EWM21999.1, cds8674 (CDS) Nannochloropsis gaditana

Overview
NameEWM21999.1
Unique Namecds8674
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:627521..627567 -
Alignment locationKK037249.1:627379..627440 -
Alignment locationKK037249.1:627019..627241 -
Alignment locationKK037249.1:626774..626894 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21999.1
Productpeptidyl-prolyl cis-trans isomerase c
Orig transcript idgnl|cribi|Naga_101576g1.1483.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:627521..627567 -
KK037249.1supercontigKK037249.1:627379..627440 -
KK037249.1supercontigKK037249.1:627019..627241 -
KK037249.1supercontigKK037249.1:626774..626894 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001763Rhodanese-like_dom
Homology
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|585102392|gb|EWM21999.1| (peptidyl-prolyl cis-trans isomerase c [Nannochloropsis gaditana])

HSP 1 Score: 312.383 bits (799), Expect = 7.106e-108
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI 150
            MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI
Sbjct:    1 MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI 150          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|168041763|ref|XP_001773360.1| (predicted protein [Physcomitrella patens] >gi|162675402|gb|EDQ61898.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 115.546 bits (288), Expect = 4.765e-29
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P   +  QL+DVREPDE+  A I+GF + PLSQF +W P +   E LD +K T VLCHHG RS+Q A++L SQ GFT +YN+SGGIH Y+  VD+RIPT
Sbjct:  141 PEFLQNAQLLDVREPDEIATASIEGFKSYPLSQFGKWAPTV--AEDLDPSKDTFVLCHHGMRSLQAANWLKSQ-GFTRLYNISGGIHAYSVKVDNRIPT 236          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|937928390|dbj|BAT03307.1| (Os07g0687500, partial [Oryza sativa Japonica Group])

HSP 1 Score: 110.923 bits (276), Expect = 9.541e-29
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P+  EE QLIDVREPDE+ +A ++GF  LPL QF  W P +++ E  D  K T VLCHHG RSMQ A +L SQ GF +VYN++GGIH YA   DS IPT
Sbjct:   18 PNFLEEAQLIDVREPDEVDKASLEGFKVLPLRQFGTWGP-VMTDE-FDPQKDTYVLCHHGMRSMQVAKWLQSQ-GFRKVYNVAGGIHAYAVKADSSIPT 113          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|504980369|ref|WP_015167471.1| (rhodanese-related sulfurtransferase [Synechococcus sp. PCC 7502] >gi|427994117|gb|AFY72812.1| Rhodanese-related sulfurtransferase [Synechococcus sp. PCC 7502])

HSP 1 Score: 109.383 bits (272), Expect = 4.380e-28
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   19 VQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            VQLIDVREP+EL  A + GF+NLPLSQFA W  +I S  LLD++ +T+VLCHHG RSMQ   +L  Q GFT V N++ GI  Y+QLVD  IP 
Sbjct:   30 VQLIDVREPEELAIAHLDGFINLPLSQFANWGNQIHS--LLDRDTETLVLCHHGVRSMQMCQWLVQQ-GFTNVKNIAHGIDAYSQLVDDSIPV 119          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1021488500|ref|XP_016187232.1| (rhodanese-like/PpiC domain-containing protein 12, chloroplastic [Arachis ipaensis])

HSP 1 Score: 114.005 bits (284), Expect = 6.547e-28
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P+  EE QLIDVREPDE+ +A + GF  LPL QF  W P++ +    D NK T V+CHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD  +PT
Sbjct:  211 PNFLEEAQLIDVREPDEVAKASLPGFKVLPLRQFGVWGPEVATS--FDPNKDTYVMCHHGMRSLQVAKWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 306          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1012201790|ref|XP_015973394.1| (rhodanese-like/PpiC domain-containing protein 12, chloroplastic [Arachis duranensis])

HSP 1 Score: 114.005 bits (284), Expect = 6.948e-28
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P+  EE QLIDVREPDE+ +A + GF  LPL QF  W P++ +    D NK T V+CHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD  +PT
Sbjct:  208 PNFLEEAQLIDVREPDEVAKASLPGFKVLPLRQFGVWGPEVATN--FDPNKDTYVMCHHGMRSLQVAKWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 303          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|504930273|ref|WP_015117375.1| (rhodanese-related sulfurtransferase [Rivularia sp. PCC 7116] >gi|427369841|gb|AFY53797.1| Rhodanese-related sulfurtransferase [Rivularia sp. PCC 7116])

HSP 1 Score: 107.457 bits (267), Expect = 1.795e-27
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    8 LANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIP 110
            LA  +      VQL+DVREP E+  A I GF+NLPLSQFA+W   + S   L+ +K+T+VLCHHG RS Q   +LTSQ GFT V N++GGI  Y+ LVD  +P
Sbjct:    9 LAKRLSSSESSVQLVDVREPQEVSTASITGFINLPLSQFADWSNDVHSR--LEPDKETLVLCHHGVRSAQMCQWLTSQ-GFTNVKNITGGIDAYSMLVDPSVP 108          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|502098420|ref|XP_004491230.1| (PREDICTED: rhodanese-like/PpiC domain-containing protein 12 [Cicer arietinum])

HSP 1 Score: 112.464 bits (280), Expect = 2.118e-27
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P+  EE QLIDVREPDE+ +A + GF  LPL QF  W P+I S    +  K T VLCHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD  +PT
Sbjct:  196 PNFSEEAQLIDVREPDEVTKASLPGFTVLPLRQFGSWGPEINSK--FNPEKDTYVLCHHGVRSLQVARWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 291          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|125601574|gb|EAZ41150.1| (hypothetical protein OsJ_25646 [Oryza sativa Japonica Group])

HSP 1 Score: 110.923 bits (276), Expect = 2.486e-27
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P+  EE QLIDVREPDE+ +A ++GF  LPL QF  W P +++ E  D  K T VLCHHG RSMQ A +L SQ GF +VYN++GGIH YA   DS IPT
Sbjct:  143 PNFLEEAQLIDVREPDEVDKASLEGFKVLPLRQFGTWGP-VMTDE-FDPQKDTYVLCHHGMRSMQVAKWLQSQ-GFRKVYNVAGGIHAYAVKADSSIPT 238          
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1040906035|ref|XP_017216156.1| (PREDICTED: rhodanese-like/PpiC domain-containing protein 12, chloroplastic isoform X2 [Daucus carota subsp. sativus])

HSP 1 Score: 110.153 bits (274), Expect = 2.824e-27
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
            P   EEVQLIDVREP+E+ RA + GF   PL QF  W P+I S   LD  K T VLCHHG RS+Q A +L +Q GF+ +YN+SGGIH YA   D  +PT
Sbjct:  122 PSFIEEVQLIDVREPEEVERASLPGFQVFPLQQFGSWGPEITSK--LDPQKDTYVLCHHGVRSLQVAKWLQTQ-GFSTIYNISGGIHAYAVKADPTVPT 217          
The following BLAST results are available for this feature:
BLAST of EWM21999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102392|gb|EWM21999.1|7.106e-108100.00peptidyl-prolyl cis-trans isomerase c [Nannochloro... [more]
gi|168041763|ref|XP_001773360.1|4.765e-2956.57predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|937928390|dbj|BAT03307.1|9.541e-2957.58Os07g0687500, partial [Oryza sativa Japonica Group... [more]
gi|504980369|ref|WP_015167471.1|4.380e-2859.14rhodanese-related sulfurtransferase [Synechococcus... [more]
gi|1021488500|ref|XP_016187232.1|6.547e-2855.56rhodanese-like/PpiC domain-containing protein 12, ... [more]
gi|1012201790|ref|XP_015973394.1|6.948e-2855.56rhodanese-like/PpiC domain-containing protein 12, ... [more]
gi|504930273|ref|WP_015117375.1|1.795e-2752.43rhodanese-related sulfurtransferase [Rivularia sp.... [more]
gi|502098420|ref|XP_004491230.1|2.118e-2756.57PREDICTED: rhodanese-like/PpiC domain-containing p... [more]
gi|125601574|gb|EAZ41150.1|2.486e-2757.58hypothetical protein OsJ_25646 [Oryza sativa Japon... [more]
gi|1040906035|ref|XP_017216156.1|2.824e-2755.56PREDICTED: rhodanese-like/PpiC domain-containing p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8703rna8703Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications