117
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:638445..639831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100670g2gene8442Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8711rna8711-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21994.1cds8682Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8711 ID=rna8711|Name=rna8711|organism=Nannochloropsis gaditana|type=mRNA|length=1354bp
GGGAGAAAAAGACGTGGCGGACGACCCCATCTTGGTGGATTCAGCGTCCA
TATCCATGAGGAATGCGTAGCCACTTTGTTGATAGAACTGATGATGTGAC
CCGAAAAAGGAATGGGAGGAAAAGAAGGAAAACCATGGAGAATGGTTTCG
ACGTGGTCAACGTCATGGAAGGCATCAGTCGTGTCCCATTCAGTGTCAAT
TAAAAAAAAAGCCAGATGGCCTCGCACCTTGCATCAAGGTACTCAAATTG
TTAAGTTGTACCAATCTTGACTTTATACCAGCGGAAATGGTTTGATTGAC
TGGCTACGCCGTAAAAATAAATGGCGTCGGAAGGAGAAGGAGGAGAGATT
GGGAACCGGGAGGGACAAGAGGAAAGGGTTAAAATACCCTTCCAAAAAAA
AGAAACGAGGCGCCACATTGTTGATATCCAGGTGACATATACCTGGTGAG
GATTATATTTTAAAAAGATATTGTGTCTCATAGATCGCATCCGCGTACTG
AATTGCTGTGTCAGAAATGTAAGTTTTTCGTTCATCTCAAGTAGATAAAG
CGGACCTACTTCAAAGATAACAATTTCGTCCACGACTGTCTTTTCAGGAC
AATCAATAGGGGCGCAAGGTCTCAACAAATGAATCCACTGTATGTTTACG
CTCAGTTTTGCGTAGTGCGCACCCAGTTGGGTGTTTGATGTACAAAATGG
AATGGTTAACCGTGTCGTCGCACCGCCTCAGTCTCGCACAGGCGTCGCCG
ACCAAATTTTCCCACAATAAAATCCTCGTGCACATCGCGGCAAATCTCGA
GCACTGTCAACAACATGTCTCTCTCCGCGGACGAAATTGTCGACATTGTT
GACGAAAGCAATCAAGTATTGCGCCAAGAGCGTCGGGAAATCATGCGCAA
AGAACGGCTGTTGCACCGTTCTACTTATATTTTTGCGCGAAACAGCCAGG
GAGAGTACTATGTGCAGAAACGAACCATGCTCAAGGACTACTGTCCTGGG
TACTACGAGGTGGTGGCCGGTGGAGTGGTGGGGGCAGGCGAAACCTACGC
CGAGAATGCCGATCGAGAGGCGGAGGAAGAGCTGGGCATTCCACCTTCTG
CGGGAAAAAAGCATTTGTTCACTTTCTTGTACCAAGATGAGCGAATTCGT
GTCTTTGGTGACGCCTGGGAAGTAGTGTGGGACGGAGCTTTGACATTGCA
AAAGGAGGAAGTCGAAAGCGTGCATCCCATGACGCTTGAGGAAGTTTTTA
TTCGGGTCGAGGCTGGAGACAAGTTCACGCCCGATTCGCTGTATGCGACC
CGGAAGTATCTTGACTTTTTGCGCGAAAAGGGAGAAAAGTCAAACGGAAA
TTGA
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protein sequence of rna8711

>rna8711-protein ID=rna8711-protein|Name=rna8711|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MRKERLLHRSTYIFARNSQGEYYVQKRTMLKDYCPGYYEVVAGGVVGAGE
TYAENADREAEEELGIPPSAGKKHLFTFLYQDERIRVFGDAWEVVWDGAL
TLQKEEVESVHPMTLEEVFIRVEAGDKFTPDSLYATRKYLDFLREKGEKS
NGN
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mRNA from alignment at KK037249.1:638445..639831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8711 ID=rna8711|Name=rna8711|organism=Nannochloropsis gaditana|type=mRNA|length=1387bp|location=Sequence derived from alignment at KK037249.1:638445..639831- (Nannochloropsis gaditana)
TTTTGGTATTTCAGATGATATTTGTCCCGCTTCCGCTTGTCATGCATGTC
TCGGAGACCGTTTCTCTTAAACTTGTGCATTTTTGTTTGCTAACCTCACG
AGTTATGTCTTGAATGGTCCGATCAGGTCGACATTGTTGACGAAAGCAAT
CAAGTATTGCGCCAAGAGCGTCGGGAAATCATGGTACGTCGTCGAGGCCG
GAATAATTTTTTGTGCACTGCCAACGCCGACAATCATCGATCTTAGTCAT
GGGTGTGCCACGTCGCCGCTCCCTTGGGCCCATGACACCTCAGACACCTG
TACCATGCTTTGCTTCCATCTTTTCCCTCATCTTCGTGCCTGCCAATCTT
TCCTTTCATCTCCACAGCGCAAAGAACGGCTGTTGCACCGTTCTACTTAT
ATTTTTGCGCGAAACAGCCAGGGAGAGTACTATGTGCAGAAACGAACCAT
GCTCAAGGACTACTGTCCTGGGTACTACGAGGTGGTGGCCGGTGGAGTGG
TGGGGGTAAGGCAGGAGGGAGGGAGGGAGAGGGGTGGAGGGGCGGACCAA
GGGAGGGCAGGTGGCGGGGACGGTTCAGGAAGCAGGAGAAGGCAAAAGCA
AAACGTTCAGGAAGCAGGAGAAGGCAAAAGCAAATCATGATGCGGGGGAC
AGGTGTCATCTTACGCAACGACCAAGGGCGGCCACATCAACTCTCTCCTC
TCACCCCTGTCCTTCCTTTCCTCTTTTCCCCGTCCCCGCTCCCTCCTCCT
CCCCCTTCTCCTCCTCCCGTACGCAGGCAGGCGAAACCTACGCCGAGAAT
GCCGATCGAGAGGCGGAGGAAGAGCTGGGCATTCCACCTTCTGCGGGAAA
AAAGCATTTGTTCACTTTCTTGTACCAAGATGAGCGAATTCGTGTCTTTG
GTGACGCCTGGGAAGTAGTGTGGGACGGAGCTTTGACATTGCAAAAGGTA
AGGAGAGAGGGCGGAGGGTACCCACGGGGAGGGGGAATCGGGGCAAGGAC
GTCGACCAACGTCCCACAGGTTCCGAGCTTCGCATTCAGGTGAATTTTGT
CCTCGTTCCTGCCTTGATTATGCTCGTCTCCTTTCTTTATTGGCCCTTTA
ACCCCCAGGAGGAAGTCGAAAGCGTGCATCCCATGACGCTTGAGGAAGTT
TTTATTCGGGTCGAGGTATGGCCTACCCTGTCTCTTGACCAAATTTTCCC
ATCTTTTTGCATTCTTGTTCGTCCTTCCTGCCGTTTCCATCGATTTTCCA
GATTCTTTTCTCACCTCTCTGCCCATTGTCCGCTTCTGGAATAGGCTGGA
GACAAGTTCACGCCCGATTCGCTGTATGCGACCCGGAAGTATCTTGACTT
TTTGCGCGAAAAGGGAGAAAAGTCAAACGGAAATTGA
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Coding sequence (CDS) from alignment at KK037249.1:638445..639831-

>rna8711 ID=rna8711|Name=rna8711|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at KK037249.1:638445..639831- (Nannochloropsis gaditana)
GCTGGAGACAAGTTCACGCCCGATTCGCTGTATGCGACCCGGAAGTATCT
TGACTTTTTGCGCGAAAAGGGAGAAAAGTCAAACGGAAATTGAGAGGAAG
TCGAAAGCGTGCATCCCATGACGCTTGAGGAAGTTTTTATTCGGGTCGAG
GCAGGCGAAACCTACGCCGAGAATGCCGATCGAGAGGCGGAGGAAGAGCT
GGGCATTCCACCTTCTGCGGGAAAAAAGCATTTGTTCACTTTCTTGTACC
AAGATGAGCGAATTCGTGTCTTTGGTGACGCCTGGGAAGTAGTGTGGGAC
GGAGCTTTGACATTGCAAAAGCGCAAAGAACGGCTGTTGCACCGTTCTAC
TTATATTTTTGCGCGAAACAGCCAGGGAGAGTACTATGTGCAGAAACGAA
CCATGCTCAAGGACTACTGTCCTGGGTACTACGAGGTGGTGGCCGGTGGA
GTGGTGGGGATGGCTGGAGACAAGTTCACGCCCGATTCGCTGTATGCGAC
CCGGAAGTATCTTGACTTTTTGCGCGAAAAGGGAGAAAAGTCAAACGGAA
ATTGAGAGGAAGTCGAAAGCGTGCATCCCATGACGCTTGAGGAAGTTTTT
ATTCGGGTCGAGGCAGGCGAAACCTACGCCGAGAATGCCGATCGAGAGGC
GGAGGAAGAGCTGGGCATTCCACCTTCTGCGGGAAAAAAGCATTTGTTCA
CTTTCTTGTACCAAGATGAGCGAATTCGTGTCTTTGGTGACGCCTGGGAA
GTAGTGTGGGACGGAGCTTTGACATTGCAAAAGCGCAAAGAACGGCTGTT
GCACCGTTCTACTTATATTTTTGCGCGAAACAGCCAGGGAGAGTACTATG
TGCAGAAACGAACCATGCTCAAGGACTACTGTCCTGGGTACTACGAGGTG
GTGGCCGGTGGAGTGGTGGGGATGGCTGGAGACAAGTTCACGCCCGATTC
GCTGTATGCGACCCGGAAGTATCTTGACTTTTTGCGCGAAAAGGGAGAAA
AGTCAAACGGAAATTGAGAGGAAGTCGAAAGCGTGCATCCCATGACGCTT
GAGGAAGTTTTTATTCGGGTCGAGGCAGGCGAAACCTACGCCGAGAATGC
CGATCGAGAGGCGGAGGAAGAGCTGGGCATTCCACCTTCTGCGGGAAAAA
AGCATTTGTTCACTTTCTTGTACCAAGATGAGCGAATTCGTGTCTTTGGT
GACGCCTGGGAAGTAGTGTGGGACGGAGCTTTGACATTGCAAAAGCGCAA
AGAACGGCTGTTGCACCGTTCTACTTATATTTTTGCGCGAAACAGCCAGG
GAGAGTACTATGTGCAGAAACGAACCATGCTCAAGGACTACTGTCCTGGG
TACTACGAGGTGGTGGCCGGTGGAGTGGTGGGGATGGCTGGAGACAAGTT
CACGCCCGATTCGCTGTATGCGACCCGGAAGTATCTTGACTTTTTGCGCG
AAAAGGGAGAAAAGTCAAACGGAAATTGAGAGGAAGTCGAAAGCGTGCAT
CCCATGACGCTTGAGGAAGTTTTTATTCGGGTCGAGGCAGGCGAAACCTA
CGCCGAGAATGCCGATCGAGAGGCGGAGGAAGAGCTGGGCATTCCACCTT
CTGCGGGAAAAAAGCATTTGTTCACTTTCTTGTACCAAGATGAGCGAATT
CGTGTCTTTGGTGACGCCTGGGAAGTAGTGTGGGACGGAGCTTTGACATT
GCAAAAGCGCAAAGAACGGCTGTTGCACCGTTCTACTTATATTTTTGCGC
GAAACAGCCAGGGAGAGTACTATGTGCAGAAACGAACCATGCTCAAGGAC
TACTGTCCTGGGTACTACGAGGTGGTGGCCGGTGGAGTGGTGGGGATGGC
TGGAGACAAGTTCACGCCCGATTCGCTGTATGCGACCCGGAAGTATCTTG
ACTTTTTGCGCGAAAAGGGAGAAAAGTCAAACGGAAATTGAGAGGAAGTC
GAAAGCGTGCATCCCATGACGCTTGAGGAAGTTTTTATTCGGGTCGAGGC
AGGCGAAACCTACGCCGAGAATGCCGATCGAGAGGCGGAGGAAGAGCTGG
GCATTCCACCTTCTGCGGGAAAAAAGCATTTGTTCACTTTCTTGTACCAA
GATGAGCGAATTCGTGTCTTTGGTGACGCCTGGGAAGTAGTGTGGGACGG
AGCTTTGACATTGCAAAAGCGCAAAGAACGGCTGTTGCACCGTTCTACTT
ATATTTTTGCGCGAAACAGCCAGGGAGAGTACTATGTGCAGAAACGAACC
ATGCTCAAGGACTACTGTCCTGGGTACTACGAGGTGGTGGCCGGTGGAGT
GGTGGGGATG
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Synonyms
Publications