EWM21996.1, cds8677 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|585102387|gb|EWM21996.1| (CS-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 509.605 bits (1311), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query: 1 MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG 252
MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG
Sbjct: 1 MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG 252
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|873222309|emb|CEM31509.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 90.1225 bits (222), Expect = 9.743e-18 Identity = 82/294 (27.89%), Postives = 127/294 (43.20%), Query Frame = 0
Query: 3 SRPIDYSKWDHLDTSDDEDEEEK-RGPPRVTHFNEPMSVTVGG---HDHLIPSRS-------------------------------PAPSPSSTTPHPASRI-------EDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMV--------------GEGGREGG--RGGGRAVRVSLIKSTPRPDM--VHWWSRVFVGDDEIDTSRIAGRKM--NFQGAWEEAQRRFREDVARRNAQGPVEVEV 234
++PIDYSKWDH+D SDD+++E+ R P VT F+ P VT GG + LI + PA P P D++ NG + + W Q R + + PP T A+DV++ D HL+V T +V+G L + ++ +E + WE++ G R R V+++L KS ++ WWS +F GD +IDT+ I RK+ + Q WEEA FR+ + + A+G + + V
Sbjct: 2 AKPIDYSKWDHIDVSDDDEQEKSSRRQPTVTRFDAPQKVTFGGGRKDEALIQPPASAAAAAPAPPRIEEIEDLDQGDDDDDGGDEWPANEPMDIDTRPPIVCGTRRPGPADLTRNGGATDRYYWSQSRYGLTVSVMVPPDTGARDVRINL--DEQHLTVTCKGQT----VVDGALEHRVKTDE-DSWTWEVIDFDDTQVTTTTTTNGSAAASSAPPRPSRRLVQLTLQKSERAAELGFFVWWSCIFQGDPKIDTASIEDRKIDPDTQKRWEEAHSMFRQQLREKKAKGLLPMSV 288
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|1206245861|ref|XP_021338807.1| (conserved Plasmodium protein, unknown function [Babesia microti strain RI] >gi|1139688991|emb|SJK86678.1| conserved Plasmodium protein, unknown function [Babesia microti strain RI]) HSP 1 Score: 74.7146 bits (182), Expect = 1.953e-12 Identity = 66/233 (28.33%), Postives = 98/233 (42.06%), Query Frame = 0
Query: 5 PIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTV--GGHDHLIPSR-SPAPSPSSTTPHPASR-IEDISENGQSFP-TFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVR------VSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRK---MNFQGAWEEAQRRFREDVAR 223
PIDYSKWD L + +DE ++ P VT F++P +VT+ D+L + S S T P R +E+ NG + W Q R I PP T+ K++ V T + S+ IT + V+++ + E + WE++ + ++L K + WW F GD +D RK +F WEEA R FRE VA
Sbjct: 2 PIDYSKWDALLVTSSDDEPDR---PIVTKFDKPKTVTIPYCSSDNLAQNNTSNVSSDKVPTREPQRRKLENYCINGGIVDNCYAWGQSRFNVWAIISLPPDTKGKNLNVVLTNE----SLTITDVSLPVVIIDKTFPFTVN-SEYDYYNWEILPHCNFVNDDPFNKLFHKRVIFEITLTKLEKFEAICSWWPCFFQGDPSVDVESFKDRKGDNKSFMKNWEEANRMFREKVAN 226
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|551672756|ref|XP_005839134.1| (hypothetical protein GUITHDRAFT_102055 [Guillardia theta CCMP2712] >gi|428183296|gb|EKX52154.1| hypothetical protein GUITHDRAFT_102055 [Guillardia theta CCMP2712]) HSP 1 Score: 74.7146 bits (182), Expect = 3.392e-12 Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 0
Query: 44 GHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTP----------RPDMVHWWSRVFVGDDEIDTSRIAGRKM----NFQGAWEEAQRRFREDV 221
G + L RS S +S AS + +S NG + + W QDR E +++ + P TRAKD+ V T + + L+ V+++ L+ P+ E + ++WE+ + G R +R+SL K+ P ++ WW VFVGD EID + I RK Q W+EA +F+ V
Sbjct: 86 GKEPLTEQRSSGTS-ASREEEIASSLARMSRNGGTCDQYIWSQDRHEVVINFFLPAGTRAKDMSVRLTSEKHLLA-----KNQEVVIIDRDLSYPVVNNE-DSLDWEL------KDFHDGRRLLRISLRKTLPGMTSLPALPVEESVILWWKCVFVGDAEIDVASIPDRKKKNLSTNQSVWKEAHEKFQHIV 264
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|1098425209|gb|OII73345.1| (nuclear move domain-containing protein [Cryptosporidium ubiquitum]) HSP 1 Score: 67.3958 bits (163), Expect = 9.175e-10 Identity = 61/242 (25.21%), Postives = 96/242 (39.67%), Query Frame = 0
Query: 6 IDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGH-----DHLIPSRSPAPSPSSTTPHPASRIEDISENGQSF-------PTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEW---EMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIA--------GRKMNFQGAWEEAQRRFREDVARR 224
IDYSKWD ++ S DE+ + VT F+ P S+T+GG D L+ S T SR + IS + F + W Q + + P T+ KD++V T D ++T ++ ++ ++ + W E+ G + R R + + L K + WW ++F G E D S+ + R F AWEEA FR + R
Sbjct: 4 IDYSKWDKIEISSDEESGKLGSKCNVTRFDSPQSITIGGQRESKEDSLVSSNILVDDL-KTKSVLVSREKVISLDDYVFGGKSACGKDYYWTQTENGLTIILEIDPGTQNKDLKVNVTED------KVTVTHGSETILFEEFEYGVK-DDDNTIFWSVKEVESLNGAQNKR--SRMLVLELEKKELDTSIRLWWKKIFKGGIEADISKFSRFSSPKSEERNRKFLEAWEEAHNEFRNKIKNR 235
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|255083416|ref|XP_002504694.1| (predicted protein [Micromonas commoda] >gi|226519962|gb|ACO65952.1| predicted protein [Micromonas commoda]) HSP 1 Score: 62.003 bits (149), Expect = 1.485e-7 Identity = 54/180 (30.00%), Postives = 76/180 (42.22%), Query Frame = 0
Query: 82 FTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGG---REGGR-----------GGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRK----MNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGE 243
+ W Q+ E ++ + PP T+AKDV V T D + + + LV+ +A+ I E ++ E E +G R G GG R VRV+ K M HWW R EIDT+ + RK Q WEEA F+E V R P+ + G E G+
Sbjct: 208 YMWSQEHDECVLSVVVPPGTKAKDVVVECTEDRVKVVLANHALQSATTLVDDDIAHRIDPEPRDDEELERSVDGFDVPRVYGEWEVCDWEPQSLGGRRVVRVTFRKKGLGA-MTHWWRRALRSGKEIDTAALKCRKEGKAAESQKIWEEATAAFKESVKNRK---PIPIPYTGPSEDSGD 383 The following BLAST results are available for this feature:
BLAST of EWM21996.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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