EWM21999.1, cds8674 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|585102392|gb|EWM21999.1| (peptidyl-prolyl cis-trans isomerase c [Nannochloropsis gaditana]) HSP 1 Score: 312.383 bits (799), Expect = 7.106e-108 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query: 1 MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI 150
MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI
Sbjct: 1 MALLPLPLANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTGRSGFDFCSGALDTFGDMSRTNFQRVSQVFKTKPTLNRI 150
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|168041763|ref|XP_001773360.1| (predicted protein [Physcomitrella patens] >gi|162675402|gb|EDQ61898.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 115.546 bits (288), Expect = 4.765e-29 Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P + QL+DVREPDE+ A I+GF + PLSQF +W P + E LD +K T VLCHHG RS+Q A++L SQ GFT +YN+SGGIH Y+ VD+RIPT
Sbjct: 141 PEFLQNAQLLDVREPDEIATASIEGFKSYPLSQFGKWAPTV--AEDLDPSKDTFVLCHHGMRSLQAANWLKSQ-GFTRLYNISGGIHAYSVKVDNRIPT 236
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|937928390|dbj|BAT03307.1| (Os07g0687500, partial [Oryza sativa Japonica Group]) HSP 1 Score: 110.923 bits (276), Expect = 9.541e-29 Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P+ EE QLIDVREPDE+ +A ++GF LPL QF W P +++ E D K T VLCHHG RSMQ A +L SQ GF +VYN++GGIH YA DS IPT
Sbjct: 18 PNFLEEAQLIDVREPDEVDKASLEGFKVLPLRQFGTWGP-VMTDE-FDPQKDTYVLCHHGMRSMQVAKWLQSQ-GFRKVYNVAGGIHAYAVKADSSIPT 113
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|504980369|ref|WP_015167471.1| (rhodanese-related sulfurtransferase [Synechococcus sp. PCC 7502] >gi|427994117|gb|AFY72812.1| Rhodanese-related sulfurtransferase [Synechococcus sp. PCC 7502]) HSP 1 Score: 109.383 bits (272), Expect = 4.380e-28 Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0
Query: 19 VQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
VQLIDVREP+EL A + GF+NLPLSQFA W +I S LLD++ +T+VLCHHG RSMQ +L Q GFT V N++ GI Y+QLVD IP
Sbjct: 30 VQLIDVREPEELAIAHLDGFINLPLSQFANWGNQIHS--LLDRDTETLVLCHHGVRSMQMCQWLVQQ-GFTNVKNIAHGIDAYSQLVDDSIPV 119
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1021488500|ref|XP_016187232.1| (rhodanese-like/PpiC domain-containing protein 12, chloroplastic [Arachis ipaensis]) HSP 1 Score: 114.005 bits (284), Expect = 6.547e-28 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P+ EE QLIDVREPDE+ +A + GF LPL QF W P++ + D NK T V+CHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD +PT
Sbjct: 211 PNFLEEAQLIDVREPDEVAKASLPGFKVLPLRQFGVWGPEVATS--FDPNKDTYVMCHHGMRSLQVAKWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 306
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1012201790|ref|XP_015973394.1| (rhodanese-like/PpiC domain-containing protein 12, chloroplastic [Arachis duranensis]) HSP 1 Score: 114.005 bits (284), Expect = 6.948e-28 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P+ EE QLIDVREPDE+ +A + GF LPL QF W P++ + D NK T V+CHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD +PT
Sbjct: 208 PNFLEEAQLIDVREPDEVAKASLPGFKVLPLRQFGVWGPEVATN--FDPNKDTYVMCHHGMRSLQVAKWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 303
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|504930273|ref|WP_015117375.1| (rhodanese-related sulfurtransferase [Rivularia sp. PCC 7116] >gi|427369841|gb|AFY53797.1| Rhodanese-related sulfurtransferase [Rivularia sp. PCC 7116]) HSP 1 Score: 107.457 bits (267), Expect = 1.795e-27 Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 0
Query: 8 LANNIPHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIP 110
LA + VQL+DVREP E+ A I GF+NLPLSQFA+W + S L+ +K+T+VLCHHG RS Q +LTSQ GFT V N++GGI Y+ LVD +P
Sbjct: 9 LAKRLSSSESSVQLVDVREPQEVSTASITGFINLPLSQFADWSNDVHSR--LEPDKETLVLCHHGVRSAQMCQWLTSQ-GFTNVKNITGGIDAYSMLVDPSVP 108
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|502098420|ref|XP_004491230.1| (PREDICTED: rhodanese-like/PpiC domain-containing protein 12 [Cicer arietinum]) HSP 1 Score: 112.464 bits (280), Expect = 2.118e-27 Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P+ EE QLIDVREPDE+ +A + GF LPL QF W P+I S + K T VLCHHG RS+Q A +L SQ GF +VYN+SGGIH YA+ VD +PT
Sbjct: 196 PNFSEEAQLIDVREPDEVTKASLPGFTVLPLRQFGSWGPEINSK--FNPEKDTYVLCHHGVRSLQVARWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPT 291
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|125601574|gb|EAZ41150.1| (hypothetical protein OsJ_25646 [Oryza sativa Japonica Group]) HSP 1 Score: 110.923 bits (276), Expect = 2.486e-27 Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P+ EE QLIDVREPDE+ +A ++GF LPL QF W P +++ E D K T VLCHHG RSMQ A +L SQ GF +VYN++GGIH YA DS IPT
Sbjct: 143 PNFLEEAQLIDVREPDEVDKASLEGFKVLPLRQFGTWGP-VMTDE-FDPQKDTYVLCHHGMRSMQVAKWLQSQ-GFRKVYNVAGGIHAYAVKADSSIPT 238
BLAST of EWM21999.1 vs. NCBI_GenBank
Match: gi|1040906035|ref|XP_017216156.1| (PREDICTED: rhodanese-like/PpiC domain-containing protein 12, chloroplastic isoform X2 [Daucus carota subsp. sativus]) HSP 1 Score: 110.153 bits (274), Expect = 2.824e-27 Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0
Query: 13 PHLREEVQLIDVREPDELLRAEIKGFLNLPLSQFAEWRPKILSGELLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPT 111
P EEVQLIDVREP+E+ RA + GF PL QF W P+I S LD K T VLCHHG RS+Q A +L +Q GF+ +YN+SGGIH YA D +PT
Sbjct: 122 PSFIEEVQLIDVREPEEVERASLPGFQVFPLQQFGSWGPEITSK--LDPQKDTYVLCHHGVRSLQVAKWLQTQ-GFSTIYNISGGIHAYAVKADPTVPT 217 The following BLAST results are available for this feature:
BLAST of EWM21999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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