rna8688, rna8688 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8688
Unique Name	rna8688
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1442
Alignment location	KK037249.1:594773..595295 +

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized protein family UPF0061
Orig transcript id	gnl\|cribi\|Naga_102783g1.9587.mrna
Orig protein id	gnl\|cribi\|Naga_102783g1.9587
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:594773..595295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102783g1	gene8421	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8688	rna8688-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22014.1	cds8659	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:594773..595295+
coding sequence from alignment at KK037249.1:594773..595295+

mRNA sequence

>rna8688 ID=rna8688|Name=rna8688|organism=Nannochloropsis gaditana|type=mRNA|length=1442bp
CAAGCCCTCCAAAAATAATGTCAAGGGCTAGTAGGCATGCAAAGGAAATA
CTTCGACTCCTCTGAGTGCCCGGTGCATTGCGCATTATGTGGTGCGTGTT
TGAGCTGTCGTACGTGATATCACCTGACCTCCTCTCTCCTTACCACATAT
ATATTCCACTTTTCGTCCATGCACCTTCACACAGCGTTCCCATTTACCTC
CAGAGTCTCGTGCATGCCTGGCACCACTGGCAGGGCACCGGGCACATTGC
TTTCGTCCTTTCAAACCTTTCTTCTGACCGCAGCCCTCCTTCTCGCCCGT
CCTCAACCTGCGGCGTCCCGCTCCTCGCGTCGGCTGCCCAAGACGGCGCC
CTTACAGACCCTGGCGCTCGCACGCCCTTTCCTCTCAGTTGCATCTCGCA
TCGGAGCCCACCGCCCGAGCGTGACATCATTTGCCCGGTGGTCCGCCGCC
TTTCAATACTTCTCGGCTCACTCGGTCTTCCCCACAATGAGGAGTGAAGC
TGTCCGTGCCGCCAGCGACAGTGCACGCCAGGCGCCCGGGCATTCCATCC
CTGCAGCATCCAGACCGCAGCCCAAGACCTACACCCTGGAGACCCTCCCT
TTCGACAATTTGGCACTGCGCTCCCTACCCCTCGATCCGCAGCCCGAGAA
TTTTATACGGCCGGTGCCCAACAGTGTGTACTCGCGCGTGGAGCCGGAGC
CCCTGAAGAACCCGGTGCTCGTGGCGCTCTCCCCCGACGCCCTTACCGAC
CTCCTCTCCCTCGACCCCTCGGAACTGAAGCGGGAGGAGGACCTCGCGGC
CTATTTGGGGGGCAACAAGCGCCTGCCAGGCAGCGAAACCTACGCACATT
GCTACGCTGGGCACCAATTTGGCGCTTTTTCCGGCCAGCTCGGGGACGGA
GCGGCTATCTCTCTCGGCGAGGTGGTGGGCGAGAGGGGGGAACGTTGCGA
GATCCAACTCAAAGGGGCGGGGCCCACGCCCTACTCGCGACGGTGAGAGG
GTGGGGAACCCTGGCGGGGGGGGGAGGAAGGGCGGGGATTTGGAAGGGCT
GCCTGGTAGTCGCACGGCTCGCTCTTGACTTCTCTCCGCTGATCCCCTCC
TCCCCTCCCTCCCTCTTTCCCGGCAGGGCGGATGGACGCAAGGTCCTTCG
CTCCTCCATCCGGGAATTCCTGTGCTCGGAGGCCATGAGCTTCCTCGGGG
TCCCCACCACGCGGGCTGGTGCCCTCATCACCAGCGACACGCTCACCCAG
CGAGACATCTTCTACAACGGAAACGTGATCAATGAGCGATGCTCCGTGGT
GACGCGCCTCGCGCCTTCTTTCCTGCGCTTTGGCTCCTTCGAAGTGGTCA
AAACCCAGGACGCCTACACGGGGCGGGCGGGGCCGTCGCCGGGGAACACA
GAGCTGCTGAGGTGAGGGAGGAAGGGAGGGAGGGAGGGAGGG

protein sequence of rna8688

>rna8688-protein ID=rna8688-protein|Name=rna8688|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLP
LLSSLYDDERRRSWWRSFSRRWRRRRRISR

mRNA from alignment at KK037249.1:594773..595295+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8688 ID=rna8688|Name=rna8688|organism=Nannochloropsis gaditana|type=mRNA|length=523bp|location=Sequence derived from alignment at KK037249.1:594773..595295+ (Nannochloropsis gaditana)
ATGGACTTCTTCGACCCCGACTTCATCCCCAACGGGAGCGACAACGGAGG
GCGATACACTTACGTCAAGCAGCctggtagggagggcgggaaagggagag
agggagagggggagggaaggagggagaagagaatgTTGACGGACTTCCAA
CGTTTTTCTTGGCAACGTGTCCTCCGCAGGTCCTAAAGACCCGACTCTCC
ACtccttcatccttccctccttccctccttccctccttccctccttccct
tcctccctcccttcctcttccccccccccccagagATTTGCAAGTGGAAT
TTGGAAAAATTTGCGGaagctctctccctcctcctccccctcgaccgctc
ccttcccctcctctcttccctttacGATGACGAGTACTCGCGCGCCTACT
TTTTCTTGATGCGGAAAAAGCtgggcttgagggagggaggggcggagggc
gggaaggaggaggaggagctggtggagaagcttttcaagacgatggagga
gacggcggcgGATTTCACGATGA

Coding sequence (CDS) from alignment at KK037249.1:594773..595295+

>rna8688 ID=rna8688|Name=rna8688|organism=Nannochloropsis gaditana|type=CDS|length=729bp|location=Sequence derived from alignment at KK037249.1:594773..595295+ (Nannochloropsis gaditana)
ATGGACTTCTTCGACCCCGACTTCATCCCCAACGGGAGCGACAACGGAGG
GCGATACACTTACGTCAAGCAGCctgagATTTGCAAGTGGAATTTGGAAA
AATTTGCGGaagctctctccctcctcctccccctcgaccgctcccttccc
ctcctctcttccctttacGATGACGAgaggaggaggagctggtggagaag
cttttcaagacgatggaggagacggcggcgGATTTCACGATGAATGGACT
TCTTCGACCCCGACTTCATCCCCAACGGGAGCGACAACGGAGGGCGATAC
ACTTACGTCAAGCAGCctgagATTTGCAAGTGGAATTTGGAAAAATTTGC
GGaagctctctccctcctcctccccctcgaccgctcccttcccctcctct
cttccctttacGATGACGAgaggaggaggagctggtggagaagcttttca
agacgatggaggagacggcggcgGATTTCACGATGAATGGACTTCTTCGA
CCCCGACTTCATCCCCAACGGGAGCGACAACGGAGGGCGATACACTTACG
TCAAGCAGCctgagATTTGCAAGTGGAATTTGGAAAAATTTGCGGaagct
ctctccctcctcctccccctcgaccgctcccttcccctcctctcttccct
ttacGATGACGAgaggaggaggagctggtggagaagcttttcaagacgat
ggaggagacggcggcgGATTTCACGATGA

Synonyms

Publications