EWM22009.1, cds8663 (CDS) Nannochloropsis gaditana

Overview
NameEWM22009.1
Unique Namecds8663
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:602380..602884 -
Alignment locationKK037249.1:602096..602154 -
Alignment locationKK037249.1:601103..601830 -
Alignment locationKK037249.1:600854..601013 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22009.1
Productbeta-ig-h3 fasciclin
Orig transcript idgnl|cribi|Naga_100742g1.9997.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:602380..602884 -
KK037249.1supercontigKK037249.1:602096..602154 -
KK037249.1supercontigKK037249.1:601103..601830 -
KK037249.1supercontigKK037249.1:600854..601013 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom
IPR000782FAS1_domain
Homology
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|585102410|gb|EWM22009.1| (beta-ig-h3 fasciclin [Nannochloropsis gaditana])

HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0
Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0
Query:    1 MHFDTQESRAQFGFLGRRLIKESIAMVRARCRNPSPCRFHPTCLFKWPSIICLSYILRAFYVVTAFVPPFPPAETPRNLFCPSAASLPPPPPETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALPSDFDPFAAPEAASPGPVLGVTAPLGCWDPLGLWTGKDAATQARLRDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAWEVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAEREEEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSVLSPWIEFLSCGDSGRSRGGMTTSSPFPSCAPKQKCLLFVSSWNPCGHRLVFGSIKSS 483
            MHFDTQESRAQFGFLGRRLIKESIAMVRARCRNPSPCRFHPTCLFKWPSIICLSYILRAFYVVTAFVPPFPPAETPRNLFCPSAASLPPPPPETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALPSDFDPFAAPEAASPGPVLGVTAPLGCWDPLGLWTGKDAATQARLRDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAWEVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAEREEEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSVLSPWIEFLSCGDSGRSRGGMTTSSPFPSCAPKQKCLLFVSSWNPCGHRLVFGSIKSS
Sbjct:    1 MHFDTQESRAQFGFLGRRLIKESIAMVRARCRNPSPCRFHPTCLFKWPSIICLSYILRAFYVVTAFVPPFPPAETPRNLFCPSAASLPPPPPETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALPSDFDPFAAPEAASPGPVLGVTAPLGCWDPLGLWTGKDAATQARLRDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAWEVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAEREEEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSVLSPWIEFLSCGDSGRSRGGMTTSSPFPSCAPKQKCLLFVSSWNPCGHRLVFGSIKSS 483          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|780355039|ref|WP_045568893.1| (fasciclin [Vibrio sp. S234-5] >gi|778245941|gb|KJR39617.1| fasciclin [Vibrio sp. S234-5])

HSP 1 Score: 96.2857 bits (238), Expect = 1.054e-19
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   93 ETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            +TD++     +G FT L+   K  GL  TL G GP+TV APTD A          ++   E K  L  +L+YH++PGK M   D++  G A     T++   + I VYGG V+VD   ++   ++A NGV+HV+D++++P
Sbjct:   31 KTDIVDVAVANGSFTTLVAAVKAAGLVETLKGDGPFTVFAPTDEAFAKLPEGTVEMLLKPENKDKLVAILTYHVVPGKVMA-ADVIKLGKAT----TVQGQDVMIKVYGGKVMVDNANVVATDVKASNGVIHVIDTVIMP 165          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|1015843707|ref|WP_062840036.1| (hypothetical protein [Achromobacter xylosoxidans] >gi|1000175575|gb|KXJ65476.1| hypothetical protein AXY46_15660 [Achromobacter xylosoxidans] >gi|1137447753|gb|OMP45364.1| hypothetical protein BMR85_12405 [Achromobacter sp. KAs 3-5])

HSP 1 Score: 94.7449 bits (234), Expect = 1.910e-19
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDART-RVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL  TL GPGP+TV APTD A      +   + A  + K  LT +L+YH++PGK M       A D +  +VKT+E S L+IAV GG V VD  ++++  + A NGV+HV+D++L+P
Sbjct:   21 DIVDTAKSAGSFNTLVTAVQAAGLVDTLKGPGPYTVFAPTDEAFAKVPKDK--LDALLKDKAALTKVLTYHVVPGKVM-------AKDVKPGKVKTVEGSSLTIAVNGGNVTVDNAKVVKTDVAADNGVIHVIDTVLMP 150          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|655226110|ref|WP_028640098.1| (hypothetical protein [Novosphingobium acidiphilum])

HSP 1 Score: 95.1301 bits (235), Expect = 2.346e-19
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 0
Query:   93 ETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALP 235
            E D++ T    G+F  L       GL ATL GPGP+TV APTDAA           +   E K  LT +L+YH++PG  M   D+V   +A    KT+  + + I V  GTV++D  +++   + A NGV+HV+D++L+P  P
Sbjct:   29 EKDIVDTAVAAGQFKTLTAALDAAGLVATLKGPGPFTVFAPTDAAFAKLPEGTVTTLLKPENKAALTAILTYHVVPGTVMA-ADVVKMSEA----KTVNGAMVRITVNNGTVMIDNAKVVMTDIVATNGVIHVIDTVLMPPQP 166          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|1098355167|emb|SFD82044.1| (Uncaracterized surface protein containing fasciclin (FAS1) repeats [Massilia yuzhufengensis])

HSP 1 Score: 94.7449 bits (234), Expect = 2.397e-19
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL  TL GPGP+TV APTD A   ++    L    ++ K  LT +L+YH++PGK M      AA      VKT+E S L ++  GGTV+VD+ ++++  +EA NGV+HV+DS+++P
Sbjct:   21 DIVDTAKSAGSFNTLVAAVQAAGLVDTLKGPGPFTVFAPTDEAFA-KIPKAKLDALLKD-KAALTKVLTYHVVPGKVM------AASVKPGAVKTVEGSSLMVSAKGGTVMVDKAKVVKTDVEADNGVIHVIDSVIMP 150          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|653065568|ref|WP_027316874.1| (Nex18 symbiotically induced protein [Microvirga flocculans])

HSP 1 Score: 95.1301 bits (235), Expect = 2.416e-19
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
Query:   93 ETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDAR--TRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            + D++ T A  G+F  L    KE GL +TL GPGP+TV APTDAA     A     +   E K  LT +L+YH++PG+       V A D       KT+    L+++V G  V++++  + +  + A NGV+HV+D+++LP
Sbjct:   29 DQDIVETAAAAGQFKTLASALKEAGLVSTLKGPGPFTVFAPTDAAFAKLPAGTVENLLKPENKDKLTAILTYHVVPGR-------VTAADVTKLKEAKTVNGKMLNVSVKGSGVMINDANVTQADITASNGVIHVVDTVILP 163          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|947656741|ref|WP_056319456.1| (hypothetical protein [Achromobacter sp. Root170] >gi|946063387|gb|KRB16025.1| hypothetical protein ASD87_23845 [Achromobacter sp. Root170])

HSP 1 Score: 94.3597 bits (233), Expect = 3.224e-19
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDART-RVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL  TL GPGP+TV APTD A      +   + A  + K  LT +L+YH++PGK M       A D +  +VKT+E S L+IAV GG V VD  ++++  + A NGV+HV+D++L+P
Sbjct:   21 DIVDTAKSAGSFNTLVTAVQAAGLVDTLKGPGPYTVFAPTDEAFAKVPKDK--LDALLKDKAALTKVLTYHVVPGKVM-------AKDVKPGKVKTVEGSSLTIAVDGGNVTVDNAKVVKTDVAADNGVIHVIDTVLMP 150          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|518766556|ref|WP_019923845.1| (beta-Ig-H3/fasciclin [Duganella zoogloeoides])

HSP 1 Score: 93.9745 bits (232), Expect = 3.851e-19
Identity = 54/138 (39.13%), Postives = 84/138 (60.87%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL++TL GPGP+TV APTDAA   ++    L    ++ K  LT +L+YH++PGK M     V +GD    VKT+E + + +AV G  V+VD+  + +  + A NGV+HV+D++L+P
Sbjct:   21 DIVDTAKAAGSFNTLVTAVQAAGLESTLKGPGPFTVFAPTDAAFA-KIPKAKLDALLKD-KAALTKVLTYHVVPGKVMAAD--VKSGD----VKTVEGASVKVAVKGDKVMVDKAHVTKTDIAADNGVIHVIDTVLMP 150          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|947482832|ref|WP_056147126.1| (MULTISPECIES: hypothetical protein [Duganella] >gi|944716508|gb|KQN67726.1| hypothetical protein ASF04_18255 [Duganella sp. Leaf61] >gi|1078250675|gb|OFA00025.1| immunogenic protein MPT70 precursor [Duganella phyllosphaerae])

HSP 1 Score: 93.9745 bits (232), Expect = 4.600e-19
Identity = 54/138 (39.13%), Postives = 84/138 (60.87%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL++TL GPGP+TV APTDAA   ++    L    ++ K  LT +L+YH++PGK M     V +GD    VKT+E + + +AV G  V+VD+  + +  + A NGV+HV+D++L+P
Sbjct:   21 DIVDTAKAAGSFNTLVTAVQAAGLESTLKGPGPFTVFAPTDAAFA-KIPKAKLDALLKD-KAALTKVLTYHVVPGKVMAAD--VKSGD----VKTVEGASVKVAVKGDKVMVDKAHVTKTDIAADNGVIHVIDTVLMP 150          
BLAST of EWM22009.1 vs. NCBI_GenBank
Match: gi|1134277198|ref|WP_076517738.1| (hypothetical protein [Achromobacter sp. MFA1 R4] >gi|1095041138|emb|SEI60244.1| Uncaracterized surface protein containing fasciclin (FAS1) repeats [Achromobacter sp. NFACC18-2] >gi|1131765166|emb|SIT17771.1| Uncaracterized surface protein containing fasciclin (FAS1) repeats [Achromobacter sp. MFA1 R4])

HSP 1 Score: 93.5893 bits (231), Expect = 6.184e-19
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 0
Query:   95 DLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLP 232
            D++ T    G F  L+   +  GL  TL GPGP+TV APTD A      +   + A  + K  LT +L+YH++PGK M     V AG     VKT+E S L++ V GGTV+VD  ++++  + A NGV+HV+D++L+P
Sbjct:   21 DIVDTAKSAGSFNTLVTAVQAAGLVDTLKGPGPFTVFAPTDEAFAKVPKDK--LDALLKDKAALTKVLTYHVVPGKVMAKD--VKAGP----VKTVEGSSLTVTVKGGTVMVDNAKVVKTDVVADNGVIHVIDTVLMP 150          
The following BLAST results are available for this feature:
BLAST of EWM22009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102410|gb|EWM22009.1|0.000e+0100.00beta-ig-h3 fasciclin [Nannochloropsis gaditana][more]
gi|780355039|ref|WP_045568893.1|1.054e-1936.43fasciclin [Vibrio sp. S234-5] >gi|778245941|gb|KJR... [more]
gi|1015843707|ref|WP_062840036.1|1.910e-1940.29hypothetical protein [Achromobacter xylosoxidans] ... [more]
gi|655226110|ref|WP_028640098.1|2.346e-1937.76hypothetical protein [Novosphingobium acidiphilum][more]
gi|1098355167|emb|SFD82044.1|2.397e-1939.86Uncaracterized surface protein containing fascicli... [more]
gi|653065568|ref|WP_027316874.1|2.416e-1936.62Nex18 symbiotically induced protein [Microvirga fl... [more]
gi|947656741|ref|WP_056319456.1|3.224e-1940.29hypothetical protein [Achromobacter sp. Root170] >... [more]
gi|518766556|ref|WP_019923845.1|3.851e-1939.13beta-Ig-H3/fasciclin [Duganella zoogloeoides][more]
gi|947482832|ref|WP_056147126.1|4.600e-1939.13MULTISPECIES: hypothetical protein [Duganella] >gi... [more]
gi|1134277198|ref|WP_076517738.1|6.184e-1940.58hypothetical protein [Achromobacter sp. MFA1 R4] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8692rna8692Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications