rna8703, rna8703 (mRNA) Nannochloropsis gaditana

Overview
Namerna8703
Unique Namerna8703
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length384
Alignment locationKK037249.1:626774..627567 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase c
Orig transcript idgnl|cribi|Naga_101576g1.1483.mrna
Orig protein idgnl|cribi|Naga_101576g1.1483
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:626774..627567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101576g1gene8436Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8703rna8703-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21999.1cds8674Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8703 ID=rna8703|Name=rna8703|organism=Nannochloropsis gaditana|type=mRNA|length=384bp
ATGCCTTCCAACAATAAAGCACATTATTTTCCTTACAGCGGAATTGTGAC
GAGAGTCAAGGAATCCAGCATTTTGCCTATTGTGGTCTGGCGGCGTGGCA
ATGGCTCCCTCTGCAGCTCCTCTCACGCATCATTTTTTAGAACTCGTCCC
TGCCCGACATCGTCCCGTACTTGGGGAGTACGATCAGTATTTTTACGATG
CGGCGCAAGAACACTTCCTCCTAATCAAAGATAATATGTATAGAATTTTG
CCACGGGGAGCCTCAAGACCTTCACAGCCTGTGCATTACGACAGCACGGG
ACGCGACTGCCTCTATGCTATCATGTCACTTGACAACACCTTGCTTGCCA
TCCAGCGCAACCGCTGCTGGGTCGAGGTAGGGAG
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protein sequence of rna8703

>rna8703-protein ID=rna8703-protein|Name=rna8703|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWR
PKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHM
YAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI
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mRNA from alignment at KK037249.1:626774..627567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8703 ID=rna8703|Name=rna8703|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at KK037249.1:626774..627567- (Nannochloropsis gaditana)
ATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACATCCCTCACCTCAGGTC
AACGGCAAAGCGACCGCACCTGGAGACTGGCATCCGTCTCAACTGGGAGA
CCTGGTGGCGGGGGGCCAGGAAGGGAGGGAGGAGGTGCAATTGATCGACG
TGCGGGAACCGGACGAGCTCCTCCGGGCCGAGATCAAAGGTAAGGACGCA
CTCGAAGTCTCTGCGGACGTGTTTAGACCCTGGAGCGATTTTTCAAGAAA
AATCTGATGACATCCCTCCCTCCCTTTTTCTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCCTCGCCAAGGCGCAGGTTTCCTCAACCTGCCCTTGTCCC
AGTTTGCAGAATGGCGACCCAAGATTCTTTCGGGGGAACTTCTGGATAAA
AATAAAAAAACGGTCGTGCTCTGTCACCATGGTGGAAGATCCATGCAATT
CGCTTCCTTTTTGACGTCTCAGGCGGGTTTTACCGAGGTGTACAATCTGT
CGGGGGGAATCCATATGTATGCACAACTGGTGGATAGCCGCATTCCCACG
TACTGAGGCTGGCGATAAAACGGGTTGACGGAGCGGCTCAGGCAGTGTGC
GGTGGGAAAGGCGACGCAGGGGAAGGGATGGATGAACAAATTGCAATATC
GATGAAATATACGAACTTTTAAGGGGTCGATCCGGTTTCGATTTTTGTAG
TGGTGCCCTGGATACCTTTGGGGACATGTCAAGGACAAATTTTCAACGAG
TATCGCAAGTTTTTAAGACGAAGCCAACGTTGAATCGGATATAA
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Coding sequence (CDS) from alignment at KK037249.1:626774..627567-

>rna8703 ID=rna8703|Name=rna8703|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at KK037249.1:626774..627567- (Nannochloropsis gaditana)
GGGTCGATCCGGTTTCGATTTTTGTAGTGGTGCCCTGGATACCTTTGGGG
ACATGTCAAGGACAAATTTTCAACGAGTATCGCAAGTTTTTAAGACGAAG
CCAACGTTGAATCGGATATAAGTTTCCTCAACCTGCCCTTGTCCCAGTTT
GCAGAATGGCGACCCAAGATTCTTTCGGGGGAACTTCTGGATAAAAATAA
AAAAACGGTCGTGCTCTGTCACCATGGTGGAAGATCCATGCAATTCGCTT
CCTTTTTGACGTCTCAGGCGGGTTTTACCGAGGTGTACAATCTGTCGGGG
GGAATCCATATGTATGCACAACTGGTGGATAGCCGCATTCCCACGGAGGA
GGTGCAATTGATCGACGTGCGGGAACCGGACGAGCTCCTCCGGGCCGAGA
TCAAAGATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACATCCCTCACCT
CAGGGGTCGATCCGGTTTCGATTTTTGTAGTGGTGCCCTGGATACCTTTG
GGGACATGTCAAGGACAAATTTTCAACGAGTATCGCAAGTTTTTAAGACG
AAGCCAACGTTGAATCGGATATAAGTTTCCTCAACCTGCCCTTGTCCCAG
TTTGCAGAATGGCGACCCAAGATTCTTTCGGGGGAACTTCTGGATAAAAA
TAAAAAAACGGTCGTGCTCTGTCACCATGGTGGAAGATCCATGCAATTCG
CTTCCTTTTTGACGTCTCAGGCGGGTTTTACCGAGGTGTACAATCTGTCG
GGGGGAATCCATATGTATGCACAACTGGTGGATAGCCGCATTCCCACGGA
GGAGGTGCAATTGATCGACGTGCGGGAACCGGACGAGCTCCTCCGGGCCG
AGATCAAAGATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACATCCCTCA
CCTCAGGGGTCGATCCGGTTTCGATTTTTGTAGTGGTGCCCTGGATACCT
TTGGGGACATGTCAAGGACAAATTTTCAACGAGTATCGCAAGTTTTTAAG
ACGAAGCCAACGTTGAATCGGATATAAGTTTCCTCAACCTGCCCTTGTCC
CAGTTTGCAGAATGGCGACCCAAGATTCTTTCGGGGGAACTTCTGGATAA
AAATAAAAAAACGGTCGTGCTCTGTCACCATGGTGGAAGATCCATGCAAT
TCGCTTCCTTTTTGACGTCTCAGGCGGGTTTTACCGAGGTGTACAATCTG
TCGGGGGGAATCCATATGTATGCACAACTGGTGGATAGCCGCATTCCCAC
GGAGGAGGTGCAATTGATCGACGTGCGGGAACCGGACGAGCTCCTCCGGG
CCGAGATCAAAGATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACATCCC
TCACCTCAGGGGTCGATCCGGTTTCGATTTTTGTAGTGGTGCCCTGGATA
CCTTTGGGGACATGTCAAGGACAAATTTTCAACGAGTATCGCAAGTTTTT
AAGACGAAGCCAACGTTGAATCGGATATAAGTTTCCTCAACCTGCCCTTG
TCCCAGTTTGCAGAATGGCGACCCAAGATTCTTTCGGGGGAACTTCTGGA
TAAAAATAAAAAAACGGTCGTGCTCTGTCACCATGGTGGAAGATCCATGC
AATTCGCTTCCTTTTTGACGTCTCAGGCGGGTTTTACCGAGGTGTACAAT
CTGTCGGGGGGAATCCATATGTATGCACAACTGGTGGATAGCCGCATTCC
CACGGAGGAGGTGCAATTGATCGACGTGCGGGAACCGGACGAGCTCCTCC
GGGCCGAGATCAAAGATGGCGCTCCTCCCCCTGCCCCTGGCCAACAACAT
CCCTCACCTCAG
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Synonyms
Publications