rna8694, rna8694 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8694
Unique Name	rna8694
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1266
Alignment location	KK037249.1:608197..608981 +

Link to JBrowse

Properties


Property Name	Value
Product	v-type h-atpase
Orig transcript id	gnl\|cribi\|Naga_101667g1.6035.mrna
Orig protein id	gnl\|cribi\|Naga_101667g1.6035
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:608197..608981 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101667g1	gene8427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8694	rna8694-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22008.1	cds8665	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:608197..608981+
coding sequence from alignment at KK037249.1:608197..608981+

mRNA sequence

>rna8694 ID=rna8694|Name=rna8694|organism=Nannochloropsis gaditana|type=mRNA|length=1266bp
ATGGCTTTCAAGGCCGTCATCGTCTCTTCCTTCATAACAAGCCTTGCGCA
AGGACACATCTTCTCGAGCTGGGACAGCCGGACCGATACAAGCATCAAGG
AGGTCGTGGAGATTCCCCCCTCCGGCGGCAGCCGCCCTGTAGGAGCTTTT
GGGGTGGCAACAGGCGAATACCCTGCCACAACCCAAGTGGATTTTAAGGC
GGACGCAACCCTAGCGGGGGGTATGTATGTGAAAGGCTTCGCCCTCTCCC
AAGCCAAATATGCAGAGTTTCGAACTGCCTGCTCCCAAGAAGGCGACAAG
CTGGTTTCCGTTTACGAATGGGGTTATGGCGCCTGCGACAATTTCATGGG
TTCTTTGAAAGAGGCAATTGACCCGGCGACCACTTTCTTCGTGGGGCAAG
TGACGCCCAAACAGGACGGGACAGGCTCGACCGTCAAGGCCGCGTTCCAG
CTCCTGGATGGCGGCGAGGGCCTGTACGTGGTGTTCGAGAACTTGATGGG
CGGGCCCGTCACTTTCTCCAACGCCGAATTTTCGATCGCAGGCGTCGCAG
AGCCGGTCCAAGCCGGGGAAGATCTGGTTTTCCCCCCTGCCACTGTCCAC
ATGTCCGCCGCTGTCGTACCCTTGGCCGACGAGGTTCCCACCGAGAAAAC
CACCGTCACCTTTCGCGCCAAAAATACGGACGGGGGAAAGCAAACGGCGC
TGATGCTGGTGAACAAGGAGCAGATGGAGCCAGAGCGCCTTGGCTGCACC
TTCGGTTTCTATTTCGGGTGGTTCAAGAAGCATGCTCCCGGGCAGAACGT
CTGCAAGGGGGCCGATTTTACCTACACGATCGACGGCGACATCTTAACCT
TGAAAGGAGTCATCAAGGCCGTGACGCCAGAAACAGCTCCGCAGCTCCTA
GCGGGGGACATTCCCGTAGATCCCACCTCCACCCTCTTCCAGGGTGACGG
CGACTACGCCTTCGACGCAGAGGTACACGGGGCCGATAGCATGTTCGTCG
TCATTCCCAACCGCCGGGACACGCCCGTGACGGTCGAGGGCTTGACGGTG
AAATACCAGGCCGCGAACCTTGTCGGCCATTTGGCGAAGGAGTCCCAGAA
GATCCTGGATAACGGTCCCGCCACTGGCGTGGCGATTGCGGTCTTGGTGG
GCGTCTTGGCCCTGATGATGGCCGCGTATTGTGCGGGAAAACGGAGGGCA
AAGGCGACGGCGGAGAAGACGGCGGAGAAAGTGGAGGGGAAGCCGCAGGG
TAACGCACTTGTCTAG

protein sequence of rna8694

>rna8694-protein ID=rna8694-protein|Name=rna8694|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRR
YISYIKRCDELERKLRYMRTEIAKFGLDTEVNRERRGRKGGREGGREGEG
CSDKATMCEVEDIKRAFLPAHSWHCA

mRNA from alignment at KK037249.1:608197..608981+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8694 ID=rna8694|Name=rna8694|organism=Nannochloropsis gaditana|type=mRNA|length=785bp|location=Sequence derived from alignment at KK037249.1:608197..608981+ (Nannochloropsis gaditana)
GCTCACTAGAACCatctgctgctgttgccgtAGCGTAGGCAAGTGCTCAg
caggggtggaagagcgGCGGCAGTCTCTTGTTTGGGTTTCAGGTTCCAGT
CCGCGAGAAGAAAACGGTTGTGGAGATTCTTGCCCCGGCGCTCGGGACTC
CACCCTTGTTATCCTTGTGGCTTTCAGTGCAAACGGGATAAATCATGGCC
AAATGGTTTCGttcggaggaaatggagtaCGTCTCCTTGATTGTCAACGA
GGACGCTGCGCACGGAGCGGTCAATGACTTGGGTATGCTGGGAATAATTC
AATTTACTGATGTAAGGacctggggggggaaggaagggaggccttTTTTG
TCATCGGTCAAACGACGGAATGGATGTATGCAATGCCTTGCGGAGTGCAA
ATGAGTTTACATCCAAGCGGATgtgaaaggatggaggggattTGCGGGAT
GAGGGATCACTTACCACTTACGTCCCCCTCGCGCTGCTTTCTTCATGCCT
TTTTTTTGTCAAACTTTGCAGCTGAACCACGAGCAAACAGCCTTCCAGCG
TCGATACATCTCGTACATTAAACGTTGTGACGAATTGGAGCGCAAACTAC
GCTATATGCGCACCGAAATCGCAAAATTTGGCCTTGATACCGAGGTAAAC
Agggagcggagagggaggaagggagggagggagggagggagggaaggaga
ggggtgcAGCGACAAAGCAACGATGTGCGAAGTTGAAGATATTAAGAGAG
CATTTCTACCGGCACATAGCTGGCACTGCGCCTGA

Coding sequence (CDS) from alignment at KK037249.1:608197..608981+

>rna8694 ID=rna8694|Name=rna8694|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at KK037249.1:608197..608981+ (Nannochloropsis gaditana)
ATGGCCAAATGGTTTCGttcggaggaaatggagtaCGTCTCCTTGATTGT
CAACGAGGACGCTGCGCACGGAGCGGTCAATGACTTGGGTATGCTGGGAA
TAATTCAATTTACTGATCTGAACCACGAGCAAACAGCCTTCCAGCGTCGA
TACATCTCGTACATTAAACGTTGTGACGAATTGGAGCGCAAACTACGCTA
TATGCGCACCGAAATCGCAAAATTTGGCCTTGATACCGAGGTAAACAggg
agcggagagggaggaagggagggagggagggagggagggaaggagagggg
tgcAGCGACAAAGCAACGATGTGCGAAGTTGAAGATATTAAGAGAGCATT
TCTACCGGCACATAGCTGGCACTGCGCCTGAATGGCCAAATGGTTTCGtt
cggaggaaatggagtaCGTCTCCTTGATTGTCAACGAGGACGCTGCGCAC
GGAGCGGTCAATGACTTGGGTATGCTGGGAATAATTCAATTTACTGATCT
GAACCACGAGCAAACAGCCTTCCAGCGTCGATACATCTCGTACATTAAAC
GTTGTGACGAATTGGAGCGCAAACTACGCTATATGCGCACCGAAATCGCA
AAATTTGGCCTTGATACCGAGGTAAACAgggagcggagagggaggaaggg
agggagggagggagggagggaaggagaggggtgcAGCGACAAAGCAACGA
TGTGCGAAGTTGAAGATATTAAGAGAGCATTTCTACCGGCACATAGCTGG
CACTGCGCCTGA

Synonyms

Publications