EWM21996.1, cds8677 (CDS) Nannochloropsis gaditana

Overview
NameEWM21996.1
Unique Namecds8677
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:632697..633455 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21996.1
ProductCS-like domain protein
Orig transcript idgnl|cribi|Naga_101701g1.9415.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:632697..633455 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|585102387|gb|EWM21996.1| (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 509.605 bits (1311), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG 252
            MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG
Sbjct:    1 MRSRPIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGEGGGKLKREG 252          
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|873222309|emb|CEM31509.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 90.1225 bits (222), Expect = 9.743e-18
Identity = 82/294 (27.89%), Postives = 127/294 (43.20%), Query Frame = 0
Query:    3 SRPIDYSKWDHLDTSDDEDEEEK-RGPPRVTHFNEPMSVTVGG---HDHLIPSRS-------------------------------PAPSPSSTTPHPASRI-------EDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMV--------------GEGGREGG--RGGGRAVRVSLIKSTPRPDM--VHWWSRVFVGDDEIDTSRIAGRKM--NFQGAWEEAQRRFREDVARRNAQGPVEVEV 234
            ++PIDYSKWDH+D SDD+++E+  R  P VT F+ P  VT GG    + LI   +                               PA  P      P            D++ NG +   + W Q R    + +  PP T A+DV++    D  HL+V     T    +V+G L + ++ +E +   WE++              G         R   R V+++L KS    ++    WWS +F GD +IDT+ I  RK+  + Q  WEEA   FR+ +  + A+G + + V
Sbjct:    2 AKPIDYSKWDHIDVSDDDEQEKSSRRQPTVTRFDAPQKVTFGGGRKDEALIQPPASAAAAAPAPPRIEEIEDLDQGDDDDDGGDEWPANEPMDIDTRPPIVCGTRRPGPADLTRNGGATDRYYWSQSRYGLTVSVMVPPDTGARDVRINL--DEQHLTVTCKGQT----VVDGALEHRVKTDE-DSWTWEVIDFDDTQVTTTTTTNGSAAASSAPPRPSRRLVQLTLQKSERAAELGFFVWWSCIFQGDPKIDTASIEDRKIDPDTQKRWEEAHSMFRQQLREKKAKGLLPMSV 288          
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|1206245861|ref|XP_021338807.1| (conserved Plasmodium protein, unknown function [Babesia microti strain RI] >gi|1139688991|emb|SJK86678.1| conserved Plasmodium protein, unknown function [Babesia microti strain RI])

HSP 1 Score: 74.7146 bits (182), Expect = 1.953e-12
Identity = 66/233 (28.33%), Postives = 98/233 (42.06%), Query Frame = 0
Query:    5 PIDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTV--GGHDHLIPSR-SPAPSPSSTTPHPASR-IEDISENGQSFP-TFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVR------VSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRK---MNFQGAWEEAQRRFREDVAR 223
            PIDYSKWD L  +  +DE ++   P VT F++P +VT+     D+L  +  S   S    T  P  R +E+   NG      + W Q R      I  PP T+ K++ V  T +    S+ IT  +   V+++      +   E +   WE++            +         ++L K      +  WW   F GD  +D      RK    +F   WEEA R FRE VA 
Sbjct:    2 PIDYSKWDALLVTSSDDEPDR---PIVTKFDKPKTVTIPYCSSDNLAQNNTSNVSSDKVPTREPQRRKLENYCINGGIVDNCYAWGQSRFNVWAIISLPPDTKGKNLNVVLTNE----SLTITDVSLPVVIIDKTFPFTVN-SEYDYYNWEILPHCNFVNDDPFNKLFHKRVIFEITLTKLEKFEAICSWWPCFFQGDPSVDVESFKDRKGDNKSFMKNWEEANRMFREKVAN 226          
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|551672756|ref|XP_005839134.1| (hypothetical protein GUITHDRAFT_102055 [Guillardia theta CCMP2712] >gi|428183296|gb|EKX52154.1| hypothetical protein GUITHDRAFT_102055 [Guillardia theta CCMP2712])

HSP 1 Score: 74.7146 bits (182), Expect = 3.392e-12
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 0
Query:   44 GHDHLIPSRSPAPSPSSTTPHPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGGREGGRGGGRAVRVSLIKSTP----------RPDMVHWWSRVFVGDDEIDTSRIAGRKM----NFQGAWEEAQRRFREDV 221
            G + L   RS   S +S     AS +  +S NG +   + W QDR E +++ + P  TRAKD+ V  T + + L+          V+++  L+ P+   E + ++WE+      +    G R +R+SL K+ P             ++ WW  VFVGD EID + I  RK       Q  W+EA  +F+  V
Sbjct:   86 GKEPLTEQRSSGTS-ASREEEIASSLARMSRNGGTCDQYIWSQDRHEVVINFFLPAGTRAKDMSVRLTSEKHLLA-----KNQEVVIIDRDLSYPVVNNE-DSLDWEL------KDFHDGRRLLRISLRKTLPGMTSLPALPVEESVILWWKCVFVGDAEIDVASIPDRKKKNLSTNQSVWKEAHEKFQHIV 264          
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|1098425209|gb|OII73345.1| (nuclear move domain-containing protein [Cryptosporidium ubiquitum])

HSP 1 Score: 67.3958 bits (163), Expect = 9.175e-10
Identity = 61/242 (25.21%), Postives = 96/242 (39.67%), Query Frame = 0
Query:    6 IDYSKWDHLDTSDDEDEEEKRGPPRVTHFNEPMSVTVGGH-----DHLIPSRSPAPSPSSTTPHPASRIEDISENGQSF-------PTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEW---EMVGEGGREGGRGGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIA--------GRKMNFQGAWEEAQRRFREDVARR 224
            IDYSKWD ++ S DE+  +      VT F+ P S+T+GG      D L+ S         T     SR + IS +   F         + W Q      + +   P T+ KD++V  T D      ++T       ++       ++ ++   + W   E+    G +  R   R + + L K      +  WW ++F G  E D S+ +         R   F  AWEEA   FR  +  R
Sbjct:    4 IDYSKWDKIEISSDEESGKLGSKCNVTRFDSPQSITIGGQRESKEDSLVSSNILVDDL-KTKSVLVSREKVISLDDYVFGGKSACGKDYYWTQTENGLTIILEIDPGTQNKDLKVNVTED------KVTVTHGSETILFEEFEYGVK-DDDNTIFWSVKEVESLNGAQNKR--SRMLVLELEKKELDTSIRLWWKKIFKGGIEADISKFSRFSSPKSEERNRKFLEAWEEAHNEFRNKIKNR 235          
BLAST of EWM21996.1 vs. NCBI_GenBank
Match: gi|255083416|ref|XP_002504694.1| (predicted protein [Micromonas commoda] >gi|226519962|gb|ACO65952.1| predicted protein [Micromonas commoda])

HSP 1 Score: 62.003 bits (149), Expect = 1.485e-7
Identity = 54/180 (30.00%), Postives = 76/180 (42.22%), Query Frame = 0
Query:   82 FTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGG---REGGR-----------GGGRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRK----MNFQGAWEEAQRRFREDVARRNAQGPVEVEVEGEVEGEGE 243
            + W Q+  E ++ +  PP T+AKDV V  T D   + +      +   LV+  +A+ I  E  ++ E E   +G    R  G            GG R VRV+  K      M HWW R      EIDT+ +  RK       Q  WEEA   F+E V  R    P+ +   G  E  G+
Sbjct:  208 YMWSQEHDECVLSVVVPPGTKAKDVVVECTEDRVKVVLANHALQSATTLVDDDIAHRIDPEPRDDEELERSVDGFDVPRVYGEWEVCDWEPQSLGGRRVVRVTFRKKGLGA-MTHWWRRALRSGKEIDTAALKCRKEGKAAESQKIWEEATAAFKESVKNRK---PIPIPYTGPSEDSGD 383          
The following BLAST results are available for this feature:
BLAST of EWM21996.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585102387|gb|EWM21996.1|0.000e+0100.00CS-like domain protein [Nannochloropsis gaditana][more]
gi|873222309|emb|CEM31509.1|9.743e-1827.89unnamed protein product [Vitrella brassicaformis C... [more]
gi|1206245861|ref|XP_021338807.1|1.953e-1228.33conserved Plasmodium protein, unknown function [Ba... [more]
gi|551672756|ref|XP_005839134.1|3.392e-1229.69hypothetical protein GUITHDRAFT_102055 [Guillardia... [more]
gi|1098425209|gb|OII73345.1|9.175e-1025.21nuclear move domain-containing protein [Cryptospor... [more]
gi|255083416|ref|XP_002504694.1|1.485e-730.00predicted protein [Micromonas commoda] >gi|2265199... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8706rna8706Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications