EWM22008.1, cds8665 (CDS) Nannochloropsis gaditana

Overview
NameEWM22008.1
Unique Namecds8665
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:608391..608507 +
Alignment locationKK037249.1:608718..608981 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22008.1
Productv-type h-atpase
Orig transcript idgnl|cribi|Naga_101667g1.6035.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:608391..608507 +
KK037249.1supercontigKK037249.1:608718..608981 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015078proton transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
GO:0033179proton-transporting V-type ATPase, V0 domain
Vocabulary: INTERPRO
TermDefinition
IPR002490V-ATPase_116kDa_su
Homology
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|585102408|gb|EWM22008.1| (v-type h-atpase [Nannochloropsis gaditana])

HSP 1 Score: 262.692 bits (670), Expect = 5.391e-89
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDTEVNRERRGRKGGREGGREGEGCSDKATMCEVEDIKRAFLPAHSWHCA 126
            MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDTEVNRERRGRKGGREGGREGEGCSDKATMCEVEDIKRAFLPAHSWHCA
Sbjct:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDTEVNRERRGRKGGREGGREGEGCSDKATMCEVEDIKRAFLPAHSWHCA 126          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1072236372|gb|OEU21100.1| (putative vacuolar proton translocating ATPase A subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.109 bits (331), Expect = 3.073e-33
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDTE 80
            MAKWFRSE MEY+SLI+NEDAAH  + DLG LG+IQFTDLN + T FQRRY+SY+KRCDELERKLRY  TEI KF ++ E
Sbjct:    1 MAKWFRSEPMEYISLIMNEDAAHDCLGDLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFSTEIGKFNIECE 80          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|219122580|ref|XP_002181620.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406896|gb|EEC46834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.183 bits (326), Expect = 1.598e-32
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLD 78
            MA+WFRSE MEY+SLIVNEDAAH  + DLG LG+IQFTDLN + T FQRRY+SY+KRCDELERKLRY   EI KF +D
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLADLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFSNEIEKFEID 78          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|397603782|gb|EJK58518.1| (hypothetical protein THAOC_21344 [Thalassiosira oceanica])

HSP 1 Score: 119.783 bits (299), Expect = 1.113e-31
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDTEV 81
            MA+WFRSE MEY+SLIVNEDAAH  + DLG L  IQFTDLN + T FQRRY+SY++RCDELERKLR+  +E   FGL+ E 
Sbjct:    1 MARWFRSEHMEYISLIVNEDAAHDCLADLGKLSAIQFTDLNPDLTPFQRRYVSYVRRCDELERKLRFFGSECDNFGLNLET 81          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1072222991|gb|OEU07749.1| (putative vacuolar proton translocating ATPase A subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.102 bits (318), Expect = 1.577e-31
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLDT 79
            MAKWFRSE MEY+SLI+NEDAAH  + DLG +G+IQFTDLN + T FQRRY++Y+KRCDELERKLR+   EI KF L+T
Sbjct:    1 MAKWFRSEPMEYISLIMNEDAAHDCLADLGKMGVIQFTDLNPDLTPFQRRYVTYVKRCDELERKLRFFNIEIDKFKLET 79          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1210521206|dbj|GAX19954.1| (V-type H+-transporting ATPase subunit a [Fistulifera solaris])

HSP 1 Score: 125.946 bits (315), Expect = 4.236e-31
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLD 78
            MA+WFRSE MEY+SLIVNEDAAH  + DLG LG+IQFTDLN + T FQRRY+SY+KRCDELERKLR+   EI KF L+
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLADLGNLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFVGEIEKFELE 78          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1210512366|dbj|GAX28635.1| (V-type H+-transporting ATPase subunit a [Fistulifera solaris])

HSP 1 Score: 125.946 bits (315), Expect = 4.236e-31
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLD 78
            MA+WFRSE MEY+SLIVNEDAAH  + DLG LG+IQFTDLN + T FQRRY+SY+KRCDELERKLR+   EI KF L+
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLADLGNLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFVGEIEKFELE 78          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1072236398|gb|OEU21126.1| (putative vacuolar proton translocating ATPase A subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 125.946 bits (315), Expect = 4.440e-31
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLD 78
            MAKWFRSE MEY+S+I+NEDA+H  + DLG LG++QFTDLN + T FQRRY+SY+KRCDELERK+RY  +EI KF L+
Sbjct:    1 MAKWFRSEPMEYISIIINEDASHDCLADLGKLGVMQFTDLNPDLTPFQRRYVSYVKRCDELERKIRYFSSEIDKFDLE 78          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1214674530|gb|OWY96751.1| (Vacuolar proton translocating ATPase A subunit [Phytophthora megakarya])

HSP 1 Score: 117.087 bits (292), Expect = 5.151e-31
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0
Query:    3 KWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGL 77
            KW RS EMEY+SLIVNEDAAH  V  LG LG+++FTDLN E T FQRRY++Y+KRCDE+ERKLRY   E+AKF +
Sbjct:    2 KWLRSAEMEYISLIVNEDAAHDCVQKLGDLGVLEFTDLNPELTPFQRRYVNYVKRCDEMERKLRYFEVELAKFSI 76          
BLAST of EWM22008.1 vs. NCBI_GenBank
Match: gi|1210521223|dbj|GAX19971.1| (V-type H+-transporting ATPase subunit a [Fistulifera solaris])

HSP 1 Score: 124.405 bits (311), Expect = 1.495e-30
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEIAKFGLD 78
            MA+WFRSE MEY+SLIVNEDAAH  + DLG +G+IQFTDLN + T FQRRY+SY+KRCDELERKLR+  +E  KF L+
Sbjct:    1 MARWFRSEPMEYISLIVNEDAAHDCLADLGRMGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFVSETDKFELE 78          
The following BLAST results are available for this feature:
BLAST of EWM22008.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102408|gb|EWM22008.1|5.391e-89100.00v-type h-atpase [Nannochloropsis gaditana][more]
gi|1072236372|gb|OEU21100.1|3.073e-3372.50putative vacuolar proton translocating ATPase A su... [more]
gi|219122580|ref|XP_002181620.1|1.598e-3273.08predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397603782|gb|EJK58518.1|1.113e-3166.67hypothetical protein THAOC_21344 [Thalassiosira oc... [more]
gi|1072222991|gb|OEU07749.1|1.577e-3169.62putative vacuolar proton translocating ATPase A su... [more]
gi|1210521206|dbj|GAX19954.1|4.236e-3171.79V-type H+-transporting ATPase subunit a [Fistulife... [more]
gi|1210512366|dbj|GAX28635.1|4.236e-3171.79V-type H+-transporting ATPase subunit a [Fistulife... [more]
gi|1072236398|gb|OEU21126.1|4.440e-3167.95putative vacuolar proton translocating ATPase A su... [more]
gi|1214674530|gb|OWY96751.1|5.151e-3168.00Vacuolar proton translocating ATPase A subunit [Ph... [more]
gi|1210521223|dbj|GAX19971.1|1.495e-3069.23V-type H+-transporting ATPase subunit a [Fistulife... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8694rna8694Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications