rna869, rna869 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna869
Unique Name	rna869
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4360
Alignment location	CM002456.1:607274..608830 +

Link to JBrowse

Properties


Property Name	Value
Product	family s49
Orig transcript id	gnl\|cribi\|Naga_100017g61.314.mrna
Orig protein id	gnl\|cribi\|Naga_100017g61.314
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:607274..608830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g61	gene832	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna869	rna869-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29816.1	cds869	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:607274..608830+
coding sequence from alignment at CM002456.1:607274..608830+

mRNA sequence

>rna869 ID=rna869|Name=rna869|organism=Nannochloropsis gaditana|type=mRNA|length=4360bp
TGCTTTTGGGAAAACCACACCTTTCGCTTTATGCCACCATGACAAGGCCA
TTTCTTCCTGTCGAAGTAAAGAAATGAATAATGAAATCATTGGAAAACGA
TTTTCTGCAGGCGTGGGGAGGTTAAAACGATCTGCGTTGTCAACCTTGGG
CATTTTTGGGTGACATAACTGGCATTAAATGAAGTGTATGTTTATTCATC
AGATTTTGAACAAAAAACAAATTTACATTGCAGTGATTGAGCATTCGAAG
TCATTCGTCTCGTGCGCGGGGAACATCACCTCGCCTCGCTGGAAGAGCTG
GCAAGCCGTGTGGAGGGAGCCTCGGCTGAACTCAACACAGCGCCCCACAC
GGAAATCAATTGTGCCATATCAGCCACCTTCGTCTACCGAATCGATATGG
CTGACTTTTAAAACCAGCTATTCTTTTTTTGCCTGCGTTTTTTGAGGGAT
GACAGCCTCGGAGTACATGATTAAAGAACTCAACAACCCGGGCCGGGGGC
TCGAGCGAGAGAGGGGGGGCTCGCGATGACAAAGATGGCAACCATAGCAC
ACCACGCCTATTACGGCTTTTTTTCCTGTCCCGTATGTAAGCACTTTACG
GTCTGGCACATGATGATGCTCTCACACGATTTCTTGGTCGCACGACGATG
GCTCCCATTTCCTCCCAGGGAAAGTGGTAAGGTGTCAGGATTGAGGGAAA
GACCCGCTGTGATTTCCTTCGGAAAAGGCATCACGCGGCTCTTTGAAGAC
CGCGACAAACGACTTCGGTGCTTCTAGACTGCAAACGTTCCCTTTGATAT
TAGGTAGCGATGCCCAGGACGCTGTCTTGGAGGAAGGGGAGGAAGGCCGA
GGGCCCCACGGGGGAGCCGGGAACGGAGTGCAGCAGCAGCGTCGACAGCT
GCGGCAGCCAGGACAAGGCAAGCACAGGAGCAGTGAGGACCATGTCGGGC
CGCCCCCCTACCCCCACGAACCACGCGGACGGATCAACAGGCGCGCTGAG
CAGGAAGCCGAGCATCGGCAGCGGGGGGCCCTGTGAGAGAAACCCAGCAA
CCGGCGCGTCGTTCTCCCCTGCCTGCCCCCCTGGCACCCTCTCACCAGCT
TCTTCCGCCTCTTACGGCGCGCGTAACCCGCGGACGGGGAACCCTGCCAC
CGTGAATGACCCGCCTCGGCTGCACGTGGGAGGGAGCGAAACAAAGGAGG
GTCAGGTGCCGGCAGGCACGGACTACGACTCTTGTATGGAGCAGGGTGAA
GCCACAATCTCCCCACCGCTACAACATTGGGGCCATTCCATGAGCGACAG
CGGCAGTAGCCTCAGCACCACGGCCAGCGGCACCCTCCAGGACAGCCGCG
TAGCCCCCGCCCCAGGCGCTTGTGCGGGGAAACAAGTGTCAGGGAGCGCC
GAGCTGTCGGATCGGGCCCGGGAGGCTCTTTTGAACAAAAAGTTGGCAGA
TTTGGAGCGGAAGCTCATGGGGGCGGTGGGGGTGGGAGGCCTTGAGGACC
CCCCGGCCCTTGTCTCCCCGACAGGCTCGACCTGCAGCTTGGGCAGCTTC
AGCGTCAGCAACCAAGACAGCGTGCGCGGGCTCAGCGGGACGTACGCCGC
CCTTTCCAGTTCCGTGAACGGAGGGAGCATCGGAGGCAGCAGTGGGAGTG
GGGGGGGCACGCTGAACGGCGGAAGCACGGCGGCCAAGAAGGCCATGCAG
ATCGTGAAGGAGAAGGTCCGGTTCGGTGGGAAACGGCAGCTGGTTCTCGT
CAAGCACGAACGCGACGCACTTATCAACAAGTGGGGGGTGGAAAAGGTGG
AACGCGCGGAAGAGGAGGCACTTCAGCTCTTCTCCTCCATGGACAGCTGT
CAGGGGGGTGCGGAGGGTCAGATCTCTGCCAAAGAGTTTCAGATGTGCCT
TGGGGCCGTCGGCGGCGGCTGCGTGACGAGCGAGTTCCCCAGGGTTCTAT
TCTCGGCCATCGACAAGGACAAAGATGGCGCCATCTCCTTCAGCGACATG
ATGCAGTGGCTGCTGACTATGGCGCATGGCTCGGACGCCGAGAAACTGCG
GTACGGCTTCGATTTGTGCGATCAGAACAAGGACGGCCGGATCGACAAAA
GAGACCTGCTGACTACAATTGAGACGGTCTTTTCAATATTGACGGGCTTG
AATTTGGGCGATGATATTTGTGCCAAGACGTTCGTCAATACTGTGTTCGG
GCGCCTGGGAGTGGACCAGGGCGGAGAAGCTGGAAAGGAGGAAGCGCCGG
GAGCAGGTAGGGAAGGAAAGACGGCTATTGACGGCGACGAGGGGGCGTAC
GTTCGGGGTGAGCCTCAAGAAAAGGATAACGACAAGCCTGGGAGCGAGGG
GGCAGGCGTAGAGGAGGAGGAGCAGGCGATCTCCTGGGAGGCTTTCCGAG
CCGGCTCCAAGTCCATCGAGACCTTCATGCGGACACTGGGCTCGCGCGAC
GTCTCCTGTTACCACACACCTTGCGCTCGTTCGCGGAACAAGACGGCCAC
GAACGTTGTGTTTGGCAGTTCCAAATGGCGTTTTATCACCAACATGATGC
TCGGCCTGGAGTTCGCCATTCGGGGCACCGAAGAACGAAAAATCGAAAAC
TTGACACCCTCGCCCTCGCCTCGCCAGCTCGTGCAGGCAAACCAAGAGTA
TCTCCTCCAAAACAGCCTCTCCATTGGCTCCTCCGCATCTTTTATGGCCA
GTAGTGGGTGGAGTGGGAACAGCAATGGGATCGGTCCCGATTTCCTCCAA
ATGGCGCGGGGGGAGAACGGTGTGGGCCCGATCGAGCGGCAGGACAGCTG
TGTTTCGAGCATCTGTGGGCCAAGCATCAGCAGTACCACTGGTCTCCCAC
GCAGCACTAGTTTCAATTTTTTGGGCGGCAGCACCGGTGGCGGGAGCGAA
AGTAGCTCAGGAGCCCCCGCCGCTTACATGGAAAGGCTCCGGTCAGATTT
GAGGGCTCAGAACTGCAGCAAGGAAGTTTTCAGCGTGCCGACAAGTGATG
GAAGTCGCTGTCGGATGGCCTGTTACGGCGCGGAGAAGTTCCGGGAGGTG
CGACAAGCGTGTGGGATCGAGGACGACGACTTCTTGCTGTCGGTTGGAAT
ACGGCAAGTCATCGGATCGTTGCTCTTGGGAGATCTTTTCGGTCTATCGG
AGCAAGTGTCCGAGGGCAAGTCTGGCTCCTTTTTTTACTGGTCGCAGGAC
GGGCGGTACATGGTCAAGACGATATCGCGCGCCGAGTCCTACCAGATGCG
CAAGATCCTTCAATCCTACCACGAGCACATGACTGCCCACCCGGACAATC
TGCTCATGCGGATACTGGGGCTGTATCGGCTGAAACTCAACGCGGAGAAA
TGGGACCTGATAGTCATCGAGAACATCTTCACCACCTCCCATGGTATCCA
CGAGCGCTTTGACTTGAAGGGCTCCACCTACGAACGTACTGTCGGAGCAC
GTGCGAGATGCTCTCCCGGGGTCGTTATGAAGGACAAGGATTTCCTGGAA
CTAGGACGCACGATTCATGTTGGACCGGAGCTGGCTGAGAGACTCAAGAC
GCAGATTGCGATCGACACTCAGTTTTTGGCGCGAAACGACATTATCGATT
ATTCGTTTCTCGTGGGCGTGCACTATGTCGACAGAGGTATTCCAGAAGAT
ATATGGATCGAGCAGCAAAGGGAGGGCCTGGAGAAGATGTACGCCGATTT
CCTGAGTGTTAGGAAGCAGTACCCGTTCTTTCGAAAGAACTTTGGCTTCA
CGGAATTCTGCCACTGGGCTTACAGTCACCATCGATTTGACAAGAAAGAC
TCGCTGTCATTGCTTGATAAGCAGACGGGTGCATCAAGTATCTATGGCGG
TGTCGGGTGGCGGTCCAGGGGCAGTCGTGGGTTTAATAGCCCGTCACCAA
CCGCTGCCACCACACTGAATGCCCGACAAGGGATACGCGCCTACCGGACC
TTGCAAGATCAACTCGACGGAGAGCCCGATCAAATTCTGTTCTTCGGGAT
TATAGACTTGCTGGTGCCATTTGACTCGCGAAAGCGTGGTGAATATTTGA
TGAAGAGTGTCTATCACGTGGGTAAGCAAGACTTTTCCGTCATTCCCCCG
CAAGACTATAGGAAGAGATTTCTCCAGTTCACGTCTAATGCCATTCGATG
AGAGAGCGAGGAGAAGATGTGGAAACAGAAGCTGCAAGCACCAGGGATGT
GAATTATTTGTTTATAGAAACGAGTAACATGCCGTAATGGGGAGGTATCT
TCGATTGAAGGCATAAGAACTATGTTTTCTGCGTAAGTGTCGCGTATTTG
TGACCTTTCTAGTCAGCAAGTGATGTGCTGAAATCAAATCTTACAGAATC
GGTTTTGAAT

protein sequence of rna869

>rna869-protein ID=rna869-protein|Name=rna869|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MPSIACTYSMAIFPQDVAASGGYWLLAAGQEVYADKASIVGSVGVVSGGF
GLHKLLEHHGIERRLHTAGTSKARLDPFLPARAEDVAYLRDTLAEIHEVF
KAHVRARRGAKISGHESTIFSGDFFTGARGVELGLVDAIGSLQSVSKEKL
GEKVRINYLNARPRFPFLPGLGTGTGDGSRMSWSAHLADAILESAEERIE
ERLWRSRVGL

mRNA from alignment at CM002456.1:607274..608830+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna869 ID=rna869|Name=rna869|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp|location=Sequence derived from alignment at CM002456.1:607274..608830+ (Nannochloropsis gaditana)
CCCAAGGTTGACAACGCAGATCgttttaacctccccacgccTGCAGAAAA
TCGTTTTCCAATGATTTCATTATTCATTTCTTTACTTCGACAGGAAGAAA
TGGCCTTGTCATGGTGGCATAAAGCGAAAGGTGTGGTTTTCCCAAAAGCA
AGTCCAATTGTCAATGCCGTGCATCTGCAAGGCATAATCGCCGCCAGGGC
CGGGCCCCGCGGGGTGTCCTATGCCGCCCTAGAAAGCCATTTGGGTACGG
TAAAAAATTGCTTTGTTCAACCACTCTTTCATTTTCGAAGATGAAGCGCC
CTTGAAATGTGATGGTAGACATCGAGGAATAAAGGTGAGAAATATCGACG
ACTTATCGGCACCGGCGGCGCTTTTTTTAAACCCCCGCAGAAGCAGCGTT
CAAGGGCGTAGGAGTCCACACTCCGGACGCCGTCGCCCTAGTAGTAAACT
CGCCGGGGGGCAGTCCAGTGCAGAGCAATTTGATCGGACACAAAATTCAA
ACATTGCATGAGAAGTATAAGGTTCCCGTTTGGGCCTTCGCCGAGGTGAA
GTGggttggagggaaagaggcaggcaGGGATACCCGAAAGCTAGTAGACC
TCTTCGTCACCGAATGCCCTCCATCGCGTGTACATACTCGATGGCCATTT
TCCCGCAGGACGTGGCCGCGAGTGGGGGCTACTGGCTGCTTGCCGCCGGG
CAGGAGGTCTACGCGGACAAGGCCAGCATCGTGGGCTCTGTCGGCGTTGT
CTCTGGGGGCTTCGGCCTGCACAAGCTTCTGGAACACCACGGGATAGAGC
GACGGCTGCACACGGCGGGGACGTCCAAGGCACGCCTggaccctttcctc
ccggctcgagcggaggacgtggcgtACCTGAGAGACACGTTGGCCGAGAT
CCacgaggcgaggaagggggggagggagggaagggggaggggaagagagg
ggaaagcgagggagaagagggattGCGGCATATGACAGTGGCTCAAAGCA
GACAAGCACTACCCTTTGTTCGTCCAAGGGTCTGTGCGGCAGGTACGACG
GCTCtcaacccccctccccaccctcggACACGCAGGTCTTCAAAGCGCAC
GTCAGAGCCcggcggggggcgaagaTCTCAGGGCACGAGAGCACTATTTT
CAGCGGGGACTTCTTCACCGGGGCGCGAGGGGTAGAGCTGGGCCTGGTGG
ACGCAATCGGCTCCCTCCAGTCCGTGTCCAAGGAAAAGCTGGGCGAGAAA
GTGCGCATCAATTACCTGAACGCCCGAccccgcttccctttcctccccgg
cctcggcACAGGGACTGGGGATGGAAGCCGAATGTCGTGGTCGGCCCATC
TGGCGGATGCAATCTTGGAAAGCGCGGAGGAGCGGATAGAAGAACGCCTT
TGGAGGAGCCGCGTGGGGCTCTGAGGTcaaaggcaggcgggggacaaCGG
GTTTTCAACGGAGAGGATGTAGACTGCGGTCGCAGCGCTCTTAGGTAGAT
GTTCCTGGTGGGCACGAAAACGCAAACAAGCTCGCAAAATTACAGCCTCG
GCCTCGC

Coding sequence (CDS) from alignment at CM002456.1:607274..608830+

>rna869 ID=rna869|Name=rna869|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002456.1:607274..608830+ (Nannochloropsis gaditana)
ATGCCCTCCATCGCGTGTACATACTCGATGGCCATTTTCCCGCAGGACGT
GGCCGCGAGTGGGGGCTACTGGCTGCTTGCCGCCGGGCAGGAGGTCTACG
CGGACAAGGCCAGCATCGTGGGCTCTGTCGGCGTTGTCTCTGGGGGCTTC
GGCCTGCACAAGCTTCTGGAACACCACGGGATAGAGCGACGGCTGCACAC
GGCGGGGACGTCCAAGGCACGCCTggaccctttcctcccggctcgagcgg
aggacgtggcgtACCTGAGAGACACGTTGGCCGAGATCCacgagGTCTTC
AAAGCGCACGTCAGAGCCcggcggggggcgaagaTCTCAGGGCACGAGAG
CACTATTTTCAGCGGGGACTTCTTCACCGGGGCGCGAGGGGTAGAGCTGG
GCCTGGTGGACGCAATCGGCTCCCTCCAGTCCGTGTCCAAGGAAAAGCTG
GGCGAGAAAGTGCGCATCAATTACCTGAACGCCCGAccccgcttcccttt
cctccccggcctcggcACAGGGACTGGGGATGGAAGCCGAATGTCGTGGT
CGGCCCATCTGGCGGATGCAATCTTGGAAAGCGCGGAGGAGCGGATAGAA
GAACGCCTTTGGAGGAGCCGCGTGGGGCTCTGAATGCCCTCCATCGCGTG
TACATACTCGATGGCCATTTTCCCGCAGGACGTGGCCGCGAGTGGGGGCT
ACTGGCTGCTTGCCGCCGGGCAGGAGGTCTACGCGGACAAGGCCAGCATC
GTGGGCTCTGTCGGCGTTGTCTCTGGGGGCTTCGGCCTGCACAAGCTTCT
GGAACACCACGGGATAGAGCGACGGCTGCACACGGCGGGGACGTCCAAGG
CACGCCTggaccctttcctcccggctcgagcggaggacgtggcgtACCTG
AGAGACACGTTGGCCGAGATCCacgagGTCTTCAAAGCGCACGTCAGAGC
CcggcggggggcgaagaTCTCAGGGCACGAGAGCACTATTTTCAGCGGGG
ACTTCTTCACCGGGGCGCGAGGGGTAGAGCTGGGCCTGGTGGACGCAATC
GGCTCCCTCCAGTCCGTGTCCAAGGAAAAGCTGGGCGAGAAAGTGCGCAT
CAATTACCTGAACGCCCGAccccgcttccctttcctccccggcctcggcA
CAGGGACTGGGGATGGAAGCCGAATGTCGTGGTCGGCCCATCTGGCGGAT
GCAATCTTGGAAAGCGCGGAGGAGCGGATAGAAGAACGCCTTTGGAGGAG
CCGCGTGGGGCTCTGA

Synonyms

Publications