rna8706, rna8706 (mRNA) Nannochloropsis gaditana

Overview
Namerna8706
Unique Namerna8706
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length464
Alignment locationKK037249.1:632612..633833 -

Link to JBrowse

Properties
Property NameValue
ProductCS-like domain protein
Orig transcript idgnl|cribi|Naga_101701g1.9415.mrna
Orig protein idgnl|cribi|Naga_101701g1.9415
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:632612..633833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101701g1gene8439Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21996.1cds8677Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8706rna8706-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8706 ID=rna8706|Name=rna8706|organism=Nannochloropsis gaditana|type=mRNA|length=464bp
GACATGAACTATGCATTTAAGATCTTTCTCATCTCCGGGCTCGTGGCTTG
GCACGTGCGTCGAAAAACGCGGCGTGAGGGCAAGACAACCTTTATAATAT
GAATCTACAAATGATATTTATTTATCCAATATCTGCCCCATCACCAACGA
CACCCCATCCTCACAGCTTCATGACCACATACACCGCGTCCTTCGCCGCC
GATGCCGCGACCCCAAGCGTGCACGTGGTCCCGCACGCCAACGTCCCCGA
CGGGGTGGATGCTCTGTGGTTGGTGGGCTTTGCTTTGCTTTCGGCCTTGA
CCACGGAAGGTATTATAGATATGTACACATATACGAGGAGGTTATCATTA
TCTGGGAGCATGGCTTTGAGGAAGCGTTGGGTAGATTGACGTGAATATTC
TCCAGCACTTCGGGTGTCAGGAGCCTGTCTCAACCCCAACATCGCTTCTC
GCTTCCCTCCCTCC
back to top

protein sequence of rna8706

>rna8706-protein ID=rna8706-protein|Name=rna8706|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIP
SRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPC
TRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWE
MVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIA
GRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKR
EG
back to top

mRNA from alignment at KK037249.1:632612..633833-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8706 ID=rna8706|Name=rna8706|organism=Nannochloropsis gaditana|type=mRNA|length=1222bp|location=Sequence derived from alignment at KK037249.1:632612..633833- (Nannochloropsis gaditana)
GGCGCACCATGCACAATTAAAAAAGTAGGGTTACACGTACAAGACAATGT
CAAGGCACGTCTTCCAAGCCACACATGCGTTATTCCCACGCGTGCCATTC
TAGGGCCTCCCTCATCTCACGGAAGCACCAGGGTCGTGGCGTAAGGTTTT
GTAAGTCCGCGTCCATATACCTGTAACCTCCTCCCCCTCCCCTTCCAGCC
TCCCTGCCCTTTGAACGCGATGCACGCACAAAAGCAGAAAATGTCTCACA
AATTGTACCACGAGGTGTTAATTTCGATGCGTCAACCCACTAAGCCCTCC
AGCTGCCCACCAAATTCTTTGACATTATCTACTTGTTCCTTCTTTCCCTT
CCCTCCCCGTAATCCGAAGGATCGAGAAATGAGATCTCGCCCCATCGATT
ATAGCAAATGGGACCATCTTGATACCTCCGACGACGAAGACGAGGAAGAA
AAACGAGGGCCACCGCGCGTCACGCACTTCAATGAGCCCATGTCGGTCAC
TGTGGGCGGACATGACCATCTAATCCCCTCCAGGTCGCCGGCGCCTTCCC
CCTCCTCCACCACACCACATCCTGCCAGCCGTATCGAAGACATTAGCGAA
AACGGACAATCCTTCCCAACTTTTACCTGGCGGCAAGACAGAGGGGAAGC
AATCATGCACATCTGGGCCCCGCCCTGCACACGCGCCAAGGACGTGCAGG
TCACGTACACCCGGGACACCAATCATTTGTCGGTGCGCATCACCACCCCG
ACGGCGGTGCCTGTGCTTGTAGAAGGCCCATTGGCCAACCCCATCCAACT
GGAGGAAGGGGAGGAAGTGGAGTGGGAAATGGTGGGGGAGGGAGGGCGGG
AAGGAGGGCGGGGGGGAGGAAGGGCAGTGCGGGTAAGCCTGATTAAATCT
ACGCCGAGACCTGATATGGTGCATTGGTGGTCACGAGTATTTGTGGGAGA
CGATGAGATCGACACGAGTCGAATCGCTGGGCGCAAGATGAATTTTCAGG
GGGCGTGGGAGGAGGCCCAACGGCGGTTTCGGGAGGACGTGGCACGTCGG
AACGCGCAGGGGCCGGTGGAGGTCGAGGTCGAGGGCGAGGTCGAGGGCGA
GGGCGAGGGCGGGGGGAAGTTGAAGAGAGAGGGATGAAAATCTGGAGCGT
GATGAACGATGGAACACATTTAAAAAGATGTCGCAAGCGAAAGCGAAACA
AAAACTTTTTCCTCCCCCGGAC
back to top

Coding sequence (CDS) from alignment at KK037249.1:632612..633833-

>rna8706 ID=rna8706|Name=rna8706|organism=Nannochloropsis gaditana|type=CDS|length=759bp|location=Sequence derived from alignment at KK037249.1:632612..633833- (Nannochloropsis gaditana)
ATGAGATCTCGCCCCATCGATTATAGCAAATGGGACCATCTTGATACCTC
CGACGACGAAGACGAGGAAGAAAAACGAGGGCCACCGCGCGTCACGCACT
TCAATGAGCCCATGTCGGTCACTGTGGGCGGACATGACCATCTAATCCCC
TCCAGGTCGCCGGCGCCTTCCCCCTCCTCCACCACACCACATCCTGCCAG
CCGTATCGAAGACATTAGCGAAAACGGACAATCCTTCCCAACTTTTACCT
GGCGGCAAGACAGAGGGGAAGCAATCATGCACATCTGGGCCCCGCCCTGC
ACACGCGCCAAGGACGTGCAGGTCACGTACACCCGGGACACCAATCATTT
GTCGGTGCGCATCACCACCCCGACGGCGGTGCCTGTGCTTGTAGAAGGCC
CATTGGCCAACCCCATCCAACTGGAGGAAGGGGAGGAAGTGGAGTGGGAA
ATGGTGGGGGAGGGAGGGCGGGAAGGAGGGCGGGGGGGAGGAAGGGCAGT
GCGGGTAAGCCTGATTAAATCTACGCCGAGACCTGATATGGTGCATTGGT
GGTCACGAGTATTTGTGGGAGACGATGAGATCGACACGAGTCGAATCGCT
GGGCGCAAGATGAATTTTCAGGGGGCGTGGGAGGAGGCCCAACGGCGGTT
TCGGGAGGACGTGGCACGTCGGAACGCGCAGGGGCCGGTGGAGGTCGAGG
TCGAGGGCGAGGTCGAGGGCGAGGGCGAGGGCGGGGGGAAGTTGAAGAGA
GAGGGATGA
back to top
Synonyms
Publications