rna870, rna870 (mRNA) Nannochloropsis gaditana

Overview
Namerna870
Unique Namerna870
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1233
Alignment locationCM002456.1:608647..610467 -

Link to JBrowse

Properties
Property NameValue
ProductFatty acid hydroxylase
Orig transcript idgnl|cribi|Naga_100017g62.359.mrna
Orig protein idgnl|cribi|Naga_100017g62.359
GeneSTE1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:608647..610467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
STE1gene833Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna870rna870-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29861.1cds870Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna870 ID=rna870|Name=rna870|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
CCCAAGGTTGACAACGCAGATCGTTTTAACCTCCCCACGCCTGCAGAAAA
TCGTTTTCCAATGATTTCATTATTCATTTCTTTACTTCGACAGGAAGAAA
TGGCCTTGTCATGGTGGCATAAAGCGAAAGGTGTGGTTTTCCCAAAAGCA
AGTCCAATTGTCAATGCCGTGCATCTGCAAGGCATAATCGCCGCCAGGGC
CGGGCCCCGCGGGGTGTCCTATGCCGCCCTAGAAAGCCATTTGGAAGCAG
CGTTCAAGGGCGTAGGAGTCCACACTCCGGACGCCGTCGCCCTAGTAGTA
AACTCGCCGGGGGGCAGTCCAGTGCAGAGCAATTTGATCGGACACAAAAT
TCAAACATTGCATGAGAAGTATAAGGTTCCCGTTTGGGCCTTCGCCGAGG
TGAAGTGGGTTGGAGGGAAAGAGGCAGGCAGGGATACCCGAAAGCTAGTA
GACCTCTTCGTCACCGAATGCCCTCCATCGCGTGTACATACTCGATGGCC
ATTTTCCCGCAGGACGTGGCCGCGAGTGGGGGCTACTGGCTGCTTGCCGC
CGGGCAGGAGGTCTACGCGGACAAGGCCAGCATCGTGGGCTCTGTCGGCG
TTGTCTCTGGGGGCTTCGGCCTGCACAAGCTTCTGGAACACCACGGGATA
GAGCGACGGCTGCACACGGCGGGGACGTCCAAGGCACGCCTGGACCCTTT
CCTCCCGGCTCGAGCGGAGGACGTGGCGTACCTGAGAGACACGTTGGCCG
AGATCCACGAGGTCTTCAAAGCGCACGTCAGAGCCCGGCGGGGGGCGAAG
ATCTCAGGGCACGAGAGCACTATTTTCAGCGGGGACTTCTTCACCGGGGC
GCGAGGGGTAGAGCTGGGCCTGGTGGACGCAATCGGCTCCCTCCAGTCCG
TGTCCAAGGAAAAGCTGGGCGAGAAAGTGCGCATCAATTACCTGAACGCC
CGACCCCGCTTCCCTTTCCTCCCCGGCCTCGGCACAGGGACTGGGGATGG
AAGCCGAATGTCGTGGTCGGCCCATCTGGCGGATGCAATCTTGGAAAGCG
CGGAGGAGCGGATAGAAGAACGCCTTTGGAGGAGCCGCGTGGGGCTCTGA
GGTCAAAGGCAGGCGGGGGACAACGGGTTTTCAACGGAGAGGATGTAGAC
TGCGGTCGCAGCGCTCTTAGGTAGATGTTCCTGGTGGGCACGAAAACGCA
AACAAGCTCGCAAAATTACAGCCTCGGCCTCGC
back to top

protein sequence of rna870

>rna870-protein ID=rna870-protein|Name=rna870|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MAAYFQVFRNSKIGIVLTLSLIFTTAMASPSAYFPEKLSLLLKTLSGSDR
LVNPHCIDNPFCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDL
VAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQAS
MFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGV
YWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPY
VICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHT
HYHYNFGQFFIFADWMFGTLRIPEPRAAKAVLSPGVVPSSGVRTTGKSGR
GKMD
back to top

mRNA from alignment at CM002456.1:608647..610467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna870 ID=rna870|Name=rna870|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp|location=Sequence derived from alignment at CM002456.1:608647..610467- (Nannochloropsis gaditana)
CCGTGGCCCCAAAACACGTCTCGTTTGGCTATTCTTCTTTCCATCTCCAC
GACCATCTGTACTCTACCACCCATGAGACTCATTCCTCCCGACACCCTCT
TGCATATGCGGGCGCACACCCGGAATCGCAGTTCGTCGACCTCGTCTTCA
AAATTTTCTCGCTCGTCGCCTGACGCGCTTCCGTTTCTTCTCACATGGCG
GCCTACTTTCAAGTCTTTCGGAACAGGTATTTACACTGCCACTCCCACAA
ATTTGATGTATGCTTGCTTCTTCGAATTGTTTCTACTCAGAGAGATGCAG
ATAATTGGAGAGCTTGCGCTCTCGGACAACTCTCGTTTTTTCTGCCCGTT
GGTGTCTCTCTTCAAGTATGTCTCGAGGAACCCTGTCACTGCATTCACCA
TTCCTTATGTACCATCCAGCAAAATAGGAATAGTGTTGACACTATCACTG
ATATTTACGACGGCCATGGCGTCTCCTTCGGCATATTTCCCTGAGAAGCT
GTCCCTCCTGTTGAAGACCCTCTCAGGGAGCGACCGGCTCGTCAACCCTC
ACTGCATCGACAATCCGTTCTGTGCATTCAACGACTGGGTCAATGCCTTT
CTGTTCAGGGACGCCGTGAAGGCTGACGTGATGGCACGGCTGGGGCCCGC
GGGGGCGCATTACTTCCTTACTTACGTGCGGGACCTGGTGGCGGGCTCCG
TGCTTTATTACCTGACTGCGGGGCTCTGGCATACCTACATCTACCAGTGG
CACGGAGACTACTTCTTCACGCAGCAAGGCTTTGAGAAACCCAGCGCAGC
GACTATCAAGGATCAGATCCAACTGGCGCAGGCGTCCATGTTCCTGTACG
CAGCCCTCCCCGTTCTGGCCGAGTGGCTGGTGGAGAGCGGGTGGACTCAG
TGCTATTACTACGTGGAGGAGATCGGGGGGTGGCCGTACTACCTGGCTTT
CACCCTTCTTTACCTGGCGATGGTGGAGGTGGGGGTGTACTGGATGCATC
GGACGCTGCACGAGAACAAGGTGCTCTACAAGTACATCCACGGCCTTCAT
CACAAGTACAACAAGCCCAGCACCCTCTCGCCCTGGGCTTCCGTGGCATT
CAACCCCATCGACGGGATTCTGCAAGCCTCTCCCTATGTGATCTGCCTCT
TCCTCGTCCCCTGCCACTACCTGACGCACGTGGCCATGGTTTTCTTCACG
GCCGTGTGGGCCACTAACATCCACGACGCTATGGACGGGAACACCGAGCC
GGTCATGGGCAGCAAATATCACACCGTGCACCACACGCACTACCACTACA
ACTTCGGACAGTTTTTCATATTTGCCGATTGGATGTTTGGCACCTTGCGG
ATTCCAGAGCCACGGGCGGCGAAAGCGGTTCTCAGCCCAGGGGTTGTCCC
GAGCTCGGGAGTGCGAACGACAGGGAAATCAGGGAGAGGCAAGATGGATT
GAGTCAAGACAAGAAGGGCACAGAAAGGCTGAAAGTCCCAGTAATTTTGA
AAGGAGGGGCGTGTCCGATGTGAGACTTGCTAGGAAGTGGAGGAGGTGAA
GCATGTATGTACGATAGACGTTTCTCGTCCGCGTTGAGACAACACGGGGA
GTTACAAATGAATATATCTTGGAAGGAAGTGCGCCGTGCGAGGCCGAGGC
TGTAATTTTGCGAGCTTGTTTGCGTTTTCGTGCCCACCAGGAACATCTAC
CTAAGAGCGCTGCGACCGCAGTCTACATCCTCTCCGTTGAAAACCCGTTG
TCCCCCGCCTGCCTTTGACCTCAGAGCCCCACGCGGCTCCTCCAAAGGCG
TTCTTCTATCCGCTCCTCCGC
back to top

Coding sequence (CDS) from alignment at CM002456.1:608647..610467-

>rna870 ID=rna870|Name=rna870|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002456.1:608647..610467- (Nannochloropsis gaditana)
CAAAATAGGAATAGTGTTGACACTATCACTGATATTTACGACGGCCATGG
CGTCTCCTTCGGCATATTTCCCTGAGAAGCTGTCCCTCCTGTTGAAGACC
CTCTCAGGGAGCGACCGGCTCGTCAACCCTCACTGCATCGACAATCCGTT
CTGTGCATTCAACGACTGGGTCAATGCCTTTCTGTTCAGGGACGCCGTGA
AGGCTGACGTGATGGCACGGCTGGGGCCCGCGGGGGCGCATTACTTCCTT
ACTTACGTGCGGGACCTGGTGGCGGGCTCCGTGCTTTATTACCTGACTGC
GGGGCTCTGGCATACCTACATCTACCAGTGGCACGGAGACTACTTCTTCA
CGCAGCAAGGCTTTGAGAAACCCAGCGCAGCGACTATCAAGGATCAGATC
CAACTGGCGCAGGCGTCCATGTTCCTGTACGCAGCCCTCCCCGTTCTGGC
CGAGTGGCTGGTGGAGAGCGGGTGGACTCAGTGCTATTACTACGTGGAGG
AGATCGGGGGGTGGCCGTACTACCTGGCTTTCACCCTTCTTTACCTGGCG
ATGGTGGAGGTGGGGGTGTACTGGATGCATCGGACGCTGCACGAGAACAA
GGTGCTCTACAAGTACATCCACGGCCTTCATCACAAGTACAACAAGCCCA
GCACCCTCTCGCCCTGGGCTTCCGTGGCATTCAACCCCATCGACGGGATT
CTGCAAGCCTCTCCCTATGTGATCTGCCTCTTCCTCGTCCCCTGCCACTA
CCTGACGCACGTGGCCATGGTTTTCTTCACGGCCGTGTGGGCCACTAACA
TCCACGACGCTATGGACGGGAACACCGAGCCGGTCATGGGCAGCAAATAT
CACACCGTGCACCACACGCACTACCACTACAACTTCGGACAGTTTTTCAT
ATTTGCCGATTGGATGTTTGGCACCTTGCGGATTCCAGAGCCACGGGCGG
CGAAAGCGGTTCTCAGCCCAGGGGTTGTCCCGAGCTCGGGAGTGCGAACG
ACAGGGAAATCAGGGAGAGGCAAGATGGATTGAATGGCGGCCTACTTTCA
AGTCTTTCGGAACAGCAAAATAGGAATAGTGTTGACACTATCACTGATAT
TTACGACGGCCATGGCGTCTCCTTCGGCATATTTCCCTGAGAAGCTGTCC
CTCCTGTTGAAGACCCTCTCAGGGAGCGACCGGCTCGTCAACCCTCACTG
CATCGACAATCCGTTCTGTGCATTCAACGACTGGGTCAATGCCTTTCTGT
TCAGGGACGCCGTGAAGGCTGACGTGATGGCACGGCTGGGGCCCGCGGGG
GCGCATTACTTCCTTACTTACGTGCGGGACCTGGTGGCGGGCTCCGTGCT
TTATTACCTGACTGCGGGGCTCTGGCATACCTACATCTACCAGTGGCACG
GAGACTACTTCTTCACGCAGCAAGGCTTTGAGAAACCCAGCGCAGCGACT
ATCAAGGATCAGATCCAACTGGCGCAGGCGTCCATGTTCCTGTACGCAGC
CCTCCCCGTTCTGGCCGAGTGGCTGGTGGAGAGCGGGTGGACTCAGTGCT
ATTACTACGTGGAGGAGATCGGGGGGTGGCCGTACTACCTGGCTTTCACC
CTTCTTTACCTGGCGATGGTGGAGGTGGGGGTGTACTGGATGCATCGGAC
GCTGCACGAGAACAAGGTGCTCTACAAGTACATCCACGGCCTTCATCACA
AGTACAACAAGCCCAGCACCCTCTCGCCCTGGGCTTCCGTGGCATTCAAC
CCCATCGACGGGATTCTGCAAGCCTCTCCCTATGTGATCTGCCTCTTCCT
CGTCCCCTGCCACTACCTGACGCACGTGGCCATGGTTTTCTTCACGGCCG
TGTGGGCCACTAACATCCACGACGCTATGGACGGGAACACCGAGCCGGTC
ATGGGCAGCAAATATCACACCGTGCACCACACGCACTACCACTACAACTT
CGGACAGTTTTTCATATTTGCCGATTGGATGTTTGGCACCTTGCGGATTC
CAGAGCCACGGGCGGCGAAAGCGGTTCTCAGCCCAGGGGTTGTCCCGAGC
TCGGGAGTGCGAACGACAGGGAAATCAGGGAGAGGCAAGATGGATTGAAT
GGCGGCCTACTTTCAAGTCTTTCGGAACAG
back to top
Synonyms
Publications