rna8704, rna8704 (mRNA) Nannochloropsis gaditana

Overview
Namerna8704
Unique Namerna8704
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationKK037249.1:627927..629253 -

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Properties
Property NameValue
Producttype peptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100909g2.3161.mrna
Orig protein idgnl|cribi|Naga_100909g2.3161
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:627927..629253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100909g2gene8437Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8704rna8704-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21998.1cds8675Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8704 ID=rna8704|Name=rna8704|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
ATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACATCCCTCACCTCAGGGA
GGAGGTGCAATTGATCGACGTGCGGGAACCGGACGAGCTCCTCCGGGCCG
AGATCAAAGGTTTCCTCAACCTGCCCTTGTCCCAGTTTGCAGAATGGCGA
CCCAAGATTCTTTCGGGGGAACTTCTGGATAAAAATAAAAAAACGGTCGT
GCTCTGTCACCATGGTGGAAGATCCATGCAATTCGCTTCCTTTTTGACGT
CTCAGGCGGGTTTTACCGAGGTGTACAATCTGTCGGGGGGAATCCATATG
TATGCACAACTGGTGGATAGCCGCATTCCCACGGGTCGATCCGGTTTCGA
TTTTTGTAGTGGTGCCCTGGATACCTTTGGGGACATGTCAAGGACAAATT
TTCAACGAGTATCGCAAGTTTTTAAGACGAAGCCAACGTTGAATCGGATA
TAA
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protein sequence of rna8704

>rna8704-protein ID=rna8704-protein|Name=rna8704|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MPRGPSDAVHAVVRQRAGGVETVLAVNCGFLVHSFMPFSAPHRHPLSFCL
VLWMLISCSMRLRPSVAFTIRALRPKPKHHPGVPTFSIARVHPVKLTFLH
TYRPATAGGTSVERTSWRSTAIRLMASTSTTPPDPRVKVRAAHILVKSEE
EADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG
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mRNA from alignment at KK037249.1:627927..629253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8704 ID=rna8704|Name=rna8704|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at KK037249.1:627927..629253- (Nannochloropsis gaditana)
ATGCCAAGGTATTCACGCGAAGAACTGAGCTAGCCCTCCCATGGAACATG
CCATGGGATTTTTTTTTTCAACAATCGCATGGACAGCGACACGCTGAACC
ATTTCCTATTGTAATCTAAAGGGTGTCCGAAGCACTTCTCAACTTTTTTT
GCAGCACGAGATCGCGCGCCGTTTTGGTCAGTAGGATTGCCGCCAGACGA
GAGACGGTAAAGGGGAAAGAAGGTCACACACGCACATCTTGCCAGTCTCG
GTTAATGAAAACTTGGCATTGGCCGATGCAAGCGTGACACGACAAATCGA
CGGGGCATTCACCTTGCTGGGTCTTTCCGAGGGGCCCAATAACAAACCAT
TGTTGTTCCTCTCAAGTGCAACTACAAGTCAGAGGACCGTCCGACGCAGT
GCACGCAGTGGTTAGGTAATTCAGTTTCACCACAAGCATCCATCCATTCA
TTCATGGACCAATTTACACACATCCACATACATCGGTCTTTAGGCAACGA
GCAGGAGGCGTAGAGACAGTGTTAGCAGTCAATTGTGGCTTTTTGGTTCA
CTCTTTCATGCCCTTTTCTGGTAAGATTAACTGCGGGAGGGCGATGTGGT
GGTGAGACGTCGGGCTATAATCAAGGTTGTGCCACTGCTCATTGTATTGT
ATTATCTTAACCTTCCTCTCCACGCACACCGTTGCACGTCACGACAGCGC
CGCACCGCCACCCTTTGTCTTTTTGCCTCGTGCTTTGGATGCTGATCTCG
TGTTCTATGCGCCTCCGCCCCAGTGTGGCCTTCACCATCCGGGCACTACG
ACCCAAACCCAAACACCACCCCGGCGTTCCAACTTTTTCCATCGCGCGTG
TCCACCCCGTCAAACTTACATTTCTCCACACATATCGACCTGCTACCGCG
GGGGGCACGTCGGTGGAAAGGACATCGTGGAGGTCGACAGCTATTCGCCT
CATGGCTTCCACGAGCACCACGCCTCCTGACCCCCGGGTGAAAGTGAGGG
CGGCGCATATCTTGGTGAGTCGGGCAACTGAAAGACGAAAAGAGCGTCTG
TCTGTGCGTTCAACGAACTAGGGAGGCAAGTTGGCAAAGTGGGCGTGAAA
TCGCACTCCCTCCCATCCCCAACCTCCCCTATTCTCCTACCCTGCCTTCC
ACCCACATCACCATCCCTTCCCCGTCCTTCCTCATCACTCCACAGGTCAA
AAGCGAGGAGGAAGCCGACGCCCTCATGGCCGTCCTTGAGAACGGCGCAG
ACTTCGCCGAGTTGGCCATGGTGGAGAGCGACTGTCCTTCCCGAAAACAG
GGCGGGGACCTGGGATGGTTCGGGTAG
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Coding sequence (CDS) from alignment at KK037249.1:627927..629253-

>rna8704 ID=rna8704|Name=rna8704|organism=Nannochloropsis gaditana|type=CDS|length=2835bp|location=Sequence derived from alignment at KK037249.1:627927..629253- (Nannochloropsis gaditana)
GTCAAAAGCGAGGAGGAAGCCGACGCCCTCATGGCCGTCCTTGAGAACGG
CGCAGACTTCGCCGAGTTGGCCATGGTGGAGAGCGACTGTCCTTCCCGAA
AACAGGGCGGGGACCTGGGATGGTTCGGGTAGCGCCGCACCGCCACCCTT
TGTCTTTTTGCCTCGTGCTTTGGATGCTGATCTCGTGTTCTATGCGCCTC
CGCCCCAGTGTGGCCTTCACCATCCGGGCACTACGACCCAAACCCAAACA
CCACCCCGGCGTTCCAACTTTTTCCATCGCGCGTGTCCACCCCGTCAAAC
TTACATTTCTCCACACATATCGACCTGCTACCGCGGGGGGCACGTCGGTG
GAAAGGACATCGTGGAGGTCGACAGCTATTCGCCTCATGGCTTCCACGAG
CACCACGCCTCCTGACCCCCGGGTGAAAGTGAGGGCGGCGCATATCTTGG
CAACGAGCAGGAGGCGTAGAGACAGTGTTAGCAGTCAATTGTGGCTTTTT
GGTTCACTCTTTCATGCCCTTTTCTGAGGACCGTCCGACGCAGTGCACGC
AGTGGTTAGATGCCAAGGTCAAAAGCGAGGAGGAAGCCGACGCCCTCATG
GCCGTCCTTGAGAACGGCGCAGACTTCGCCGAGTTGGCCATGGTGGAGAG
CGACTGTCCTTCCCGAAAACAGGGCGGGGACCTGGGATGGTTCGGGTAGC
GCCGCACCGCCACCCTTTGTCTTTTTGCCTCGTGCTTTGGATGCTGATCT
CGTGTTCTATGCGCCTCCGCCCCAGTGTGGCCTTCACCATCCGGGCACTA
CGACCCAAACCCAAACACCACCCCGGCGTTCCAACTTTTTCCATCGCGCG
TGTCCACCCCGTCAAACTTACATTTCTCCACACATATCGACCTGCTACCG
CGGGGGGCACGTCGGTGGAAAGGACATCGTGGAGGTCGACAGCTATTCGC
CTCATGGCTTCCACGAGCACCACGCCTCCTGACCCCCGGGTGAAAGTGAG
GGCGGCGCATATCTTGGCAACGAGCAGGAGGCGTAGAGACAGTGTTAGCA
GTCAATTGTGGCTTTTTGGTTCACTCTTTCATGCCCTTTTCTGAGGACCG
TCCGACGCAGTGCACGCAGTGGTTAGATGCCAAGGTCAAAAGCGAGGAGG
AAGCCGACGCCCTCATGGCCGTCCTTGAGAACGGCGCAGACTTCGCCGAG
TTGGCCATGGTGGAGAGCGACTGTCCTTCCCGAAAACAGGGCGGGGACCT
GGGATGGTTCGGGTAGCGCCGCACCGCCACCCTTTGTCTTTTTGCCTCGT
GCTTTGGATGCTGATCTCGTGTTCTATGCGCCTCCGCCCCAGTGTGGCCT
TCACCATCCGGGCACTACGACCCAAACCCAAACACCACCCCGGCGTTCCA
ACTTTTTCCATCGCGCGTGTCCACCCCGTCAAACTTACATTTCTCCACAC
ATATCGACCTGCTACCGCGGGGGGCACGTCGGTGGAAAGGACATCGTGGA
GGTCGACAGCTATTCGCCTCATGGCTTCCACGAGCACCACGCCTCCTGAC
CCCCGGGTGAAAGTGAGGGCGGCGCATATCTTGGCAACGAGCAGGAGGCG
TAGAGACAGTGTTAGCAGTCAATTGTGGCTTTTTGGTTCACTCTTTCATG
CCCTTTTCTGAGGACCGTCCGACGCAGTGCACGCAGTGGTTAGATGCCAA
GGTCAAAAGCGAGGAGGAAGCCGACGCCCTCATGGCCGTCCTTGAGAACG
GCGCAGACTTCGCCGAGTTGGCCATGGTGGAGAGCGACTGTCCTTCCCGA
AAACAGGGCGGGGACCTGGGATGGTTCGGGTAGCGCCGCACCGCCACCCT
TTGTCTTTTTGCCTCGTGCTTTGGATGCTGATCTCGTGTTCTATGCGCCT
CCGCCCCAGTGTGGCCTTCACCATCCGGGCACTACGACCCAAACCCAAAC
ACCACCCCGGCGTTCCAACTTTTTCCATCGCGCGTGTCCACCCCGTCAAA
CTTACATTTCTCCACACATATCGACCTGCTACCGCGGGGGGCACGTCGGT
GGAAAGGACATCGTGGAGGTCGACAGCTATTCGCCTCATGGCTTCCACGA
GCACCACGCCTCCTGACCCCCGGGTGAAAGTGAGGGCGGCGCATATCTTG
GCAACGAGCAGGAGGCGTAGAGACAGTGTTAGCAGTCAATTGTGGCTTTT
TGGTTCACTCTTTCATGCCCTTTTCTGAGGACCGTCCGACGCAGTGCACG
CAGTGGTTAGATGCCAAGGTCAAAAGCGAGGAGGAAGCCGACGCCCTCAT
GGCCGTCCTTGAGAACGGCGCAGACTTCGCCGAGTTGGCCATGGTGGAGA
GCGACTGTCCTTCCCGAAAACAGGGCGGGGACCTGGGATGGTTCGGGTAG
CGCCGCACCGCCACCCTTTGTCTTTTTGCCTCGTGCTTTGGATGCTGATC
TCGTGTTCTATGCGCCTCCGCCCCAGTGTGGCCTTCACCATCCGGGCACT
ACGACCCAAACCCAAACACCACCCCGGCGTTCCAACTTTTTCCATCGCGC
GTGTCCACCCCGTCAAACTTACATTTCTCCACACATATCGACCTGCTACC
GCGGGGGGCACGTCGGTGGAAAGGACATCGTGGAGGTCGACAGCTATTCG
CCTCATGGCTTCCACGAGCACCACGCCTCCTGACCCCCGGGTGAAAGTGA
GGGCGGCGCATATCTTGGCAACGAGCAGGAGGCGTAGAGACAGTGTTAGC
AGTCAATTGTGGCTTTTTGGTTCACTCTTTCATGCCCTTTTCTGAGGACC
GTCCGACGCAGTGCACGCAGTGGTTAGATGCCAAG
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Synonyms
Publications