EWM29861.1, cds870 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|585112442|gb|EWM29861.1| (Fatty acid hydroxylase [Nannochloropsis gaditana]) HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0 Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query: 1 MAAYFQVFRNSKIGIVLTLSLIFTTAMASPSAYFPEKLSLLLKTLSGSDRLVNPHCIDNPFCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAKAVLSPGVVPSSGVRTTGKSGRGKMD 354
MAAYFQVFRNSKIGIVLTLSLIFTTAMASPSAYFPEKLSLLLKTLSGSDRLVNPHCIDNPFCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAKAVLSPGVVPSSGVRTTGKSGRGKMD
Sbjct: 1 MAAYFQVFRNSKIGIVLTLSLIFTTAMASPSAYFPEKLSLLLKTLSGSDRLVNPHCIDNPFCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAKAVLSPGVVPSSGVRTTGKSGRGKMD 354
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|298710542|emb|CBJ25606.1| (Sterol C-5 desaturase [Ectocarpus siliculosus]) HSP 1 Score: 314.309 bits (804), Expect = 3.277e-103 Identity = 155/261 (59.39%), Postives = 195/261 (74.71%), Query Frame = 0
Query: 64 FNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPE 324
FN W+N+FLF + +G AHYFLTYVR+ + GS+LYY+TA +WH IY G F + P+ A I DQIQLAQ S +YA LPVL E+ +E G+T+CY++ ++GG Y+ +T++YL VE+G+YWMHRTLH NK LYKY+H LHHKYN P TLSPWAS+AFNP+DG+LQA PYVICLF +PCHY TH+AM FTA+WATNIHDA+ GN+EP+MG+KYHTVHHTHYH NFGQFF F D +GTL+ P+
Sbjct: 15 FNAWINSFLFSEGTIKTARDAMGAKAAHYFLTYVRNFLGGSILYYITAAMWHWVIYVKMGRTLFPKG---MPAPAVIWDQIQLAQLSTTVYAMLPVLGEFFIEEGYTRCYFHFSDVGGLIGYVLYTVVYLTFVEIGIYWMHRTLHTNKFLYKYVHALHHKYNSPETLSPWASIAFNPLDGVLQACPYVICLFFIPCHYYTHMAMFMFTAIWATNIHDAVPGNSEPIMGAKYHTVHHTHYHVNFGQFFTFCDQYWGTLKRPQ 272
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|219123366|ref|XP_002181997.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406598|gb|EEC46537.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 300.056 bits (767), Expect = 4.266e-98 Identity = 147/241 (61.00%), Postives = 181/241 (75.10%), Query Frame = 0
Query: 91 HYFLTYVRDLVAGSVLYYLTAGLWHTYIY-QWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIP-EPRAAK 329
HY L Y+R+ + ++YY TAG++H + Y F Q +PSAATI QI+LAQ S+F+Y LPV+ E+LVE WT Y+ V+EIGGW YYL +T+LY A+VEVG+YWMHR LH NK LY+ +H +HH YNKP TL+PWAS+AF+P+DGILQASPYV LF+VPCHY TH ++FFTAVWAT IHDAMD N +P+MGSKYHTVHHTHY YN+GQ F F D +FGTLRIP EP K
Sbjct: 1 HYALCYMRNFIGAMLVYYGTAGVFHYFCYVHPTTSTAFAQNHRPRPSAATIWHQIKLAQLSLFVYVLLPVVDEFLVEQNWTWTYFTVQEIGGWAYYLLYTVLYFALVEVGIYWMHRKLHTNKWLYRNVHLMHHAYNKPETLTPWASIAFHPLDGILQASPYVAALFVVPCHYPTHFMLLFFTAVWATYIHDAMDFNIDPIMGSKYHTVHHTHYVYNYGQVFTFCDRIFGTLRIPTEPTGGK 241
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|1210521888|dbj|GAX19323.1| (Delta7-sterol 5-desaturase [Fistulifera solaris]) HSP 1 Score: 294.664 bits (753), Expect = 2.612e-94 Identity = 144/275 (52.36%), Postives = 194/275 (70.55%), Query Frame = 0
Query: 57 IDNPFCAFNDWVNAFLFRDAVKADVMARLGP------AGAHYFLTYVRDLVAGSVLYYLTAGLWH--TYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIP 323
+ P N ++N+ A A + L P +HY L Y+R+L+AG ++YY TA ++H YI+ + F ++ +PS ATI DQI +AQ SM +Y LPV+ E+L+E G+T Y+ V+EIGGW +Y + LLY+AMVE+G+YW+HRTLH NK LYK++H HHKYNK TL+PWAS+AF+P+DG+LQASPYV+ + PCHYLTH+ ++FFTAVWAT IHDAMD N +P+MGSKYHT+HHTHY YN+GQ F F D +GTLR+P
Sbjct: 89 LQQPCRNLNAYLNSIFLPTAFSARLTQELVPYVSNSLEWSHYLLCYLRNLIAGIIVYYGTASVFHYFCYIHPISEEIFAKRK---RPSLATILDQIVMAQTSMIIYVMLPVIDEFLIEKGFTASYFTVQEIGGWGWYAFYFLLYMAMVEIGIYWVHRTLHTNKWLYKHVHMPHHKYNKAETLTPWASIAFHPLDGMLQASPYVLAGLVCPCHYLTHLILLFFTAVWATYIHDAMDWNIDPIMGSKYHTMHHTHYIYNYGQIFTFCDAFWGTLRVP 360
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|1210516528|dbj|GAX24578.1| (Delta7-sterol 5-desaturase [Fistulifera solaris]) HSP 1 Score: 293.893 bits (751), Expect = 6.367e-94 Identity = 142/274 (51.82%), Postives = 193/274 (70.44%), Query Frame = 0
Query: 57 IDNPFCAFNDWVNAFLFRDAVKADVMARLGP------AGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIY-QWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIP 323
+ P N ++N+ A A + L P +HY L Y+R+L+AG ++YY TA ++H + Y + F ++ +PS ATI DQI +AQ SM +Y LPV+ E+L+E G+T Y+ V+EIGGW +Y + L+Y+ MVE+G+YW+HRTLH NK LYK++H HHKYNKP TL+PWAS+AF+P+DG+LQASPYV+ + PCHYLTH+ ++FFTAVWAT IHDAMD N +P+MGSKYHT+HHTHY YN+GQ F F D +GTLR+P
Sbjct: 88 LQQPCRNLNAYLNSIFLPTAFSARLTQELVPYVSDSLEWSHYLLCYLRNLIAGIIVYYGTASVFHYFCYIHPMSEEIFAKR--TRPSVATILDQIVMAQTSMIIYVMLPVIDEFLIEKGFTASYFTVQEIGGWGWYAFYFLVYMTMVEIGIYWVHRTLHTNKWLYKHVHMPHHKYNKPETLTPWASIAFHPLDGMLQASPYVLAGLVCPCHYLTHLILLFFTAVWATYIHDAMDWNIDPIMGSKYHTMHHTHYIYNYGQIFTFCDAFWGTLRVP 359
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|1072237659|gb|OEU22386.1| (putative sterol-C5(6)-desaturase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 284.648 bits (727), Expect = 3.027e-92 Identity = 137/235 (58.30%), Postives = 174/235 (74.04%), Query Frame = 0
Query: 90 AHYFLTYVRDLVAGSVLYYLTAGLWHTYIY-QWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIP 323
AHY L Y+R+ V V+YY TAG +H + Y F +Q +PS TIK QI+L+QASM +Y LPVL E+L+ESG+T+ Y+ V+EIGGW ++A L Y VE+ +YWMHRTLH NK LYK+IH +HH YNK TL+PWAS+AF+P+DG+LQASPYV L +PCHYLTH +M+FFTA+W T IHDAMD N P+MGSK+HTVHHTH+ YN+GQ F F DW +GTLR+P
Sbjct: 2 AHYVLCYLRNFVGAMVVYYGTAGTFHYFCYVHPMSRQTFEEQKRTRPSWETIKGQIKLSQASMTVYTMLPVLDEFLIESGYTKVYFTVQEIGGWRNHIATMLFYFCCVEICIYWMHRTLHTNKFLYKHIHLIHHLYNKAETLTPWASIAFHPLDGMLQASPYVCLLPFIPCHYLTHFSMLFFTAIWVTYIHDAMDWNFGPIMGSKFHTVHHTHFIYNYGQIFQFCDWFWGTLRVP 236
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|1026766428|gb|OAE26919.1| (hypothetical protein AXG93_4413s1010 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 257.684 bits (657), Expect = 2.042e-80 Identity = 118/269 (43.87%), Postives = 175/269 (65.06%), Query Frame = 0
Query: 61 FCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAK 329
F W+N+ + + + + A + H +++R+ +AG +Y+L+ GLW ++YQ DY+F + P+ IK QI ++ +M LY LP L+E+ +E GWT+CY +EE+G WP Y+ + +LY+A +E +YWMHR LH+ K LYK +H HH YNK +T+SP+A +AFNP DGILQA P+V LF++P H+ TH + F A+W TNIHD +DGN +MG+ YHT+HHT Y +N+G + +F DW+FGTLR PE R +
Sbjct: 60 FVKHTSWINSIVLYPFLPSSLRATI----PHNVQSWLRNYIAGIFIYFLSGGLWCLWVYQLRKDYYFPKGNI--PTKEPIKMQIVVSMKAMPLYTLLPSLSEYAIERGWTRCYSEIEEVG-WPNYIVYNILYMAFIEFFIYWMHRGLHDVKPLYKLLHATHHIYNKENTMSPFAGLAFNPFDGILQACPHVFALFVIPMHFFTHEFLFFCEAIWTTNIHDCIDGNVFAIMGAAYHTIHHTTYRHNYGHYTVFMDWLFGTLRDPEERKLQ 321
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|168035529|ref|XP_001770262.1| (predicted protein [Physcomitrella patens] >gi|162678479|gb|EDQ64937.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 254.988 bits (650), Expect = 1.171e-79 Identity = 117/240 (48.75%), Postives = 167/240 (69.58%), Query Frame = 0
Query: 91 HYFLTYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAKA 330
H T++R+ VAG +LY+++ GLW Y+Y W G++FF + P+ I QI + +M +Y LP L+E+++E GWT+C+ +E++G W Y+ + YLA+VE G+YWMHR LH+ K LYK++H HH YNK +TLSP+A +AF+PIDGILQA P+VI LFL+P H+ TH ++F VW TNIHD +DGN +MG+ +HT+HHT Y +N+G + +F DW+FGTLR P R A A
Sbjct: 65 HTLQTWLRNYVAGMLLYFVSGGLWCLYVYSWKGEHFFPAG--DIPAKEPIMLQIWVTMKAMPVYTGLPTLSEYMIERGWTKCFARIEDVG-WLTYVGLVIAYLAVVEFGIYWMHRELHDIKPLYKHLHATHHIYNKQNTLSPFAGLAFHPIDGILQACPHVIALFLLPMHFFTHEVLLFCEGVWTTNIHDCIDGNVWGIMGAGFHTIHHTTYRHNYGHYTVFMDWLFGTLRDPYERKATA 301
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|1147587627|ref|XP_020097644.1| (delta(7)-sterol-C5(6)-desaturase-like [Ananas comosus]) HSP 1 Score: 253.447 bits (646), Expect = 1.394e-79 Identity = 130/275 (47.27%), Postives = 175/275 (63.64%), Query Frame = 0
Query: 61 FCAFNDWVNAFLFRDAVKADVMARLGPAGAHYFL-----TYVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAKA 330
F DW N V+ L P GA L +++R+ + G+++Y+L+ LW YIY W + + PS + QI +A +M LY ALP L+E++VESGWT+C + EIG WP Y+A+ +YL VE G+YWMHR LH+ K LYKY+H HH YNK +TLSP+A +AF+P+DGILQA P+V+ LFLVP H+ TH+ ++F AVW NIHD +DG PVMG+ YHT+HHT Y +N+G + I+ DWMFGTLR PE KA
Sbjct: 10 FAEETDWYNDI---------VLGALLPGGARKRLPRPLQSWLRNYIGGTLVYFLSGFLWCFYIYYWKRNVHVPKDAI--PSNHAMYLQIIVAMKAMPLYCALPTLSEYMVESGWTRCISSISEIG-WPTYIAYLAIYLIFVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPLDGILQAVPHVVALFLVPVHFTTHIILLFCEAVWTANIHDCIDGKVWPVMGAGYHTIHHTTYRHNYGHYTIWMDWMFGTLRDPEEDVKKA 272
BLAST of EWM29861.1 vs. NCBI_GenBank
Match: gi|148910372|gb|ABR18264.1| (unknown [Picea sitchensis]) HSP 1 Score: 252.677 bits (644), Expect = 1.386e-78 Identity = 115/234 (49.15%), Postives = 163/234 (69.66%), Query Frame = 0
Query: 96 YVRDLVAGSVLYYLTAGLWHTYIYQWHGDYFFTQQGFEKPSAATIKDQIQLAQASMFLYAALPVLAEWLVESGWTQCYYYVEEIGGWPYYLAFTLLYLAMVEVGVYWMHRTLHENKVLYKYIHGLHHKYNKPSTLSPWASVAFNPIDGILQASPYVICLFLVPCHYLTHVAMVFFTAVWATNIHDAMDGNTEPVMGSKYHTVHHTHYHYNFGQFFIFADWMFGTLRIPEPRAAK 329
++R+ +AG ++Y+++ GLW YIY W D + PS I QI + +M LY+ALP L+E+++E+GWT+C+ + E+G WP Y+ ++LYL +VE G+YWMHR LH+ KVLYKY+H HH YNK +TLSP+A +AF+P+DGILQA P+V LF++P H+LTH ++F +W TNIHD + G PVMG+ YHT+HHT Y +N+G + I+ DWMFGTLR P A
Sbjct: 81 WLRNYIAGIIVYFVSGGLWSFYIYYWKRDVYIPAD--STPSKEPIFLQIMVTMKAMPLYSALPTLSEYMIENGWTKCFANINEVG-WPSYILLSILYLVLVEFGIYWMHRELHDIKVLYKYLHATHHIYNKQNTLSPFAGLAFHPLDGILQAIPHVAVLFIIPTHFLTHEMLLFCEGIWTTNIHDCIHGKVWPVMGAGYHTIHHTTYRHNYGHYTIWMDWMFGTLRDPIAEAKN 311 The following BLAST results are available for this feature:
BLAST of EWM29861.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|