EWM22014.1, cds8659 (CDS) Nannochloropsis gaditana

Overview
NameEWM22014.1
Unique Namecds8659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:594773..594848 +
Alignment locationKK037249.1:595056..595155 +
Alignment locationKK037249.1:595229..595295 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22014.1
ProductUncharacterized protein family UPF0061
Orig transcript idgnl|cribi|Naga_102783g1.9587.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:594773..594848 +
KK037249.1supercontigKK037249.1:595056..595155 +
KK037249.1supercontigKK037249.1:595229..595295 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003846UPF0061
Homology
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|585102419|gb|EWM22014.1| (Uncharacterized protein family UPF0061 [Nannochloropsis gaditana])

HSP 1 Score: 160.229 bits (404), Expect = 7.162e-50
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRRWRRRRRISR 80
            MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRRWRRRRRISR
Sbjct:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRRWRRRRRISR 80          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|565319900|gb|ETE70920.1| (Selenoprotein O, partial [Ophiophagus hannah])

HSP 1 Score: 85.8853 bits (211), Expect = 7.910e-18
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL KFAEAL   LPL+ S+P+L   YD E  + + +   R+
Sbjct:  150 MDRYDPEHICNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDAEFEKHYLQIMRRK 220          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|1004692634|ref|XP_015745922.1| (PREDICTED: selenoprotein O [Python bivittatus])

HSP 1 Score: 85.8853 bits (211), Expect = 8.959e-18
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL KFAEAL   LPL+ S+P+L   YD E  + + +   R+
Sbjct:  264 MDRYDPEHICNGSDNTGRYAYNKQPEICKWNLTKFAEALVPELPLEMSIPILEEEYDAEFEKHYLQIMRRK 334          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|1176330843|ref|XP_020668536.1| (selenoprotein O isoform X2 [Pogona vitticeps])

HSP 1 Score: 85.5001 bits (210), Expect = 1.154e-17
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL K AEAL   LPLD S+P+L   YD E  R + +   ++
Sbjct:  356 MDRYDPEHICNGSDNAGRYAYNKQPEICKWNLGKLAEALVPELPLDISIPILEEDYDAEYERHYLQKMRKK 426          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|1176330841|ref|XP_020668533.1| (selenoprotein O isoform X1 [Pogona vitticeps])

HSP 1 Score: 85.5001 bits (210), Expect = 1.169e-17
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL K AEAL   LPLD S+P+L   YD E  R + +   ++
Sbjct:  403 MDRYDPEHICNGSDNAGRYAYNKQPEICKWNLGKLAEALVPELPLDISIPILEEDYDAEYERHYLQKMRKK 473          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|927130439|ref|XP_013909722.1| (PREDICTED: selenoprotein O [Thamnophis sirtalis])

HSP 1 Score: 85.1149 bits (209), Expect = 1.444e-17
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL KFAEAL   LPL+ S+P+L   YD E  + + +   R+
Sbjct:  349 MDRYDPEHICNGSDNTGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDAEFEKHYLQIMRRK 419          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|221116553|ref|XP_002164964.1| (PREDICTED: selenoprotein O-like [Hydra vulgaris])

HSP 1 Score: 85.1149 bits (209), Expect = 1.586e-17
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSF 68
            MD+F+ DFI N SD  GRY+Y KQPEICKWNL K AEA+   +PLD++  +++ +YD E R S+++  
Sbjct:  336 MDYFNSDFICNASDTNGRYSYKKQPEICKWNLLKLAEAIKNAVPLDKTKEIINEIYDSEFRESYYKGM 403          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|762129176|ref|XP_011447705.1| (PREDICTED: selenoprotein O [Crassostrea gigas])

HSP 1 Score: 84.3445 bits (207), Expect = 2.490e-17
Identity = 34/72 (47.22%), Postives = 55/72 (76.39%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRRW 72
            MD +DPDFI N SD+GGRYTY+KQP+ICKWN++KFAEA+  ++PL +++P  + ++D+E    + +   +++
Sbjct:  344 MDKYDPDFICNASDDGGRYTYIKQPQICKWNIKKFAEAIQGVVPLAKTVP-ETKIFDEEYSDYYTKKMRKKF 414          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|405975916|gb|EKC40447.1| (Selenoprotein O [Crassostrea gigas])

HSP 1 Score: 84.3445 bits (207), Expect = 2.987e-17
Identity = 34/72 (47.22%), Postives = 55/72 (76.39%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRRW 72
            MD +DPDFI N SD+GGRYTY+KQP+ICKWN++KFAEA+  ++PL +++P  + ++D+E    + +   +++
Sbjct:  308 MDKYDPDFICNASDDGGRYTYIKQPQICKWNIKKFAEAIQGVVPLAKTVP-ETKIFDEEYSDYYTKKMRKKF 378          
BLAST of EWM22014.1 vs. NCBI_GenBank
Match: gi|1002582322|ref|XP_015670168.1| (PREDICTED: selenoprotein O [Protobothrops mucrosquamatus])

HSP 1 Score: 83.9593 bits (206), Expect = 3.503e-17
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 MDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDERRRSWWRSFSRR 71
            MD +DP+ I NGSDN GRY Y KQPEICKWNL KFAEAL   LPL+ S P+L   YD E  + + +   R+
Sbjct:  354 MDRYDPEHICNGSDNTGRYAYNKQPEICKWNLTKFAEALVPELPLEISTPILEEEYDAEFEKHYLQMMRRK 424          
The following BLAST results are available for this feature:
BLAST of EWM22014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102419|gb|EWM22014.1|7.162e-50100.00Uncharacterized protein family UPF0061 [Nannochlor... [more]
gi|565319900|gb|ETE70920.1|7.910e-1856.34Selenoprotein O, partial [Ophiophagus hannah][more]
gi|1004692634|ref|XP_015745922.1|8.959e-1856.34PREDICTED: selenoprotein O [Python bivittatus][more]
gi|1176330843|ref|XP_020668536.1|1.154e-1756.34selenoprotein O isoform X2 [Pogona vitticeps][more]
gi|1176330841|ref|XP_020668533.1|1.169e-1756.34selenoprotein O isoform X1 [Pogona vitticeps][more]
gi|927130439|ref|XP_013909722.1|1.444e-1756.34PREDICTED: selenoprotein O [Thamnophis sirtalis][more]
gi|221116553|ref|XP_002164964.1|1.586e-1751.47PREDICTED: selenoprotein O-like [Hydra vulgaris][more]
gi|762129176|ref|XP_011447705.1|2.490e-1747.22PREDICTED: selenoprotein O [Crassostrea gigas][more]
gi|405975916|gb|EKC40447.1|2.987e-1747.22Selenoprotein O [Crassostrea gigas][more]
gi|1002582322|ref|XP_015670168.1|3.503e-1756.34PREDICTED: selenoprotein O [Protobothrops mucrosqu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8688rna8688Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications