EWM22015.1, cds8653 (CDS) Nannochloropsis gaditana

Overview
NameEWM22015.1
Unique Namecds8653
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:581145..582138 -
Alignment locationKK037249.1:580726..581046 -

Link to JBrowse

Properties
Property NameValue
Start range580726
Start range.
Protein idEWM22015.1
Productcalcium-binding protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100361g1.4768.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:581145..582138 -
KK037249.1supercontigKK037249.1:580726..581046 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|585102421|gb|EWM22015.1| (calcium-binding protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 861.292 bits (2224), Expect = 0.000e+0
Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 0
Query:    1 MKAACPSVRRAQHSLPSSDSTSHLSSGRRASTRAGLMPISAPAPGRAIKLVEETGIRPDAAPASLPSSSPSSSPSSSSSPSSQPLPSSLMSSPSPSALVVSSPPRFLLVQFLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNRPRAPHKVPSLFSSLFSSLFSFLFSFLFSSLFSFLFSFLFSSLFSSLLFFLFSLFSLFPSLFPSLSL 438
            MKAACPSVRRAQHSLPSSDSTSHLSSGRRASTRAGLMPISAPAPGRAIKLVEETGIRPDAAPASLPSSSPSSSPSSSSSPSSQPLPSSLMSSPSPSALVVSSPPRFLLVQFLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNRPRAPHKVPSLFSSLFSSLFSFLFSFLFSSLFSFLFSFLFSSLFSSLLFFLFSLFSLFPSLFPSLSL
Sbjct:    1 MKAACPSVRRAQHSLPSSDSTSHLSSGRRASTRAGLMPISAPAPGRAIKLVEETGIRPDAAPASLPSSSPSSSPSSSSSPSSQPLPSSLMSSPSPSALVVSSPPRFLLVQFLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNRPRAPHKVPSLFSSLFSSLFSFLFSFLFSSLFSFLFSFLFSSLFSSLLFFLFSLFSLFPSLFPSLSL 438          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|553178913|ref|XP_005852620.1| (hypothetical protein NGA_0713500, partial [Nannochloropsis gaditana CCMP526] >gi|422295911|gb|EKU23210.1| hypothetical protein NGA_0713500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 496.508 bits (1277), Expect = 2.303e-173
Identity = 266/269 (98.88%), Postives = 268/269 (99.63%), Query Frame = 0
Query:   97 ALVVSSPPRFLLVQFLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVS 365
            ALVVSSPPRFLLVQ LPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAF+EQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVR+RDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVS
Sbjct:   40 ALVVSSPPRFLLVQCLPLVLLLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFEEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRVELVDYRPIFFLDCGDRVGLLCRVRLRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVS 308          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|729349210|ref|XP_010542821.1| (PREDICTED: uncharacterized calcium-binding protein At1g02270-like isoform X4 [Tarenaya hassleriana])

HSP 1 Score: 167.933 bits (424), Expect = 6.950e-44
Identity = 89/233 (38.20%), Postives = 136/233 (58.37%), Query Frame = 0
Query:  143 SPLEAMTFRITSANLLAPIFKRVDSNGT--RESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNR 372
            + +   T   T+ N+LAPI+KR+D      RES F  ++  R+ R++D LL  R          ++C+QEFW       R+Y  RL    GY   ++ RTN RGDG+   V     E+V++R + F D GDRV  L  V+     +  G E+ + + L+VNTHLLFPH++  S +RL +V KIL +++ Y+ +  LG +PII  GD NGS +G V+++LR +GFVS+++  +R
Sbjct:   88 ATMGEQTVSCTTFNILAPIYKRLDQQNQSIRESDFHARWFDRNQRILDWLLHDRSS--------IICLQEFWVGNGELERMYRERLGS-GGYTTFQLPRTNERGDGLLTAVHKDDFEVVNHRELLFNDFGDRVAQLLHVQSVVPFSHNGNEKVRQEFLIVNTHLLFPHDSSLSIVRLHQVYKILEYLETYQKENKLGNMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIAHR 311          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|1174566745|gb|OQU91949.1| (hypothetical protein SORBI_3001G263100 [Sorghum bicolor] >gi|1174566748|gb|OQU91952.1| hypothetical protein SORBI_3001G263100 [Sorghum bicolor])

HSP 1 Score: 164.466 bits (415), Expect = 7.445e-44
Identity = 88/223 (39.46%), Postives = 131/223 (58.74%), Query Frame = 0
Query:  153 TSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVGLLCRVR-----VRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEA 369
            T+ N+LAPI+KR+D+   RES ++  +  R+ ++IDRLL             ++C+QE W        +Y  RL  +  Y L ++ RTN RGDG+   V S    ++DYR + F D GDRV  L  V      +++       +Q     L+VNTHLLFPH+   S +RLR+V KIL +I+ Y+ +  LGP+PII  GD NGS +GQV+++LR +GFVS+++ 
Sbjct:   34 TTFNILAPIYKRMDNENCRESQYRAYWFSRNEKIIDRLLADHSS--------IICLQEVWLGNDELVDMYQKRL-GDANYMLFKLARTNNRGDGLLTAVHSNYFNVLDYRELLFNDIGDRVAQLLHVESAMPFLQNRSTSCVHQQS----LIVNTHLLFPHDHSLSIVRLRQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDT 243          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|971520328|dbj|GAQ77921.1| (calcium-binding endonuclease/exonuclease/phosphatase family [Klebsormidium nitens])

HSP 1 Score: 172.555 bits (436), Expect = 8.806e-44
Identity = 97/255 (38.04%), Postives = 148/255 (58.04%), Query Frame = 0
Query:  134 LPARRAFAPS----PLEAMT--FRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVG---------LLCRVRVRDEEA---GEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEA 369
            L A R   PS     LEA T    +T+ N+LAPI+KRV  +G RESA Q ++ +R+  +++ LL  R          ++C+QEFW +      LY ++L    GY + ++ RTN +GDG+   V S  + ++D R I F DCGDRV          LL +  + D EA      G +   +L++VNTHL+FPHN  +  IRLR+V K++ ++ +Y+ + +L P+PII  GD NGS  GQV+++LR +G +S ++A
Sbjct:  215 LAAGREAGPSGREEALEAGTDFISVTTFNILAPIYKRVSGDGERESADQARWKKRNQEIVELLLTKR--------SSIICLQEFWHKNEELCELYRAKLGA-AGYTMFQMGRTNDKGDGLFTAVQSDHLRVLDMREIVFHDCGDRVAQLFHLQATELLSKCSIDDHEARPFDWCGTEHAAELILVNTHLMFPHNGNACVIRLRQVYKLVDYLGRYQRERNLPPMPIILCGDWNGSKHGQVYKFLRSRGCISTYDA 460          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|1142701933|gb|AQK65857.1| (Calcium-binding endonuclease/exonuclease/phosphatase family [Zea mays])

HSP 1 Score: 162.925 bits (411), Expect = 1.409e-43
Identity = 93/255 (36.47%), Postives = 139/255 (54.51%), Query Frame = 0
Query:  143 SPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSPRV-ELVDYRPIFFLDCGDRVGLLCRVR-----VRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNR----PRAPHKVPSLFSSLF 387
             P +      T+ N+LAPI+KR+D+   RES ++  +  R+ ++IDRLL             ++C+QE W        +Y  RL  +  Y L ++ RTN RGDG+   V      +++YR + F D GDRV  L  V      +++       +Q     L+VNTHLLFPH+   S +RLR+V KIL +I+ Y  +  LGPLPII  GD NGS +GQV+++LR +GFVS+++  ++        HKV   F+ L 
Sbjct:   24 QPRDERCVSCTTFNILAPIYKRMDNENCRESQYRAYWFSRNEKIIDRLLADH--------SSIICLQEVWLGNDELVDMYQKRL-GDANYMLFKLARTNNRGDGLLTAVHRNYFNVLNYRELLFNDIGDRVAQLLHVESAMPFLQNRSTSCVHQQS----LIVNTHLLFPHDHSLSIVRLRQVYKILQYIEAYLEEHKLGPLPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKVTRRFAILI 265          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|727569313|ref|XP_010457191.1| (PREDICTED: uncharacterized calcium-binding protein At1g02270 isoform X2 [Camelina sativa])

HSP 1 Score: 167.933 bits (424), Expect = 2.984e-43
Identity = 90/253 (35.57%), Postives = 143/253 (56.52%), Query Frame = 0
Query:  117 LLTALTSSSAFLRVTPALPARRAFAPSPLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFVSP-RVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFE 368
            LL+ +   ++ +R+   L +  +   S +   TF     N+LAPI+KRVD    RES F E +L R+ R++D LL  R          V+C+QE W        +Y  +L    GY + ++ RTN RGDG+   +     ++V+YR + F D GDRV  L  V+        G +  Q ++++VNTHLLFPH++  S +RL +V KIL +++ Y+ +  L  +PII  GD NGS +G V+++LR +GF+S+++
Sbjct:   53 LLSRINKPASLMRLNSNLAS--SMVESNISCTTF-----NILAPIYKRVDQQSIRESDFHELWLARNQRILDLLLHKRSS--------VICLQEVWVGNEELVNMYHDQLATS-GYTIFQLARTNGRGDGLLTAIHKDHFKVVNYRELLFNDFGDRVAQLLHVKSVVPFPLNGKQDIQQEVIIVNTHLLFPHDSSLSVVRLHQVYKILEYLEAYQKEYKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYD 289          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|1174566747|gb|OQU91951.1| (hypothetical protein SORBI_3001G263100 [Sorghum bicolor])

HSP 1 Score: 165.236 bits (417), Expect = 4.248e-43
Identity = 88/223 (39.46%), Postives = 131/223 (58.74%), Query Frame = 0
Query:  153 TSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVGLLCRVR-----VRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEA 369
            T+ N+LAPI+KR+D+   RES ++  +  R+ ++IDRLL             ++C+QE W        +Y  RL  +  Y L ++ RTN RGDG+   V S    ++DYR + F D GDRV  L  V      +++       +Q     L+VNTHLLFPH+   S +RLR+V KIL +I+ Y+ +  LGP+PII  GD NGS +GQV+++LR +GFVS+++ 
Sbjct:   34 TTFNILAPIYKRMDNENCRESQYRAYWFSRNEKIIDRLLADH--------SSIICLQEVWLGNDELVDMYQKRL-GDANYMLFKLARTNNRGDGLLTAVHSNYFNVLDYRELLFNDIGDRVAQLLHVESAMPFLQNRSTSCVHQQS----LIVNTHLLFPHDHSLSIVRLRQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDT 243          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|514817115|ref|XP_004983287.1| (PREDICTED: uncharacterized calcium-binding protein At1g02270 isoform X4 [Setaria italica])

HSP 1 Score: 164.851 bits (416), Expect = 4.802e-43
Identity = 90/231 (38.96%), Postives = 133/231 (57.58%), Query Frame = 0
Query:  144 PLEAMTFRITSANLLAPIFKRVDSNGTRESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVGLLCRVR----VRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEA 369
            P +      T+ N+LAPI+KR+DS   RES ++  +  R+ ++IDRLL             ++C+QE W        +Y  RL  +  Y L ++ RTN RGDG+   V S    +++YR + F D GDRV  L  V     V    +    +Q+    L+VNTHLLFPH+   S +RLR+V KIL +I+ Y+ +  LGP+PII  GD NGS +GQV+++LR +GFVS+++ 
Sbjct:   24 PRDERCVSCTTFNILAPIYKRMDSENCRESQYRAYWFSRNEKIIDRLLADS--------SSIICLQEVWLGNDELVDMYQKRL-GDANYTLFKLARTNNRGDGLLTAVHSSYFNVLNYRELLFNDFGDRVAQLLHVESAMPVLQNRSTRCVQQQS---LIVNTHLLFPHDHSLSVVRLRQVYKILQYIEAYQEENKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDT 242          
BLAST of EWM22015.1 vs. NCBI_GenBank
Match: gi|729349201|ref|XP_010542818.1| (PREDICTED: uncharacterized calcium-binding protein At1g02270-like isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 167.933 bits (424), Expect = 4.826e-43
Identity = 89/233 (38.20%), Postives = 136/233 (58.37%), Query Frame = 0
Query:  143 SPLEAMTFRITSANLLAPIFKRVDSNGT--RESAFQEQYLRRHSRVIDRLLGSRDGEDERLLPDVLCVQEFWTQGSAYRRLYASRLCEEKGYKLVEVERTNARGDGVACFV-SPRVELVDYRPIFFLDCGDRVGLLCRVRVRDEEAGEGGEQEQCDLLVVNTHLLFPHNAYSSRIRLREVQKILGFIDKYKHDEDLGPLPIIFTGDLNGSPKGQVFEYLRHKGFVSAFEAYNR 372
            + +   T   T+ N+LAPI+KR+D      RES F  ++  R+ R++D LL  R          ++C+QEFW       R+Y  RL    GY   ++ RTN RGDG+   V     E+V++R + F D GDRV  L  V+     +  G E+ + + L+VNTHLLFPH++  S +RL +V KIL +++ Y+ +  LG +PII  GD NGS +G V+++LR +GFVS+++  +R
Sbjct:   85 ATMGEQTVSCTTFNILAPIYKRLDQQNQSIRESDFHARWFDRNQRILDWLLHDRSS--------IICLQEFWVGNGELERMYRERLGS-GGYTTFQLPRTNERGDGLLTAVHKDDFEVVNHRELLFNDFGDRVAQLLHVQSVVPFSHNGNEKVRQEFLIVNTHLLFPHDSSLSIVRLHQVYKILEYLETYQKENKLGNMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIAHR 308          
The following BLAST results are available for this feature:
BLAST of EWM22015.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102421|gb|EWM22015.1|0.000e+0100.00calcium-binding protein, partial [Nannochloropsis ... [more]
gi|553178913|ref|XP_005852620.1|2.303e-17398.88hypothetical protein NGA_0713500, partial [Nannoch... [more]
gi|729349210|ref|XP_010542821.1|6.950e-4438.20PREDICTED: uncharacterized calcium-binding protein... [more]
gi|1174566745|gb|OQU91949.1|7.445e-4439.46hypothetical protein SORBI_3001G263100 [Sorghum bi... [more]
gi|971520328|dbj|GAQ77921.1|8.806e-4438.04calcium-binding endonuclease/exonuclease/phosphata... [more]
gi|1142701933|gb|AQK65857.1|1.409e-4336.47Calcium-binding endonuclease/exonuclease/phosphata... [more]
gi|727569313|ref|XP_010457191.1|2.984e-4335.57PREDICTED: uncharacterized calcium-binding protein... [more]
gi|1174566747|gb|OQU91951.1|4.248e-4339.46hypothetical protein SORBI_3001G263100 [Sorghum bi... [more]
gi|514817115|ref|XP_004983287.1|4.802e-4338.96PREDICTED: uncharacterized calcium-binding protein... [more]
gi|729349201|ref|XP_010542818.1|4.826e-4338.20PREDICTED: uncharacterized calcium-binding protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8682rna8682Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications