|
|
Properties
| Property Name | Value |
|---|
| Product | beta-ig-h3 fasciclin |
| Orig transcript id | gnl|cribi|Naga_100742g1.9997.mrna |
| Orig protein id | gnl|cribi|Naga_100742g1.9997 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:600854..602884 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8692 ID=rna8692|Name=rna8692|organism=Nannochloropsis gaditana|type=mRNA|length=727bp
CAGATAAAGACGCTCGGAAAGGTTTGTAGGATGGATTTTGTCGAAAGTGT
TTGCAAGGATTGTTGGTGGGTTAAAGCACACCTTGTCAGCAAAAGGTCAG
GAAGAAGGAGAGGGACTCGAGCATGGGGGGACAGAACAAACAAAAGCAAC
TTTCACCATCTCGCTGAAGCATGAGTTGCAACTGACAGTCAGGACCATAT
ACCTTAGCCCTCCGCGAGCTTAAATCTTGTCGATGCTGCAACAGCGTTTG
CAAGTAAGTACGAATATACTTCGAGTACGGTGGAATGCCCTCCTCCAGCT
GATGAACGACGTTCCCGTGAAAGACGACACGTTGTTCGTGCACCACGCCA
GGCGCGCAATGCGCGGGCCGCACCCTGTTGGCTTTAAAAGCCAGGAGGGA
CGGGGATTAGACTCAGCCGCCGGCAGTCGTGGCCGAGGTCGTGCTCATTT
TTATCGCAGACAAACAACCCCGGCATATGCCCGACGCAAGTCATGGCACC
CCAATGCTTTCTGGAGACACCTCCGGCCCCCTGTCTCCTATCCCTTCTCC
ACCTCCACTCCGCGCTCCCATTCCTCACCTCATGCATGGCCTCGCCCCTC
CCCCCTCGCCCCCGCCGAGATCGCGCGTCTGGAGGCCATCGGCGCGCAAG
GAGGGGACTCAGAGGGATGGAAAGCCTGGAAAGAGCTGGGAATGCGGTAT
TGGAGCTGTGCGTATGGATCCAGATGA back to topprotein sequence of rna8692 >rna8692-protein ID=rna8692-protein|Name=rna8692|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MHFDTQESRAQFGFLGRRLIKESIAMVRARCRNPSPCRFHPTCLFKWPSI
ICLSYILRAFYVVTAFVPPFPPAETPRNLFCPSAASLPPPPPETDLLSTL
AQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVA
AREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVY
GGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALPSDFDPFAAPEAASPG
PVLGVTAPLGCWDPLGLWTGKDAATQARLRDAEIKHARLAMLAAIGILTQ
ELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAW
EVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAEREEEREKIDAGNR
ELNNGRLAMIAVVGMLVQEIVTGRSVLSPWIEFLSCGDSGRSRGGMTTSS
PFPSCAPKQKCLLFVSSWNPCGHRLVFGSIKSS back to topmRNA from alignment at KK037249.1:600854..602884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8692 ID=rna8692|Name=rna8692|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp|location=Sequence derived from alignment at KK037249.1:600854..602884- (Nannochloropsis gaditana)
ATGCATTTCGACACGCAGGAATCGAGGGCACAATTTGGTTTTCTAGGCCG
CCGGCTCATCAAGGAGTCCATCGCTATGGTCCGAGCCCGGTGTCGGAACC
CTTCCCCCTGTCGATTTCACCCCACTTGCCTCTTTAAGTGGCCGTCCATT
ATCTGCCTTTCCTACATCCTCCGAGCATTTTACGTTGTTACGGCCTTTGT
CCCGCCATTTCCACCGGCGGAGACCCCCAGGAACCTTTTTTGTCCCTCCG
CTGCATCCCTTCCACCTCCGCCGCCCGAGACCGACCTCCTCTCTACTCTG
GCCCAAGACGGACGCTTCACACGCCTCCTCCACCTTTTCAAAGAGGTAGG
GCTCGACGCCACCCTGAGTGGCCCTGGGCCGTGGACTGTGCTTGCGCCCA
CGGACGCGGCTCTGGACGACCAGGTAGCCAACCTCACCCTCATCGTGGCT
GCACGGGAGCCAAAGCGGCACCTGACACCCTTGCTGTCCTACCACATCAT
CCCAGGTGAGTGCTCTATACACGGCAAGGGCGTGTCCCCATCTGAGGCAC
GCGGGCACGGCGATGAGTTTATTGCCGGGGAGCGGAGAGAGGGAGGGGAG
GAAGTGGAGGGGCCACTTGCCGCGCGCATGCCACCACTTGCACGCGTCTT
GCAGCCGTCCATGCGGCTGCACAATGGCCCGCTGAGAAACGAGCTCGCTC
ACCTGCTCTTTCTGGTTTGTAATCCCGTAGGGAAAGCCATGGGCCTGGGA
GACCTGGTGGCCGCCGGTGACGCGAGGACTCGGGTCAAGGTAGGGGAGAA
CAGGGAGGTAAAGAAGGACAAGCGAAGGGGAAAAGGAGAGAGGAAGGTAT
GGGGGCCACGCATGTCCCAGGGTGCGGCGGAAGAGAGGGGCCGGAGGGAA
GAAAGACGTGGGCAGTGCCCTCCTCTAGGTCCGGAGGAGGAGCCGGGGCC
CGAGAAGGGAGTGTGAGGGCCCTGTTCCTGGGTAAATGCTTCCGTTTTGA
CCCGATGTCCCTCTCTATACCCCCACGCCATGTCGATTCATTTCCTGTGG
GCAGACGTTGGAGCGCAGCGGTTTGTCGATCGCTGTCTATGGGGGCACGG
TCCTGGTGGACGAAGGCCGTATCCTGGAGTGGGGCATGGAAGCAGGCAAC
GGAGTCGTGCATGTGATGGACAGCCTCCTTCTCCCTGCCCTCCCGTCCGA
CTTCGATCCTTTCGCCGCCCCGGAGGCCGCCTCCCCGGGCCCCGTCCTGG
GGGTGACCGCTCCCCTCGGCTGCTGGGATCCTCTGGGCTTGTGGACGGGA
AAGGACGCCGCAACGCAAGCCCGTTTGCGTGATGCGGAAATCAAGCACGC
GCGCTTGGCCATGCTGGCTGCAATAGGGATCCTCACGCAGGAGCTGGTGG
TACCCACTCATCCGTACGCGTTCCAGCCTGTATTGGATGCATTGCGTGAC
AGCACACACATGGCTCCCGACGTTTCATTTCTACTACCTTTGCCTCCGAT
TGCGGCGTTGGCAGCGATCCTTGCTCCCGGAGTCGCGTGGGAAGTGTGGT
CACTGCGAAGAGCCTCGAAGGACAAGGCGCCGGGCAGGCCATCCAAGGAG
GAGGCACTCACCCAGATACTGAAACGAGAATCCCCCGACTTTGAGGCAGA
GAGGGAGGAAGAGCGTGAAAAAATCGATGCGGGGAATAGAGAATTGAACA
ACGGTAGACTGGCTATGATAGCTGTCGTTGGAATGCTAGTGCAGGAAATC
GTCACGGGTCGAAGCGTTCTGAGTCCTTGGATGTGAGATGTCGGAAAGCA
AAGCCGCAGGATCAAAGGTGTAAAATTATAAGTGCCATCAATGCACTTAC
TGTCTAATCCCTGTCTTCCAGCGAATTCCTTTCTTGTGGTGATAGCGGAC
GTTCCCGGGGGGGTATGACAACCTCCTCTCCCTTCCCGTCGTGCGCTCCA
AAGCAGAAATGCCTGCTTTTCGTGAGCTCTTGGAATCCGTGTGGCCATAG
ACTCGTATTTGGGAGCATTAAATCATCATGA back to topCoding sequence (CDS) from alignment at KK037249.1:600854..602884- >rna8692 ID=rna8692|Name=rna8692|organism=Nannochloropsis gaditana|type=CDS|length=5808bp|location=Sequence derived from alignment at KK037249.1:600854..602884- (Nannochloropsis gaditana)
CGAATTCCTTTCTTGTGGTGATAGCGGACGTTCCCGGGGGGGTATGACAA
CCTCCTCTCCCTTCCCGTCGTGCGCTCCAAAGCAGAAATGCCTGCTTTTC
GTGAGCTCTTGGAATCCGTGTGGCCATAGACTCGTATTTGGGAGCATTAA
ATCATCATGAACGTTGGAGCGCAGCGGTTTGTCGATCGCTGTCTATGGGG
GCACGGTCCTGGTGGACGAAGGCCGTATCCTGGAGTGGGGCATGGAAGCA
GGCAACGGAGTCGTGCATGTGATGGACAGCCTCCTTCTCCCTGCCCTCCC
GTCCGACTTCGATCCTTTCGCCGCCCCGGAGGCCGCCTCCCCGGGCCCCG
TCCTGGGGGTGACCGCTCCCCTCGGCTGCTGGGATCCTCTGGGCTTGTGG
ACGGGAAAGGACGCCGCAACGCAAGCCCGTTTGCGTGATGCGGAAATCAA
GCACGCGCGCTTGGCCATGCTGGCTGCAATAGGGATCCTCACGCAGGAGC
TGGTGGTACCCACTCATCCGTACGCGTTCCAGCCTGTATTGGATGCATTG
CGTGACAGCACACACATGGCTCCCGACGTTTCATTTCTACTACCTTTGCC
TCCGATTGCGGCGTTGGCAGCGATCCTTGCTCCCGGAGTCGCGTGGGAAG
TGTGGTCACTGCGAAGAGCCTCGAAGGACAAGGCGCCGGGCAGGCCATCC
AAGGAGGAGGCACTCACCCAGATACTGAAACGAGAATCCCCCGACTTTGA
GGCAGAGAGGGAGGAAGAGCGTGAAAAAATCGATGCGGGGAATAGAGAAT
TGAACAACGGTAGACTGGCTATGATAGCTGTCGTTGGAATGCTAGTGCAG
GAAATCGTCACGGGTCGAAGCGTTCTGAGTCCTTGGATGGAAAGCCATGG
GCCTGGGAGACCTGGTGGCCGCCGGTGACGCGAGGACTCGGGTCAAGATG
CATTTCGACACGCAGGAATCGAGGGCACAATTTGGTTTTCTAGGCCGCCG
GCTCATCAAGGAGTCCATCGCTATGGTCCGAGCCCGGTGTCGGAACCCTT
CCCCCTGTCGATTTCACCCCACTTGCCTCTTTAAGTGGCCGTCCATTATC
TGCCTTTCCTACATCCTCCGAGCATTTTACGTTGTTACGGCCTTTGTCCC
GCCATTTCCACCGGCGGAGACCCCCAGGAACCTTTTTTGTCCCTCCGCTG
CATCCCTTCCACCTCCGCCGCCCGAGACCGACCTCCTCTCTACTCTGGCC
CAAGACGGACGCTTCACACGCCTCCTCCACCTTTTCAAAGAGGTAGGGCT
CGACGCCACCCTGAGTGGCCCTGGGCCGTGGACTGTGCTTGCGCCCACGG
ACGCGGCTCTGGACGACCAGGTAGCCAACCTCACCCTCATCGTGGCTGCA
CGGGAGCCAAAGCGGCACCTGACACCCTTGCTGTCCTACCACATCATCCC
AGCGAATTCCTTTCTTGTGGTGATAGCGGACGTTCCCGGGGGGGTATGAC
AACCTCCTCTCCCTTCCCGTCGTGCGCTCCAAAGCAGAAATGCCTGCTTT
TCGTGAGCTCTTGGAATCCGTGTGGCCATAGACTCGTATTTGGGAGCATT
AAATCATCATGAACGTTGGAGCGCAGCGGTTTGTCGATCGCTGTCTATGG
GGGCACGGTCCTGGTGGACGAAGGCCGTATCCTGGAGTGGGGCATGGAAG
CAGGCAACGGAGTCGTGCATGTGATGGACAGCCTCCTTCTCCCTGCCCTC
CCGTCCGACTTCGATCCTTTCGCCGCCCCGGAGGCCGCCTCCCCGGGCCC
CGTCCTGGGGGTGACCGCTCCCCTCGGCTGCTGGGATCCTCTGGGCTTGT
GGACGGGAAAGGACGCCGCAACGCAAGCCCGTTTGCGTGATGCGGAAATC
AAGCACGCGCGCTTGGCCATGCTGGCTGCAATAGGGATCCTCACGCAGGA
GCTGGTGGTACCCACTCATCCGTACGCGTTCCAGCCTGTATTGGATGCAT
TGCGTGACAGCACACACATGGCTCCCGACGTTTCATTTCTACTACCTTTG
CCTCCGATTGCGGCGTTGGCAGCGATCCTTGCTCCCGGAGTCGCGTGGGA
AGTGTGGTCACTGCGAAGAGCCTCGAAGGACAAGGCGCCGGGCAGGCCAT
CCAAGGAGGAGGCACTCACCCAGATACTGAAACGAGAATCCCCCGACTTT
GAGGCAGAGAGGGAGGAAGAGCGTGAAAAAATCGATGCGGGGAATAGAGA
ATTGAACAACGGTAGACTGGCTATGATAGCTGTCGTTGGAATGCTAGTGC
AGGAAATCGTCACGGGTCGAAGCGTTCTGAGTCCTTGGATGGAAAGCCAT
GGGCCTGGGAGACCTGGTGGCCGCCGGTGACGCGAGGACTCGGGTCAAGA
TGCATTTCGACACGCAGGAATCGAGGGCACAATTTGGTTTTCTAGGCCGC
CGGCTCATCAAGGAGTCCATCGCTATGGTCCGAGCCCGGTGTCGGAACCC
TTCCCCCTGTCGATTTCACCCCACTTGCCTCTTTAAGTGGCCGTCCATTA
TCTGCCTTTCCTACATCCTCCGAGCATTTTACGTTGTTACGGCCTTTGTC
CCGCCATTTCCACCGGCGGAGACCCCCAGGAACCTTTTTTGTCCCTCCGC
TGCATCCCTTCCACCTCCGCCGCCCGAGACCGACCTCCTCTCTACTCTGG
CCCAAGACGGACGCTTCACACGCCTCCTCCACCTTTTCAAAGAGGTAGGG
CTCGACGCCACCCTGAGTGGCCCTGGGCCGTGGACTGTGCTTGCGCCCAC
GGACGCGGCTCTGGACGACCAGGTAGCCAACCTCACCCTCATCGTGGCTG
CACGGGAGCCAAAGCGGCACCTGACACCCTTGCTGTCCTACCACATCATC
CCAGCGAATTCCTTTCTTGTGGTGATAGCGGACGTTCCCGGGGGGGTATG
ACAACCTCCTCTCCCTTCCCGTCGTGCGCTCCAAAGCAGAAATGCCTGCT
TTTCGTGAGCTCTTGGAATCCGTGTGGCCATAGACTCGTATTTGGGAGCA
TTAAATCATCATGAACGTTGGAGCGCAGCGGTTTGTCGATCGCTGTCTAT
GGGGGCACGGTCCTGGTGGACGAAGGCCGTATCCTGGAGTGGGGCATGGA
AGCAGGCAACGGAGTCGTGCATGTGATGGACAGCCTCCTTCTCCCTGCCC
TCCCGTCCGACTTCGATCCTTTCGCCGCCCCGGAGGCCGCCTCCCCGGGC
CCCGTCCTGGGGGTGACCGCTCCCCTCGGCTGCTGGGATCCTCTGGGCTT
GTGGACGGGAAAGGACGCCGCAACGCAAGCCCGTTTGCGTGATGCGGAAA
TCAAGCACGCGCGCTTGGCCATGCTGGCTGCAATAGGGATCCTCACGCAG
GAGCTGGTGGTACCCACTCATCCGTACGCGTTCCAGCCTGTATTGGATGC
ATTGCGTGACAGCACACACATGGCTCCCGACGTTTCATTTCTACTACCTT
TGCCTCCGATTGCGGCGTTGGCAGCGATCCTTGCTCCCGGAGTCGCGTGG
GAAGTGTGGTCACTGCGAAGAGCCTCGAAGGACAAGGCGCCGGGCAGGCC
ATCCAAGGAGGAGGCACTCACCCAGATACTGAAACGAGAATCCCCCGACT
TTGAGGCAGAGAGGGAGGAAGAGCGTGAAAAAATCGATGCGGGGAATAGA
GAATTGAACAACGGTAGACTGGCTATGATAGCTGTCGTTGGAATGCTAGT
GCAGGAAATCGTCACGGGTCGAAGCGTTCTGAGTCCTTGGATGGAAAGCC
ATGGGCCTGGGAGACCTGGTGGCCGCCGGTGACGCGAGGACTCGGGTCAA
GATGCATTTCGACACGCAGGAATCGAGGGCACAATTTGGTTTTCTAGGCC
GCCGGCTCATCAAGGAGTCCATCGCTATGGTCCGAGCCCGGTGTCGGAAC
CCTTCCCCCTGTCGATTTCACCCCACTTGCCTCTTTAAGTGGCCGTCCAT
TATCTGCCTTTCCTACATCCTCCGAGCATTTTACGTTGTTACGGCCTTTG
TCCCGCCATTTCCACCGGCGGAGACCCCCAGGAACCTTTTTTGTCCCTCC
GCTGCATCCCTTCCACCTCCGCCGCCCGAGACCGACCTCCTCTCTACTCT
GGCCCAAGACGGACGCTTCACACGCCTCCTCCACCTTTTCAAAGAGGTAG
GGCTCGACGCCACCCTGAGTGGCCCTGGGCCGTGGACTGTGCTTGCGCCC
ACGGACGCGGCTCTGGACGACCAGGTAGCCAACCTCACCCTCATCGTGGC
TGCACGGGAGCCAAAGCGGCACCTGACACCCTTGCTGTCCTACCACATCA
TCCCAGCGAATTCCTTTCTTGTGGTGATAGCGGACGTTCCCGGGGGGGTA
TGACAACCTCCTCTCCCTTCCCGTCGTGCGCTCCAAAGCAGAAATGCCTG
CTTTTCGTGAGCTCTTGGAATCCGTGTGGCCATAGACTCGTATTTGGGAG
CATTAAATCATCATGAACGTTGGAGCGCAGCGGTTTGTCGATCGCTGTCT
ATGGGGGCACGGTCCTGGTGGACGAAGGCCGTATCCTGGAGTGGGGCATG
GAAGCAGGCAACGGAGTCGTGCATGTGATGGACAGCCTCCTTCTCCCTGC
CCTCCCGTCCGACTTCGATCCTTTCGCCGCCCCGGAGGCCGCCTCCCCGG
GCCCCGTCCTGGGGGTGACCGCTCCCCTCGGCTGCTGGGATCCTCTGGGC
TTGTGGACGGGAAAGGACGCCGCAACGCAAGCCCGTTTGCGTGATGCGGA
AATCAAGCACGCGCGCTTGGCCATGCTGGCTGCAATAGGGATCCTCACGC
AGGAGCTGGTGGTACCCACTCATCCGTACGCGTTCCAGCCTGTATTGGAT
GCATTGCGTGACAGCACACACATGGCTCCCGACGTTTCATTTCTACTACC
TTTGCCTCCGATTGCGGCGTTGGCAGCGATCCTTGCTCCCGGAGTCGCGT
GGGAAGTGTGGTCACTGCGAAGAGCCTCGAAGGACAAGGCGCCGGGCAGG
CCATCCAAGGAGGAGGCACTCACCCAGATACTGAAACGAGAATCCCCCGA
CTTTGAGGCAGAGAGGGAGGAAGAGCGTGAAAAAATCGATGCGGGGAATA
GAGAATTGAACAACGGTAGACTGGCTATGATAGCTGTCGTTGGAATGCTA
GTGCAGGAAATCGTCACGGGTCGAAGCGTTCTGAGTCCTTGGATGGAAAG
CCATGGGCCTGGGAGACCTGGTGGCCGCCGGTGACGCGAGGACTCGGGTC
AAGATGCATTTCGACACGCAGGAATCGAGGGCACAATTTGGTTTTCTAGG
CCGCCGGCTCATCAAGGAGTCCATCGCTATGGTCCGAGCCCGGTGTCGGA
ACCCTTCCCCCTGTCGATTTCACCCCACTTGCCTCTTTAAGTGGCCGTCC
ATTATCTGCCTTTCCTACATCCTCCGAGCATTTTACGTTGTTACGGCCTT
TGTCCCGCCATTTCCACCGGCGGAGACCCCCAGGAACCTTTTTTGTCCCT
CCGCTGCATCCCTTCCACCTCCGCCGCCCGAGACCGACCTCCTCTCTACT
CTGGCCCAAGACGGACGCTTCACACGCCTCCTCCACCTTTTCAAAGAGGT
AGGGCTCGACGCCACCCTGAGTGGCCCTGGGCCGTGGACTGTGCTTGCGC
CCACGGACGCGGCTCTGGACGACCAGGTAGCCAACCTCACCCTCATCGTG
GCTGCACGGGAGCCAAAGCGGCACCTGACACCCTTGCTGTCCTACCACAT
CATCCCAG back to top
|