rna8682, rna8682 (mRNA) Nannochloropsis gaditana

Overview
Namerna8682
Unique Namerna8682
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationKK037249.1:580726..582353 -

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Properties
Property NameValue
Productcalcium-binding protein
Orig transcript idgnl|cribi|Naga_100361g1.4768.mrna
Orig protein idgnl|cribi|Naga_100361g1.4768
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:580726..582353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100361g1gene8415Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8682rna8682-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22015.1cds8653Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8682 ID=rna8682|Name=rna8682|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
CGGGGAAGTAAGAGAGGTCAGGGCGCCGGGACCCTGGAAGTGTGCTCGGC
GGCAGCGTCTTGGCAATGGGCGCCGGGCTTCACCCTTCTTCATCCTCTTT
CATTCCCCGCGCCTCTACCCTACCGCCAGGTCTTCGACTCGGACGACAAC
AAGTTCATCGACCCCGCCGAGTTCAAAAAAACCTTACAGAGCCTCGGCTT
CACCGGGGAGGGACGGCCTGCGCTCACCGACGAAGAGATCGAGTTTCTCT
TCTCGACCACGGACAAGGACTCGAATCAGATGATCGATTTCAAGGAGTTT
GTGGACCGCTTCTGGGAGCTGGATCTCTACCAGAAGGAGGACGGGAACTT
CGTTCCTTACCTCCCTCGCAAGGACGAGGAACCCCCCACCTTGGAGGCTG
GGGCCTCTCCATTTGCCCCCTACCCCCGCCGGGACGATGACTACCTCTTT
TTTGGGAAGAGCACGCCCTTGGACAACGTCAGGACTATGAAGGTGGGTCC
TCCCTCTGCCTGCGACACCTCTTTCCTCCCCGGGACGCCAGAGGGCGCGA
TTTGACTCATACACCTTGCCCTCCCCCGCAGGTCGTGGACGCTTTCATCG
AGCCCCGGGAGATGGAGGAAGGTCGCTGGCCTGAGGAGTTCGACCTCTCT
GACCACGGCTTCCTGACTGCCCAGTACCTCTTGAAGGGATAGGGGCGCGG
ACAGGTGGCCAGACGATCAGAAGGTCAAGGCGAAGGCTTGTATAGAGTGA
ACATTGACTGTGATGAACGGAGGCAACTTGAAACACAAAAGAACAAAATA
CGCAATCTTGTCAACGTGAGCCCTCCATGGATGTCTTGCATTGCATTTCA
GTGTGTCTATGCCTCTTTACTGATTGTCACACCCG
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protein sequence of rna8682

>rna8682-protein ID=rna8682-protein|Name=rna8682|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MKAACPSVRRAQHSLPSSDSTSHLSSGRRASTRAGLMPISAPAPGRAIKL
VEETGIRPDAAPASLPSSSPSSSPSSSSSPSSQPLPSSLMSSPSPSALVV
SSPPRFLLVQFLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTF
RITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDER
LLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACF
VSPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVN
THLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSP
KGQVFEYLRHKGFVSAFEAYNRPRAPHKVPSLFSSLFSSLFSFLFSFLFS
SLFSFLFSFLFSSLFSSLLFFLFSLFSLFPSLFPSLSL
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mRNA from alignment at KK037249.1:580726..582353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8682 ID=rna8682|Name=rna8682|organism=Nannochloropsis gaditana|type=mRNA|length=1628bp|location=Sequence derived from alignment at KK037249.1:580726..582353- (Nannochloropsis gaditana)
CATGCAGCCTCTGAGCCGTAGTCAGGACGTCTGCCTTAAGACACAACGAC
CACGCGCCCCGGCCATGCACCCACAGCGGTCAAACCTACCATGGTGCATC
TTGCGGCGCACATAGCGAGTCGCTGACACGGAGCACGCGCGCCTGGCCGT
AGCTTTTTGCACCGTGTTGGCGGGATGATCTCACTCCCTTCAAGGTGGTC
AACCGGCAGGTCGATATGAAAGCCGCCTGCCCGTCAGTACGCCGAGCTCA
ACACTCACTGCCTTCCTCCGATTCAACCTCCCACCTCAGTAGTGGGCGTC
GCGCCTCCACTCGTGCAGGGCTTATGCCAATATCAGCCCCCGCACCCGGT
CGTGCCATCAAGTTAGTGGAGGAGACCGGTATAAGACCAGATGCCGCCCC
CGCCTCCCTCCCTTCCTCCTCTCCTTCCTCGTCCCCTTCCTCCTCCTCTT
CCCCCTCCTCCCAGCCCCTACCCTCGTCATTAATGTCATCACCCTCTCCG
TCCGCCCTCGTCGTCTCCTCCCCTCCGCGTTTTCTCCTCGTGCAATTTCT
TCCCCTCGTCCTCCTCTTGACCGCGCTCACCTCCTCCTCTGCCTTCCTGC
GCGTTACCCCTGCCTTGCCCGCCCGCCGCGCTTTTGCCCCTTCTCCTCTT
GAAGCCATGACGTTCCGTATCACGAGCGCGAACCTCCTTGCCCCCATTTT
CAAACGCGTCGACAGTAACGGCACCCGTGAGAGTGCCTTTCAAGAGCAAT
ACCTCCGCCGACACAGCCGCGTCATAGACAGGCTGTTGGGCAGCAGGGAC
GGGGAGGACGAGAGACTCCTACCGGACGTGCTCTGCGTGCAGGAGTTTTG
GACGCAGGGCTCTGCCTATCGGCGGCTGTACGCCTCTCGTCTCTGCGAGG
AGAAAGGGTACAAGCTGGTGGAGGTGGAGCGGACGAATGCGAGGGGAGAC
GGCGTCGCCTGCTTTGTCTCCCCGCGCGTGGAGCTGGTGGACTACCGACC
CATCTTCTTCTTGGACTGCGGTGACCGGGTGGGCCTCCTCTGTCGGGTGC
GGGTAAGGGACGAGGAAGCGGGGGAGGGCGGGGAGCAGGAACAGTGCGAC
CTGCTGGTGGTGAACACGCACCTCCTCTTCCCCCACAACGCCTACTCAAG
CCGTATCCGCCTCCGGGAGGTGCAGAAGATTCTGGGGTTCATCGACAAGT
ACAAGCACGGTAAGCGCCAGGGCTCTGTCTCCGTCCGCGGCTTTTCCCCT
GCTCATGCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTCTCCTCCCGGCC
CCCTCAGACGAGGATCTCGGCCCCCTTCCCATCATCTTCACGGGGGACTT
AAACGGCTCCCCCAAGGGGCAGGTCTTCGAATACCTCCGTCACAAGGGCT
TCGTCTCCGCCTTTGAGGCCTACAACCGCCCGCGGGCCCCGCACAAGGTC
CCCTCCCTCTTTTCCTCCCTCTTTTCCTCCCTCTTCTCCTTCCTCTTCTC
CTTCCTCTTCTCCTCTCTCTTCTCCTTCCTCTTCTCCTTCCTCTTCTCCT
CCCTCTTCTCCTCCCTCCTCTTCTTCCTCTTCTCCCTCTTCTCCCTCTTT
CCCTCCCTCTTTCCCTCCCTCTCTCTCT
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Coding sequence (CDS) from alignment at KK037249.1:580726..582353-

>rna8682 ID=rna8682|Name=rna8682|organism=Nannochloropsis gaditana|type=CDS|length=2630bp|location=Sequence derived from alignment at KK037249.1:580726..582353- (Nannochloropsis gaditana)
ACGAGGATCTCGGCCCCCTTCCCATCATCTTCACGGGGGACTTAAACGGC
TCCCCCAAGGGGCAGGTCTTCGAATACCTCCGTCACAAGGGCTTCGTCTC
CGCCTTTGAGGCCTACAACCGCCCGCGGGCCCCGCACAAGGTCCCCTCCC
TCTTTTCCTCCCTCTTTTCCTCCCTCTTCTCCTTCCTCTTCTCCTTCCTC
TTCTCCTCTCTCTTCTCCTTCCTCTTCTCCTTCCTCTTCTCCTCCCTCTT
CTCCTCCCTCCTCTTCTTCCTCTTCTCCCTCTTCTCCCTCTTTCCCTCCC
TCTTTCCCTCCCTCTCTCTCTATGAAAGCCGCCTGCCCGTCAGTACGCCG
AGCTCAACACTCACTGCCTTCCTCCGATTCAACCTCCCACCTCAGTAGTG
GGCGTCGCGCCTCCACTCGTGCAGGGCTTATGCCAATATCAGCCCCCGCA
CCCGGTCGTGCCATCAAGTTAGTGGAGGAGACCGGTATAAGACCAGATGC
CGCCCCCGCCTCCCTCCCTTCCTCCTCTCCTTCCTCGTCCCCTTCCTCCT
CCTCTTCCCCCTCCTCCCAGCCCCTACCCTCGTCATTAATGTCATCACCC
TCTCCGTCCGCCCTCGTCGTCTCCTCCCCTCCGCGTTTTCTCCTCGTGCA
ATTTCTTCCCCTCGTCCTCCTCTTGACCGCGCTCACCTCCTCCTCTGCCT
TCCTGCGCGTTACCCCTGCCTTGCCCGCCCGCCGCGCTTTTGCCCCTTCT
CCTCTTGAAGCCATGACGTTCCGTATCACGAGCGCGAACCTCCTTGCCCC
CATTTTCAAACGCGTCGACAGTAACGGCACCCGTGAGAGTGCCTTTCAAG
AGCAATACCTCCGCCGACACAGCCGCGTCATAGACAGGCTGTTGGGCAGC
AGGGACGGGGAGGACGAGAGACTCCTACCGGACGTGCTCTGCGTGCAGGA
GTTTTGGACGCAGGGCTCTGCCTATCGGCGGCTGTACGCCTCTCGTCTCT
GCGAGGAGAAAGGGTACAAGCTGGTGGAGGTGGAGCGGACGAATGCGAGG
GGAGACGGCGTCGCCTGCTTTGTCTCCCCGCGCGTGGAGCTGGTGGACTA
CCGACCCATCTTCTTCTTGGACTGCGGTGACCGGGTGGGCCTCCTCTGTC
GGGTGCGGGTAAGGGACGAGGAAGCGGGGGAGGGCGGGGAGCAGGAACAG
TGCGACCTGCTGGTGGTGAACACGCACCTCCTCTTCCCCCACAACGCCTA
CTCAAGCCGTATCCGCCTCCGGGAGGTGCAGAAGATTCTGGGGTTCATCG
ACAAGTACAAGCACGACGAGGATCTCGGCCCCCTTCCCATCATCTTCACG
GGGGACTTAAACGGCTCCCCCAAGGGGCAGGTCTTCGAATACCTCCGTCA
CAAGGGCTTCGTCTCCGCCTTTGAGGCCTACAACCGCCCGCGGGCCCCGC
ACAAGGTCCCCTCCCTCTTTTCCTCCCTCTTTTCCTCCCTCTTCTCCTTC
CTCTTCTCCTTCCTCTTCTCCTCTCTCTTCTCCTTCCTCTTCTCCTTCCT
CTTCTCCTCCCTCTTCTCCTCCCTCCTCTTCTTCCTCTTCTCCCTCTTCT
CCCTCTTTCCCTCCCTCTTTCCCTCCCTCTCTCTCTATGAAAGCCGCCTG
CCCGTCAGTACGCCGAGCTCAACACTCACTGCCTTCCTCCGATTCAACCT
CCCACCTCAGTAGTGGGCGTCGCGCCTCCACTCGTGCAGGGCTTATGCCA
ATATCAGCCCCCGCACCCGGTCGTGCCATCAAGTTAGTGGAGGAGACCGG
TATAAGACCAGATGCCGCCCCCGCCTCCCTCCCTTCCTCCTCTCCTTCCT
CGTCCCCTTCCTCCTCCTCTTCCCCCTCCTCCCAGCCCCTACCCTCGTCA
TTAATGTCATCACCCTCTCCGTCCGCCCTCGTCGTCTCCTCCCCTCCGCG
TTTTCTCCTCGTGCAATTTCTTCCCCTCGTCCTCCTCTTGACCGCGCTCA
CCTCCTCCTCTGCCTTCCTGCGCGTTACCCCTGCCTTGCCCGCCCGCCGC
GCTTTTGCCCCTTCTCCTCTTGAAGCCATGACGTTCCGTATCACGAGCGC
GAACCTCCTTGCCCCCATTTTCAAACGCGTCGACAGTAACGGCACCCGTG
AGAGTGCCTTTCAAGAGCAATACCTCCGCCGACACAGCCGCGTCATAGAC
AGGCTGTTGGGCAGCAGGGACGGGGAGGACGAGAGACTCCTACCGGACGT
GCTCTGCGTGCAGGAGTTTTGGACGCAGGGCTCTGCCTATCGGCGGCTGT
ACGCCTCTCGTCTCTGCGAGGAGAAAGGGTACAAGCTGGTGGAGGTGGAG
CGGACGAATGCGAGGGGAGACGGCGTCGCCTGCTTTGTCTCCCCGCGCGT
GGAGCTGGTGGACTACCGACCCATCTTCTTCTTGGACTGCGGTGACCGGG
TGGGCCTCCTCTGTCGGGTGCGGGTAAGGGACGAGGAAGCGGGGGAGGGC
GGGGAGCAGGAACAGTGCGACCTGCTGGTGGTGAACACGCACCTCCTCTT
CCCCCACAACGCCTACTCAAGCCGTATCCGCCTCCGGGAGGTGCAGAAGA
TTCTGGGGTTCATCGACAAGTACAAGCACG
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Synonyms
Publications