EWM21998.1, cds8675 (CDS) Nannochloropsis gaditana

Overview
NameEWM21998.1
Unique Namecds8675
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:629246..629253 -
Alignment locationKK037249.1:628839..628871 -
Alignment locationKK037249.1:628684..628760 -
Alignment locationKK037249.1:628240..628556 -
Alignment locationKK037249.1:627927..628058 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21998.1
Producttype peptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100909g2.3161.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:629246..629253 -
KK037249.1supercontigKK037249.1:628839..628871 -
KK037249.1supercontigKK037249.1:628684..628760 -
KK037249.1supercontigKK037249.1:628240..628556 -
KK037249.1supercontigKK037249.1:627927..628058 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016853isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR000297PPIase_PpiC
IPR023058PPIase_PpiC_CS
Homology
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|585102390|gb|EWM21998.1| (type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 383.259 bits (983), Expect = 9.600e-135
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MPRGPSDAVHAVVRQRAGGVETVLAVNCGFLVHSFMPFSAPHRHPLSFCLVLWMLISCSMRLRPSVAFTIRALRPKPKHHPGVPTFSIARVHPVKLTFLHTYRPATAGGTSVERTSWRSTAIRLMASTSTTPPDPRVKVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            MPRGPSDAVHAVVRQRAGGVETVLAVNCGFLVHSFMPFSAPHRHPLSFCLVLWMLISCSMRLRPSVAFTIRALRPKPKHHPGVPTFSIARVHPVKLTFLHTYRPATAGGTSVERTSWRSTAIRLMASTSTTPPDPRVKVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG
Sbjct:    1 MPRGPSDAVHAVVRQRAGGVETVLAVNCGFLVHSFMPFSAPHRHPLSFCLVLWMLISCSMRLRPSVAFTIRALRPKPKHHPGVPTFSIARVHPVKLTFLHTYRPATAGGTSVERTSWRSTAIRLMASTSTTPPDPRVKVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|1008853350|gb|KYK36045.1| (peptidylprolyl isomerase [Theionarchaea archaeon DG-70-1])

HSP 1 Score: 71.2478 bits (173), Expect = 4.894e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            +V+A+HILVK   EA+ ++  L+ GA FAELA   S+CPSRK+GGDLGWFG
Sbjct:    3 QVKASHILVKKRSEAEKILEELKKGASFAELAKKHSECPSRKRGGDLGWFG 53          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|1085041192|gb|OGS44319.1| (peptidylprolyl isomerase [Euryarchaeota archaeon RBG_13_57_23])

HSP 1 Score: 69.707 bits (169), Expect = 2.093e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            +V AAHILVKSE +A+ L+  + +G +F ELA   SDCPS++ GGDLGWFG
Sbjct:    4 QVHAAHILVKSENQANELLGRINSGENFGELAKKYSDCPSKRSGGDLGWFG 54          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|1085056197|gb|OGS56740.1| (peptidylprolyl isomerase [Euryarchaeota archaeon RBG_19FT_COMBO_56_21])

HSP 1 Score: 68.9366 bits (167), Expect = 4.268e-12
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            +V AAHILVK+E +A  L+  + +G +F ELA   SDCPS+K GGDLGWFG
Sbjct:    4 QVHAAHILVKTENQAKELLGRVNSGENFGELAKKYSDCPSKKSGGDLGWFG 54          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|998172808|gb|KXH72534.1| (peptidylprolyl isomerase [Candidatus Thorarchaeota archaeon SMTZ1-83])

HSP 1 Score: 68.5514 bits (166), Expect = 5.971e-12
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            K+RA+HILVK   +A  +++ +  G DFA +A   SDCPSRK+GGDLGWFG
Sbjct:    9 KIRASHILVKKHSQALEIISRIREGEDFASMAKQSSDCPSRKKGGDLGWFG 59          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|940130343|gb|KPX46846.1| (PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas ficuserectae])

HSP 1 Score: 68.1662 bits (165), Expect = 6.669e-12
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            K  A HILV SEE+ + L A +E GADFAE+A V S CPS +QGGDLG FG
Sbjct:    3 KATARHILVSSEEKCNELKAQIEGGADFAEIAKVNSSCPSSRQGGDLGSFG 53          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|940028517|gb|KPW53502.1| (PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas caricapapayae] >gi|940282444|gb|KPY89064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tagetis])

HSP 1 Score: 68.5514 bits (166), Expect = 6.755e-12
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0
Query:  135 PRVKVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            P  K  A HILV SEE+ + L A +E GADFAE+A   S CPS +QGGDLG FG
Sbjct:    3 PMAKATARHILVSSEEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFG 56          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|503093320|ref|WP_013328145.1| (MULTISPECIES: peptidyl-prolyl cis-trans isomerase [Methanolacinia] >gi|307155586|gb|ADN34966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanolacinia petrolearia DSM 11571])

HSP 1 Score: 68.1662 bits (165), Expect = 7.577e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            KVRA+HILV SE+EA  ++A L +G +F ELA   S CPS ++GGDLGWFG
Sbjct:    4 KVRASHILVNSEKEAKDILAKLNSGENFEELAKKYSTCPSGRKGGDLGWFG 54          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|1172329306|ref|WP_080712584.1| (peptidylprolyl isomerase [Pseudomonas brassicacearum])

HSP 1 Score: 67.781 bits (164), Expect = 1.436e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query:  134 DPRVKVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            DP  K  A HILV +E++ + L A +E GADFAE+A   S CPS +QGGDLG FG
Sbjct:   16 DPMAKATARHILVATEDKCNELKAQIEGGADFAEVAKANSSCPSSRQGGDLGSFG 70          
BLAST of EWM21998.1 vs. NCBI_GenBank
Match: gi|1008851608|gb|KYK34379.1| (peptidylprolyl isomerase [Theionarchaea archaeon DG-70])

HSP 1 Score: 67.3958 bits (163), Expect = 1.638e-11
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0
Query:  138 KVRAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFG 188
            +V+A+HILVK   +A+ ++  L+ GA FA+LA   S+CPS+K+GGDLGWFG
Sbjct:    3 QVKASHILVKKRSQAEKILEELKKGASFAKLAQEYSECPSKKRGGDLGWFG 53          
The following BLAST results are available for this feature:
BLAST of EWM21998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102390|gb|EWM21998.1|9.600e-135100.00type peptidyl-prolyl cis-trans isomerase [Nannochl... [more]
gi|1008853350|gb|KYK36045.1|4.894e-1360.78peptidylprolyl isomerase [Theionarchaea archaeon D... [more]
gi|1085041192|gb|OGS44319.1|2.093e-1258.82peptidylprolyl isomerase [Euryarchaeota archaeon R... [more]
gi|1085056197|gb|OGS56740.1|4.268e-1258.82peptidylprolyl isomerase [Euryarchaeota archaeon R... [more]
gi|998172808|gb|KXH72534.1|5.971e-1256.86peptidylprolyl isomerase [Candidatus Thorarchaeota... [more]
gi|940130343|gb|KPX46846.1|6.669e-1262.75PpiC-type peptidyl-prolyl cis-trans isomerase [Pse... [more]
gi|940028517|gb|KPW53502.1|6.755e-1259.26PpiC-type peptidyl-prolyl cis-trans isomerase [Pse... [more]
gi|503093320|ref|WP_013328145.1|7.577e-1260.78MULTISPECIES: peptidyl-prolyl cis-trans isomerase ... [more]
gi|1172329306|ref|WP_080712584.1|1.436e-1156.36peptidylprolyl isomerase [Pseudomonas brassicacear... [more]
gi|1008851608|gb|KYK34379.1|1.638e-1154.90peptidylprolyl isomerase [Theionarchaea archaeon D... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8704rna8704Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications